-
1
-
-
33847377573
-
A robustness-based approach to systems-oriented drug design
-
Kitano, H. (2007) A robustness-based approach to systems-oriented drug design. Nature Reviews Drug Discovery 6:202–210.
-
(2007)
Nature Reviews Drug Discovery
, vol.6
, pp. 202-210
-
-
Kitano, H.1
-
2
-
-
0031182215
-
The first years of the Protein Data Bank
-
Meyer, E. (1997) The first years of the Protein Data Bank. Protein Science 6:1591–97.
-
(1997)
Protein Science
, vol.6
, pp. 1591-1597
-
-
Meyer, E.1
-
4
-
-
85057221470
-
-
Available from
-
Philosophical Transactions of the Royal Society of London (2008) Available from http://www.journals.royalsoc.ac.uk/
-
(2008)
-
-
-
7
-
-
0038497542
-
A structure for deoxyribose nucleic acid
-
Watson, J. D., and F. H. C. Crick. (1953) A structure for deoxyribose nucleic acid. Nature 171:737–738.
-
(1953)
Nature
, vol.171
, pp. 737-738
-
-
Watson, J.D.1
Crick, F.H.C.2
-
9
-
-
5044227742
-
The evolution of molecular biology into systems biology
-
Westerhoff, H. V., and B. O. Palsson. (2004) The evolution of molecular biology into systems biology. Nature Biotechnology 22:1249–52.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 1249-1252
-
-
Westerhoff, H.V.1
Palsson, B.O.2
-
10
-
-
85057266530
-
-
Wikipedia: The free encyclopedia (2008)[cited]. Available from http://wikipedia.org/.
-
(2008)
-
-
-
11
-
-
85057215706
-
-
WikiWikiWeb: The first wiki (2008)[cited]. Available from http://www.wiki.org/wiki.cgi.
-
(2008)
-
-
-
12
-
-
1542288938
-
Global organisation of metabolic fluxes in the bacterium Escherichia coli
-
Almaas, L., et al. (2004) Global organisation of metabolic fluxes in the bacterium Escherichia coli. Nature 427:839–43.
-
(2004)
Nature
, vol.427
, pp. 839-843
-
-
Almaas, L.1
-
13
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M., et al. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 25(1):25–29.
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
-
14
-
-
85057265162
-
-
Biological Pathway Data Exchange format (2008) Available from http://www.biopax.org
-
(2008)
-
-
-
15
-
-
13444262395
-
The European Bioinformatics Institute’s data resources: Towards systems biology
-
Brooksbank, C., et al. (2005) The European Bioinformatics Institute’s data resources: Towards systems biology. Nucleic Acids Research 33 (Database issue), D46–53.
-
(2005)
Nucleic Acids Research
, vol.33
, pp. D46-D53
-
-
Brooksbank, C.1
-
16
-
-
1242274402
-
Flux coupling analysis of genome scale metabolic network reconstructions
-
Burgard, A. P., et al. (2004) Flux coupling analysis of genome scale metabolic network reconstructions. Genome Research 14:301–312.
-
(2004)
Genome Research
, vol.14
, pp. 301-312
-
-
Burgard, A.P.1
-
18
-
-
2342648924
-
-
Covert, M. W., et al. (2004) Nature 429:92–96.
-
(2004)
Nature
, vol.429
, pp. 92-96
-
-
Covert, M.W.1
-
19
-
-
85057240750
-
-
EMPProject (2008). Available from http://www.empproject.com
-
(2008)
-
-
-
20
-
-
0038311902
-
The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools
-
Famili, I., and B. O. Palsson. (2003) The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools. Biophysical Journal 85:16–26.
-
(2003)
Biophysical Journal
, vol.85
, pp. 16-26
-
-
Famili, I.1
Palsson, B.O.2
-
21
-
-
0036081122
-
LIGAND: Database of chemical compounds and reactions in biological pathways
-
Goto, S., et al. (2002) LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Research 30(1):402–404.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 402-404
-
-
Goto, S.1
-
22
-
-
0037342537
-
The Systems Biology Markup Language (SBML): A medium for representation and exchange of biochemical network models
-
Hucka, M., et al. (2003) The Systems Biology Markup Language (SBML): A medium for representation and exchange of biochemical network models. Bioinformatics 19(4):524–531.
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
-
23
-
-
33751324033
-
-
International Union of Biochemistry and Molecular Biology. IUBMB nomenclature (2008). Available from http://www.chem.qmul.ac.uk/iubmb/.
