-
1
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick, J. E., Yu, D. S., Yoon, S. H., Jeong, H., Oh, T. K., Schneider, D., et al. (2009). Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461, 1243-1247. doi: 10.1038/nature08480
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
Schneider, D.6
-
2
-
-
1442306213
-
Engineering Escherichia coli for efficient conversion of glucose to pyruvate
-
Causey, T. B., Shanmugam, K. T., Yomano, L. P., and Ingram, L. O. (2004). Engineering Escherichia coli for efficient conversion of glucose to pyruvate. Proc. Natl. Acad. Sci. U.S.A. 101, 2235-2240. doi: 10.1073/pnas.0308171100
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 2235-2240
-
-
Causey, T.B.1
Shanmugam, K.T.2
Yomano, L.P.3
Ingram, L.O.4
-
3
-
-
78650546051
-
RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media
-
Conrad, T. M., Frazier, M., Joyce, A. R., Cho, B.-K., Knight, E. M., Lewis, N. E., et al. (2010). RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. Proc. Natl. Acad. Sci. U.S.A. 107, 20500-20505. doi: 10.1073/pnas.0911253107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A
, vol.107
, pp. 20500-20505
-
-
Conrad, T.M.1
Frazier, M.2
Joyce, A.R.3
Cho, B.-K.4
Knight, E.M.5
Lewis, N.E.6
-
4
-
-
70449533064
-
Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3)
-
Daegelen, P., Studier, F. W., Lenski, R. E., Cure, S., and Kim, J. F. (2009). Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3). J. Mol. Biol. 394, 634-643. doi: 10.1016/j.jmb.2009.09.022
-
(2009)
J. Mol. Biol
, vol.394
, pp. 634-643
-
-
Daegelen, P.1
Studier, F.W.2
Lenski, R.E.3
Cure, S.4
Kim, J.F.5
-
5
-
-
84879489028
-
Adaptive laboratory evolution-principles and applications for biotechnology
-
Dragosits, M., and Mattanovich, D. (2013). Adaptive laboratory evolution-principles and applications for biotechnology. Microb. Cell Fact. 12:64. doi: 10.1186/1475-2859-12-64
-
(2013)
Microb. Cell Fact
, vol.12
, pp. 64
-
-
Dragosits, M.1
Mattanovich, D.2
-
6
-
-
77950863401
-
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
-
Feist, A. M., Zielinski, D. C., Orth, J. D., Schellenberger, J., Herrgard, M. J., and Palsson, B. Ø. (2010). Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli. Metab. Eng. 12, 173-186. doi: 10.1016/j.ymben.2009.10.003
-
(2010)
Metab. Eng
, vol.12
, pp. 173-186
-
-
Feist, A.M.1
Zielinski, D.C.2
Orth, J.D.3
Schellenberger, J.4
Herrgard, M.J.5
Palsson, B.Ø.6
-
7
-
-
84989865639
-
Functional mining of transporters using synthetic selections
-
Genee, H. J., Bali, A. P., Petersen, S. D., Siedler, S., Bonde, M. T., Gronenberg, L. S., et al. (2016). Functional mining of transporters using synthetic selections. Nat. Chem. Biol. 12, 1015-1022. doi: 10.1038/nchembio.2189
-
(2016)
Nat. Chem. Biol
, vol.12
, pp. 1015-1022
-
-
Genee, H.J.1
Bali, A.P.2
Petersen, S.D.3
Siedler, S.4
Bonde, M.T.5
Gronenberg, L.S.6
-
8
-
-
0037271033
-
Amino acid production processes
-
Ikeda, M. (2003). Amino acid production processes. Adv. Biochem. Eng. Biotechnol. 79, 1-35. doi: 10.1007/3-540-45989-8_1
-
(2003)
Adv. Biochem. Eng. Biotechnol
, vol.79
, pp. 1-35
-
-
Ikeda, M.1
-
9
-
-
0027251266
-
The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels
-
Jensen, K. F. (1993). The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels. J. Bacteriol. 175, 3401-3407
-
(1993)
J. Bacteriol
, vol.175
, pp. 3401-3407
-
-
Jensen, K.F.1
-
10
-
-
85007574032
-
Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion
-
King, Z. A., Brien, E. J. O., Feist, A. M., and Palsson, B. O. (2017). Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion. Metab. Eng. 39, 220-227. doi: 10.1016/j.ymben.2016.12.004
-
(2017)
Metab. Eng
, vol.39
, pp. 220-227
-
-
King, Z.A.1
