메뉴 건너뛰기




Volumn 82, Issue 24, 2016, Pages 7176-7184

Engineering of a highly efficient Escherichia coli strain for mevalonate fermentation through chromosomal integration

Author keywords

[No Author keywords available]

Indexed keywords

BOTTLES; ESCHERICHIA COLI; GENES; INTEGRATION; METABOLISM; PRODUCTIVITY;

EID: 84997173327     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02178-16     Document Type: Article
Times cited : (63)

References (39)
  • 1
    • 84860780250 scopus 로고    scopus 로고
    • Two distinct pathways for essential metabolic precursors for isoprenoid biosynthesis
    • Kuzuyama T, Seto H. 2012. Two distinct pathways for essential metabolic precursors for isoprenoid biosynthesis. Proc Jpn Acad Ser B Phys Biol Sci 88:41-52. http://dx.doi.org/10.2183/pjab.88.41.
    • (2012) Proc Jpn Acad Ser B Phys Biol Sci , vol.88 , pp. 41-52
    • Kuzuyama, T.1    Seto, H.2
  • 2
    • 33847309176 scopus 로고    scopus 로고
    • Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
    • Pitera DJ, Paddon CJ, Newman JD, Keasling JD. 2007. Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metab Eng 9:193-207. http://dx.doi.org/10.1016/j.ymben.2006.11.002.
    • (2007) Metab Eng , vol.9 , pp. 193-207
    • Pitera, D.J.1    Paddon, C.J.2    Newman, J.D.3    Keasling, J.D.4
  • 3
    • 0038391517 scopus 로고    scopus 로고
    • Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
    • Martin VJ, Pitera DJ, Withers ST, Newman JD, Keasling JD. 2003. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat Biotechnol 21:796-802. http://dx.doi.org/10.1038/nbt833.
    • (2003) Nat Biotechnol , vol.21 , pp. 796-802
    • Martin, V.J.1    Pitera, D.J.2    Withers, S.T.3    Newman, J.D.4    Keasling, J.D.5
  • 9
    • 18644385075 scopus 로고    scopus 로고
    • Hiochic acid, a new growth factor for Lactobacillus homohiochi and Lactobacillus heterohiochi
    • Tamura G. 2004. Hiochic acid, a new growth factor for Lactobacillus homohiochi and Lactobacillus heterohiochi. J Gen Appl Microbiol 50:327-330.
    • (2004) J Gen Appl Microbiol , vol.50 , pp. 327-330
    • Tamura, G.1
  • 10
  • 11
    • 68449103617 scopus 로고    scopus 로고
    • Stabilized gene duplication enables long-term selection-free heterologous pathway expression
    • Tyo KE, Ajikumar PK, Stephanopoulos G. 2009. Stabilized gene duplication enables long-term selection-free heterologous pathway expression. Nat Biotechnol 27:760-765. http://dx.doi.org/10.1038/nbt.1555.
    • (2009) Nat Biotechnol , vol.27 , pp. 760-765
    • Tyo, K.E.1    Ajikumar, P.K.2    Stephanopoulos, G.3
  • 12
    • 38749148516 scopus 로고    scopus 로고
    • Synthetic biology for synthetic chemistry
    • Keasling JD. 2008. Synthetic biology for synthetic chemistry. ACS Chem Biol 3:64-76. http://dx.doi.org/10.1021/cb7002434.
    • (2008) ACS Chem Biol , vol.3 , pp. 64-76
    • Keasling, J.D.1
  • 13
    • 34247892449 scopus 로고    scopus 로고
    • Gene and cell survival: lessons from prokaryotic plasmid R1
    • de la Cueva-Méndez G, Pimentel B. 2007. Gene and cell survival: lessons from prokaryotic plasmid R1. EMBO Rep 8:458-464. http://dx.doi.org/10.1038/sj.embor.7400957.
    • (2007) EMBO Rep , vol.8 , pp. 458-464
    • de la Cueva-Méndez, G.1    Pimentel, B.2
  • 14
    • 2342653439 scopus 로고    scopus 로고
    • Plasmid copy number and plasmid stability
    • Friehs K. 2004. Plasmid copy number and plasmid stability. Adv Biochem Eng Biotechnol 86:47-82.
    • (2004) Adv Biochem Eng Biotechnol , vol.86 , pp. 47-82
    • Friehs, K.1
  • 15
    • 84961223765 scopus 로고    scopus 로고
    • Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications
    • Wu G, Yan Q, Jones JA, Tang YJ, Fong SS, Koffas MA. 2016. Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications. Trends Biotechnol 34:652-664. http://dx.doi.org/10.1016/j.tibtech.2016.02.010.
    • (2016) Trends Biotechnol , vol.34 , pp. 652-664
    • Wu, G.1    Yan, Q.2    Jones, J.A.3    Tang, Y.J.4    Fong, S.S.5    Koffas, M.A.6
  • 16
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640-6645. http://dx.doi.org/10.1073/pnas.120163297.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 17
    • 0033983166 scopus 로고    scopus 로고
    • Towards single-copy gene expression systems making gene cloning physiologically relevant: lambda InCh, a simple Escherichia coli plasmid-chromosome shuttle system
    • Boyd D, Weiss DS, Chen JC, Beckwith J. 2000. Towards single-copy gene expression systems making gene cloning physiologically relevant: lambda InCh, a simple Escherichia coli plasmid-chromosome shuttle system. J Bacteriol 182:842-847. http://dx.doi.org/10.1128/JB.182.3.842-847.2000.
    • (2000) J Bacteriol , vol.182 , pp. 842-847
    • Boyd, D.1    Weiss, D.S.2    Chen, J.C.3    Beckwith, J.4
  • 18
    • 84926665601 scopus 로고    scopus 로고
    • A rapid and reliable strategy for chromosomal integration of gene(s) with multiple copies
    • Gu P, Yang F, Su T, Wang Q, Liang Q, Qi Q. 2015. A rapid and reliable strategy for chromosomal integration of gene(s) with multiple copies. Sci Rep 5:9684. http://dx.doi.org/10.1038/srep09684.
    • (2015) Sci Rep , vol.5 , pp. 9684
    • Gu, P.1    Yang, F.2    Su, T.3    Wang, Q.4    Liang, Q.5    Qi, Q.6
  • 19
    • 0022378550 scopus 로고
    • The FLP recombinase of the yeast 2-micron plasmid: characterization of its recombination site
    • Senecoff JF, Bruckner RC, Cox MM. 1985. The FLP recombinase of the yeast 2-micron plasmid: characterization of its recombination site. Proc Natl Acad Sci U S A 82:7270-7274. http://dx.doi.org/10.1073/pnas.82.21.7270.
    • (1985) Proc Natl Acad Sci U S A , vol.82 , pp. 7270-7274
    • Senecoff, J.F.1    Bruckner, R.C.2    Cox, M.M.3
  • 20
    • 84862275341 scopus 로고    scopus 로고
    • Combinatorial modulation of galP and glk gene expression for improved alternative glucose utilization
    • Lu J, Tang J, Liu Y, Zhu X, Zhang T, Zhang X. 2012. Combinatorial modulation of galP and glk gene expression for improved alternative glucose utilization. Appl Microbiol Biotechnol 93:2455-2462. http://dx.doi.org/10.1007/s00253-011-3752-y.
    • (2012) Appl Microbiol Biotechnol , vol.93 , pp. 2455-2462
    • Lu, J.1    Tang, J.2    Liu, Y.3    Zhu, X.4    Zhang, T.5    Zhang, X.6
  • 21
    • 24644515752 scopus 로고    scopus 로고
    • Tuning genetic control through promoter engineering
    • Alper H, Fischer C, Nevoigt E, Stephanopoulos G. 2005. Tuning genetic control through promoter engineering. Proc Natl Acad Sci U S A 102: 12678-12683. http://dx.doi.org/10.1073/pnas.0504604102.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 12678-12683
    • Alper, H.1    Fischer, C.2    Nevoigt, E.3    Stephanopoulos, G.4
  • 22
    • 0030759410 scopus 로고    scopus 로고
    • Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations
    • Siegele DA, Hu JC. 1997. Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations. Proc Natl Acad SciUS A 94:8168-8172. http://dx.doi.org/10.1073/pnas.94.15.8168.
    • (1997) Proc Natl Acad SciUS A , vol.94 , pp. 8168-8172
    • Siegele, D.A.1    Hu, J.C.2
  • 23
    • 77951237154 scopus 로고    scopus 로고
    • Production of recombinant proteins in E. coli by the heat inducible expression system based on the phage lambda pL and/or pR promoters