-
(2008)
IUBMB Nomenclature
-
-
-
24
-
-
2942612846
-
Using a quantitative blueprint to reprogram the dynamics of the flagella gene network
-
Kalir, S., and U. Alon. (2004) Using a quantitative blueprint to reprogram the dynamics of the flagella gene network. Cell 117:713–720.
-
(2004)
Cell
, vol.117
, pp. 713-720
-
-
Kalir, S.1
Alon, U.2
-
25
-
-
85057225335
-
-
KEGG: Kyoto Encyclopedia of Genes and Genomes. Available from http://www.genome.jp/kegg/
-
-
-
-
26
-
-
23444439817
-
Using process diagrams for the graphical representation of biological networks
-
Kitano, H., et al. (2005) Using process diagrams for the graphical representation of biological networks. Nature Biotechology 23(8):961–966.
-
(2005)
Nature Biotechology
, vol.23
, Issue.8
, pp. 961-966
-
-
Kitano, H.1
-
27
-
-
1042269472
-
Related articles, links minimal cut sets in biochemical reaction networks
-
20
-
Klamt, S., and E. D. Gilles. (2004) Related articles, links minimal cut sets in biochemical reaction networks. Bioinformatics 22;20(2):226–234.
-
(2004)
Bioinformatics
, vol.22
, Issue.2
, pp. 226-234
-
-
Klamt, S.1
Gilles, E.D.2
-
28
-
-
34147189103
-
Systems biology standards—The community speaks
-
Klipp, E., et al. (2007) Systems biology standards—The community speaks. Nature Biotechnology 25(4):390–391.
-
(2007)
Nature Biotechnology
, vol.25
, Issue.4
, pp. 390-391
-
-
Klipp, E.1
-
29
-
-
27744436367
-
Molecular systems biology at the crossroads: To know less about more, or to know more about less?
-
Latterich, M. (2005) Molecular systems biology at the crossroads: To know less about more, or to know more about less? Proteome Science 3:8.
-
(2005)
Proteome Science
, vol.3
, pp. 8
-
-
Latterich, M.1
-
30
-
-
28644433993
-
Minimum information requested in the annotation ofbio-chemical models (MIRIAM)
-
Le Novère et al. (2005) Minimum information requested in the annotation ofbio-chemical models (MIRIAM). Nature biotechnology 23(12):1509–1515.
-
(2005)
Nature Biotechnology
, vol.23
, Issue.12
, pp. 1509-1515
-
-
Novère, L.1
-
31
-
-
34548860112
-
The Edinburgh human metabolic network reconstruction and its functional analysis
-
Ma, H., et al. (2007) The Edinburgh human metabolic network reconstruction and its functional analysis. Molecular Systems Biology 3:135.
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 135
-
-
Ma, H.1
-
32
-
-
33846056843
-
Entrez gene: Gene-centered information at NCBI
-
Maglott, D., et al. (2007) Entrez gene: Gene-centered information at NCBI. Nucleic Acids Research 35:D26–31.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. D26-D31
-
-
Maglott, D.1
-
34
-
-
85057224402
-
-
Available from
-
MetaCyc (2008). Available from http://www.metacyc.org/
-
(2008)
-
-
-
35
-
-
11244341009
-
Elucidation and structural analysis of conserved pools for genome-scale metabolic reconstructions
-
Nikolaev, E. V., Burgard, A. P., and Maranas, C. D. (2005) Elucidation and structural analysis of conserved pools for genome-scale metabolic reconstructions. Biophysical Journal. 88:37–49.
-
(2005)
Biophysical Journal
, vol.88
, pp. 37-49
-
-
Nikolaev, E.V.1
Burgard, A.P.2
Maranas, C.D.3
-
36
-
-
85057256251
-
Comparison of network-based pathway analysis methods
-
Papin, J., et al. (2004) Comparison of network-based pathway analysis methods. Cell 117:689–690.
-
(2004)
Cell
, vol.117
, pp. 689-690
-
-
Papin, J.1
-
37
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a path-way-oriented perspective
-
Schilling, C. H., et al. (2000) Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a path-way-oriented perspective. Journal of Theoretical Biology 203:229–248.
-
(2000)
Journal of Theoretical Biology
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
-
38
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
-
Schuster, S., et al. (1999) Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering. Trends in Biotechnology 17:53–60.
-
(1999)
Trends in Biotechnology
, vol.17
, pp. 53-60
-
-
Schuster, S.1
-
39
-
-
0036188159
-
Exploring the pathway structure of metabolism: Decomposition into subnetworks and application to Mycoplasma pneumoniae
-
Schuster, S., et al. (2002) Exploring the pathway structure of metabolism: Decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics 18:351–361.