Brien, E.J.O.2
Feist, A.M.3
Palsson, B.O.4
-
11
-
-
44249111668
-
Application of functional genomics to pathway optimization for increased isoprenoid production
-
Kizer, L., Pitera, D. J., Pfleger, B. F., and Keasling, J. D. (2008). Application of functional genomics to pathway optimization for increased isoprenoid production. Appl. Environ. Microbiol. 74, 3229-3241. doi: 10.1128/AEM.02750-07
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 3229-3241
-
-
Kizer, L.1
Pitera, D.J.2
Pfleger, B.F.3
Keasling, J.D.4
-
12
-
-
0036302723
-
The glycolytic flux in Escherichia coli is controlled by the demand for ATP
-
Koebmann, B. J., Westerhoff, H. V., Snoep, J. L., Nilsson, D., and Jensen, P. R. (2002). The glycolytic flux in Escherichia coli is controlled by the demand for ATP. J. Bacteriol. 184, 3909-3916. doi: 10.1128/JB.184.14.3909-3916.2002
-
(2002)
J. Bacteriol
, vol.184
, pp. 3909-3916
-
-
Koebmann, B.J.1
Westerhoff, H.V.2
Snoep, J.L.3
Nilsson, D.4
Jensen, P.R.5
-
13
-
-
84917705874
-
Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium
-
LaCroix, R. A., Sandberg, T. E., O'Brien, E. J., Utrilla, J., Ebrahim, A., Guzman, G. I., et al. (2015). Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium. Appl. Environ. Microbiol. 81, 17-30. doi: 10.1128/AEM.02246-14
-
(2015)
Appl. Environ. Microbiol
, vol.81
, pp. 17-30
-
-
LaCroix, R.A.1
Sandberg, T.E.2
O'Brien, E.J.3
Utrilla, J.4
Ebrahim, A.5
Guzman, G.I.6
-
14
-
-
85024100516
-
Assessing glycolytic flux alterations resulting from genetic perturbations in E. coli using a biosensor
-
Lehning, C. E., Siedler, S., Ellabaan, M. M. H., and Sommer, M. O. A. (2017). Assessing glycolytic flux alterations resulting from genetic perturbations in E. coli using a biosensor. Metab. Eng. 42, 194-202. doi: 10.1016/j.ymben.2017.07.002
-
(2017)
Metab. Eng
, vol.42
, pp. 194-202
-
-
Lehning, C.E.1
Siedler, S.2
Ellabaan, M.M.H.3
Sommer, M.O.A.4
-
15
-
-
85030212667
-
Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring
-
Long, C. P., Gonzalez, J. E., Feist, A. M., and Palsson, B. O., Antoniewicz, M. R. (2017). Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring. Metab. Eng. 44, 100-107. doi: 10.1016/j.ymben.2017.09.012
-
(2017)
Metab. Eng
, vol.44
, pp. 100-107
-
-
Long, C.P.1
Gonzalez, J.E.2
Feist, A.M.3
Palsson, B.O.4
Antoniewicz, M.R.5
-
16
-
-
84945388093
-
Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum
-
Mahr, R., Gätgens, C., Gätgens, J., Polen, T., Kalinowski, J., and Frunzke, J. (2015). Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum. Metab. Eng. 32, 184-194. doi: 10.1016/j.ymben.2015.09.017
-
(2015)
Metab. Eng
, vol.32
, pp. 184-194
-
-
Mahr, R.1
Gätgens, C.2
Gätgens, J.3
Polen, T.4
Kalinowski, J.5
Frunzke, J.6
-
17
-
-
0038391517
-
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
-
Martin, V. J. J., Pitera, D. J., Withers, S. T., Newman, J. D., and Keasling, J. D. (2003). Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat. Biotechnol. 21, 796-802. doi: 10.1038/nbt833
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 796-802
-
-
Martin, V.J.J.1
Pitera, D.J.2
Withers, S.T.3
Newman, J.D.4
Keasling, J.D.5
-
18
-
-
84960460639
-
Engineering cellular metabolism
-
Nielsen, J., and Keasling, J. (2016). Engineering cellular metabolism. Cell 164, 1185-1197. doi: 10.1016/j.cell.2016.02.004
-
(2016)
Cell
, vol.164
, pp. 1185-1197
-
-
Nielsen, J.1
Keasling, J.2
-
19
-
-
34548769341
-
Evolution of global regulatory networks during a long-term experiment with Escherichia coli
-
Philippe, N., Crozat, E., Lenski, R. E., and Schneider, D. (2007). Evolution of global regulatory networks during a long-term experiment with Escherichia coli. BioEssays 29, 846-860. doi: 10.1002/bies.20629