    • Valdez-Cruz NA, Caspeta L, Perez NO, Ramirez OT, Trujillo-Roldan MA. 2010. Production of recombinant proteins in E. coli by the heat inducible expression system based on the phage lambda pL and/or pR promoters. Microb Cell Fact 9:18. http://dx.doi.org/10.1186/1475-2859-9-18.
    • (2010) Microb Cell Fact , vol.9 , pp. 18
    • Valdez-Cruz, N.A.1    Caspeta, L.2    Perez, N.O.3    Ramirez, O.T.4    Trujillo-Roldan, M.A.5
  • 24
    • 84940303056 scopus 로고    scopus 로고
    • Construction of a synthetically engineered nirB promoter for expression of recombinant protein in Escherichia coli
    • Nasr R, Akbari Eidgahi MR. 2014. Construction of a synthetically engineered nirB promoter for expression of recombinant protein in Escherichia coli. Jundishapur J Microbiol 7:e15942.
    • (2014) Jundishapur J Microbiol , vol.7
    • Nasr, R.1    Akbari Eidgahi, M.R.2
  • 25
    • 33747376106 scopus 로고    scopus 로고
    • Engineering of promoter replacement cassettes for fine-tuning of gene expression in Saccharomyces cerevisiae
    • Nevoigt E, Kohnke J, Fischer CR, Alper H, Stahl U, Stephanopoulos G. 2006. Engineering of promoter replacement cassettes for fine-tuning of gene expression in Saccharomyces cerevisiae. Appl Environ Microbiol 72: 5266-5273. http://dx.doi.org/10.1128/AEM.00530-06.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5266-5273
    • Nevoigt, E.1    Kohnke, J.2    Fischer, C.R.3    Alper, H.4    Stahl, U.5    Stephanopoulos, G.6
  • 26
    • 79958224739 scopus 로고    scopus 로고
    • High-yield resveratrol production in engineered Escherichia coli
    • Lim CG, Fowler ZL, Hueller T, Schaffer S, Koffas MA. 2011. High-yield resveratrol production in engineered Escherichia coli. Appl Environ Microbiol 77:3451-3460. http://dx.doi.org/10.1128/AEM.02186-10.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3451-3460
    • Lim, C.G.1    Fowler, Z.L.2    Hueller, T.3    Schaffer, S.4    Koffas, M.A.5
  • 27
    • 0036302723 scopus 로고    scopus 로고
    • The glycolytic flux in Escherichia coli is controlled by the demand for ATP
    • Koebmann BJ, Westerhoff HV, Snoep JL, Nilsson D, Jensen PR. 2002. The glycolytic flux in Escherichia coli is controlled by the demand for ATP. J Bacteriol 184:3909-3916. http://dx.doi.org/10.1128/JB.184.14.3909-3916.2002.
    • (2002) J Bacteriol , vol.184 , pp. 3909-3916
    • Koebmann, B.J.1    Westerhoff, H.V.2    Snoep, J.L.3    Nilsson, D.4    Jensen, P.R.5
  • 28
    • 0037417864 scopus 로고    scopus 로고
    • Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redoxneutral and oxidized products: homoacetate production
    • Causey TB, Zhou S, Shanmugam KT, Ingram LO. 2003. Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redoxneutral and oxidized products: homoacetate production. Proc Natl Acad Sci U S A 100:825-832. http://dx.doi.org/10.1073/pnas.0337684100.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 825-832
    • Causey, T.B.1    Zhou, S.2    Shanmugam, K.T.3    Ingram, L.O.4
  • 29
    • 1442306213 scopus 로고    scopus 로고
    • Engineering Escherichia coli for efficient conversion of glucose to pyruvate
    • Causey TB, Shanmugam KT, Yomano LP, Ingram LO. 2004. Engineering Escherichia coli for efficient conversion of glucose to pyruvate. Proc Natl Acad Sci U S A 101:2235-2240. http://dx.doi.org/10.1073/pnas.0308171100.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 2235-2240
    • Causey, T.B.1    Shanmugam, K.T.2    Yomano, L.P.3    Ingram, L.O.4
  • 30
    • 55049095515 scopus 로고    scopus 로고
    • High glycolytic flux improves pyruvate production by a metabolically engineered Escherichia coli strain
    • Zhu Y, Eiteman MA, Altman R, Altman E. 2008. High glycolytic flux improves pyruvate production by a metabolically engineered Escherichia coli strain. Appl Environ Microbiol 74:6649-6655. http://dx.doi.org/10.1128/AEM.01610-08.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 6649-6655
    • Zhu, Y.1    Eiteman, M.A.2    Altman, R.3    Altman, E.4
  • 31
    • 85004191348 scopus 로고    scopus 로고
    • Complete genome sequence of Escherichia coli BW25113
    • Grenier F, Matteau D, Baby V, Rodrigue S. 2014. Complete genome sequence of Escherichia coli BW25113. Genome Announc 2(5):e01038-14. http://dx.doi.org/10.1128/genomeA.01038-14.
    • (2014) Genome Announc , vol.2 , Issue.5
    • Grenier, F.1    Matteau, D.2    Baby, V.3    Rodrigue, S.4
  • 33
    • 0642342156 scopus 로고    scopus 로고
    • Creation of chimeric junctions, deletions, and insertions by PCR
    • Pont-Kingdon G. 2003. Creation of chimeric junctions, deletions, and insertions by PCR. Methods Mol Biol 226:511-516.
    • (2003) Methods Mol Biol , vol.226 , pp. 511-516
    • Pont-Kingdon, G.1
  • 34
    • 77957830356 scopus 로고    scopus 로고
    • E. coli genome manipulation by P1 transduction
    • Chapter 1, Unit 1.17
    • Thomason LC, Costantino N, Court DL. 2001. E. coli genome manipulation by P1 transduction. Curr Protoc Mol Biol Chapter 1:Unit 1.17. http://dx.doi.org/10.1002/0471142727.mb0117s79.
    • (2001) Curr Protoc Mol Biol
    • Thomason, L.C.1    Costantino, N.2    Court, D.L.3
  • 35
    • 0026485287 scopus 로고
    • Carbon and energy metabolism of atp mutants of Escherichia coli
    • Jensen PR, Michelsen O. 1992. Carbon and energy metabolism of atp mutants of Escherichia coli. J Bacteriol 174:7635-7641.
    • (1992) J Bacteriol , vol.174 , pp. 7635-7641
    • Jensen, P.R.1    Michelsen, O.2
  • 36
    • 84884586013 scopus 로고    scopus 로고
    • Metabolic engineering: past and future
    • Woolston BM, Edgar S, Stephanopoulos G. 2013. Metabolic engineering: past and future. Annu Rev Chem Biomol Eng 4:259-288. http://dx.doi.org/10.1146/annurev-chembioeng-061312-103312.
    • (2013) Annu Rev Chem Biomol Eng , vol.4 , pp. 259-288
    • Woolston, B.M.1    Edgar, S.2    Stephanopoulos, G.3
  • 37
    • 13244291348 scopus 로고    scopus 로고
    • Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli
    • Zhang Z, Gosset G, Barabote R, Gonzalez CS, Cuevas WA, Saier MH, Jr. 2005. Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli. J Bacteriol 187:980-990. http://dx.doi.org/10.1128/JB.187.3.980-990.2005.
    • (2005) J Bacteriol , vol.187 , pp. 980-990
    • Zhang, Z.1    Gosset, G.2    Barabote, R.3    Gonzalez, C.S.4    Cuevas, W.A.5    Saier, M.H.6
  • 38
    • 84930971149 scopus 로고    scopus 로고
    • CRISPathBrick: modular combinatorial assembly of type II-A CRISPR arrays for dCas9-mediated multiplex transcriptional repression in E. coli
    • Cress BF, Toparlak OD, Guleria S, Lebovich M, Stieglitz JT, Englaender JA, Jones JA, Linhardt RJ, Koffas MA. 2015. CRISPathBrick: modular combinatorial assembly of type II-A CRISPR arrays for dCas9-mediated multiplex transcriptional repression in E. coli. ACS Synth Biol 4:987-1000. http://dx.doi.org/10.1021/acssynbio.5b00012.
    • (2015) ACS Synth Biol , vol.4 , pp. 987-1000
    • Cress, B.F.1    Toparlak, O.D.2    Guleria, S.3    Lebovich, M.4    Stieglitz, J.T.5    Englaender, J.A.6    Jones, J.A.7    Linhardt, R.J.8    Koffas, M.A.9
  • 39
    • 80052021573 scopus 로고    scopus 로고
    • Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA
    • Xu P, Ranganathan S, Fowler ZL, Maranas CD, Koffas MA. 2011. Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA. Metab Eng 13:578-587. http://dx.doi.org/10.1016/j.ymben.2011.06.008.
    • (2011) Metab Eng , vol.13 , pp. 578-587
    • Xu, P.1    Ranganathan, S.2    Fowler, Z.L.3    Maranas, C.D.4    Koffas, M.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.