-
(2007)
BioEssays
, vol.29
, pp. 846-860
-
-
Philippe, N.1
Crozat, E.2
Lenski, R.E.3
Schneider, D.4
-
20
-
-
84919359797
-
Evolution-guided optimization of biosynthetic pathways
-
Raman, S., Rogers, J. K., Taylor, N. D., and Church, G. M. (2014). Evolution-guided optimization of biosynthetic pathways. Proc. Natl. Acad. Sci. U.S.A. 111, 17803-17808. doi: 10.1073/pnas.1409523111
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. 17803-17808
-
-
Raman, S.1
Rogers, J.K.2
Taylor, N.D.3
Church, G.M.4
-
21
-
-
85042235346
-
Diverse genetic error modes constrain large-scale bio-based production
-
Rugbjerg, P., Myling-Petersen, N., Porse, A., Sarup-Lytzen, K., and Sommer, M. O. A. (2018a). Diverse genetic error modes constrain large-scale bio-based production. Nat. Commun. 9:787. doi: 10.1038/s41467-018-03232-w
-
(2018)
Nat. Commun
, vol.9
, pp. 787
-
-
Rugbjerg, P.1
Myling-Petersen, N.2
Porse, A.3
Sarup-Lytzen, K.4
Sommer, M.O.A.5
-
22
-
-
85042918593
-
Synthetic addiction extends the productive life time of engineered Escherichia coli populations
-
Rugbjerg, P., Sarup-Lytzen, K., Nagy, M., and Sommer, M. O. A. (2018b). Synthetic addiction extends the productive life time of engineered Escherichia coli populations. Proc. Natl. Acad. Sci. U.S.A. 115, 2347-2352. doi: 10.1073/pnas.1718622115
-
(2018)
Proc. Natl. Acad. Sci. U.S.A
, vol.115
, pp. 2347-2352
-
-
Rugbjerg, P.1
Sarup-Lytzen, K.2
Nagy, M.3
Sommer, M.O.A.4
-
23
-
-
21644488952
-
Production of mevalonate by a metabolically-engineered Escherichia coli
-
Tabata, K., and Hashimoto, S. I. (2004). Production of mevalonate by a metabolically-engineered Escherichia coli. Biotechnol. Lett. 26, 1487-1491. doi: 10.1023/B:BILE.0000044449.08268.7d
-
(2004)
Biotechnol. Lett
, vol.26
, pp. 1487-1491
-
-
Tabata, K.1
Hashimoto, S.I.2
-
24
-
-
84967180536
-
Global rebalancing of cellular resources by pleiotropic point mutations illustrates a multi-scale mechanism of adaptive evolution
-
Utrilla, J., O'Brien, E. J., Chen, K., McCloskey, D., Cheung, J., Wang, H., et al. (2016). Global rebalancing of cellular resources by pleiotropic point mutations illustrates a multi-scale mechanism of adaptive evolution. Cell Syst. 2, 260-271. doi: 10.1016/j.cels.2016.04.003
-
(2016)
Cell Syst
, vol.2
, pp. 260-271
-
-
Utrilla, J.1
O'Brien, E.J.2
Chen, K.3
McCloskey, D.4
Cheung, J.5
Wang, H.6
-
25
-
-
32444444039
-
Selection of biocatalysts for chemical synthesis
-
van Sint Fiet, S., van Beilen, J. B., and Witholt, B. (2006). Selection of biocatalysts for chemical synthesis. Proc. Natl. Acad. Sci. U.S.A. 103, 1693-1698. doi: 10.1073/pnas.0504733102
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 1693-1698
-
-
van Sint Fiet, S.1
van Beilen, J.B.2
Witholt, B.3
-
26
-
-
84997173327
-
Engineering highly efficient, E. coli strain for mevalonate fermentation by chromosomal integration
-
Wang, J., Niyompanich, S., Tai, Y.-S., Wang, J., Bai, W., Mahida, P., et al. (2016). Engineering highly efficient, E. coli strain for mevalonate fermentation by chromosomal integration. Appl. Environ. Microbiol. 82, 7176-7184. doi: 10.1128/AEM.02178-16
-
(2016)
Appl. Environ. Microbiol
, vol.82
, pp. 7176-7184
-
-
Wang, J.1
Niyompanich, S.2
Tai, Y.-S.3
Wang, J.4
Bai, W.5
Mahida, P.6
-
27
-
-
84902186055
-
Scalable production of mechanically tunable block polymers from sugar
-
Xiong, M., Schneiderman, D. K., Bates, F. S., Hillmyer, M. A., and Zhang, K. (2014). Scalable production of mechanically tunable block polymers from sugar. Proc. Natl. Acad. Sci. U.S.A. 111, 8357-8362. doi: 10.1073/pnas.1404596111
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. 8357-8362
-
-
Xiong, M.1
Schneiderman, D.K.2
Bates, F.S.3
Hillmyer, M.A.4
Zhang, K.5
|