-
(2002)
Bioinformatics
, vol.18
, pp. 351-361
-
-
Schuster, S.1
-
40
-
-
85057226749
-
-
SEED (2008) Available from http://theseed.uchicago.edu/FIG/
-
(2008)
-
-
-
41
-
-
9044244532
-
The metabolic pathway collection from EMP: The enzymes and metabolic pathways database
-
Selkov, E., et al. (1996) The metabolic pathway collection from EMP: The enzymes and metabolic pathways database. Nucleic Acids Research 24:26–28.
-
(1996)
Nucleic Acids Research
, vol.24
, pp. 26-28
-
-
Selkov, E.1
-
42
-
-
33751340584
-
The Pathway Editor: A tool for managing complex biological networks
-
Sorokin, A. A., et al. (2006) The Pathway Editor: A tool for managing complex biological networks. IBM Journal of Research and Development 50(6):561–574.
-
(2006)
IBM Journal of Research and Development
, vol.50
, Issue.6
, pp. 561-574
-
-
Sorokin, A.A.1
-
44
-
-
33644876253
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D. L., et al. (2006) Database resources of the National Center for Biotechnology Information. Nucleic Acids Research. 34(Database issue):D173–180.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. D173-D180
-
-
Wheeler, D.L.1
-
45
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
Wu, C. H., et al. (2006) The Universal Protein Resource (UniProt): An expanding universe of protein information. Nucleic Acids Research 34:D187–191.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. D187-D191
-
-
Wu, C.H.1
-
46
-
-
85057283656
-
-
Apache Software Foundation. Apache Derby (2008)[cited]. Available from http://db.apache.org/derby/.
-
(2008)
Apache Derby
-
-
-
47
-
-
85057238809
-
-
Ariadne Genomics. PathwayStudio (2008)[cited]. Available from http://www.ari-adnegenomics.com/products/pscentral/.
-
(2008)
Pathwaystudio
-
-
-
49
-
-
0036081345
-
GenBank
-
Benson, D., I. Karsch-Mizrachi, D. Lipman, J. Ostell, B. Rapp, and D. Wheeler. (2002) GenBank. Nucleic Acids Research 30:17–20.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 17-20
-
-
Benson, D.1
Karsch-Mizrachi, I.2
Lipman, D.3
Ostell, J.4
Rapp, B.5
Wheeler, D.6
-
51
-
-
85057257971
-
-
University of Pennsylvania. Bio Sketch Pad
-
Biocomputation Group, University of Pennsylvania. Bio Sketch Pad (2008)[cited]. Available from http://www.cis.upenn.edu/biocomp/new_html/biosketch.php3.
-
(2008)
-
-
-
53
-
-
29244482315
-
Barriers to progress in systems biology
-
Cassman, M. (2005) Barriers to progress in systems biology. Nature 438(7071):1079.
-
(2005)
Nature
, vol.438
, Issue.7071
, pp. 1079
-
-
Cassman, M.1
-
54
-
-
0035234673
-
A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems
-
12.1–12.10
-
Cook, D., J. Farley, and S. Tapscott. (2001) A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems. Genome Biology 2(4):12.1–12.10.
-
(2001)
Genome Biology
, vol.2
, Issue.4
-
-
Cook, D.1
Farley, J.2
Tapscott, S.3
-
55
-
-
0036326896
-
PATIKA: An integrated visual environment for collaborative construction and analysis of cellular pathways
-
Demir, E., O. Babur, U. Dogrusoz, A. Gursoy, G. Nisanci, R. Cetin-Atalay, and M. Ozturk. (2002) PATIKA: An integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinformatics 18(7):996–1003.
-
(2002)
Bioinformatics
, vol.18
, Issue.7
, pp. 996-1003
-
-
Demir, E.1
Babur, O.2
Dogrusoz, U.3
Gursoy, A.4
Nisanci, G.5
Cetin-Atalay, R.6
Ozturk, M.7
-
56
-
-
85057249994
-
-
Available from
-
Eclipse (2008) Available from http://www.eclipse.org
-
(2008)
-
-
-
57
-
-
85057289030
-
-
Edinburgh Pathway Editor (2008). Available from http://www.bioinformatics. ed.ac.uk/epe/
-
(2008)
-
-
-
58
-
-
17444426131
-
VitaPad: Visualization tools for the analysis of pathway data
-
Holford, M., N. Li, P. Nadkarni, and H. Zhao. (2005) VitaPad: Visualization tools for the analysis of pathway data. Bioinformatics 21(8):1596–1602.
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1596-1602
-
-
Holford, M.1
Li, N.2
Nadkarni, P.3
Zhao, H.4
-
59
-
-
85057277586
-
-
PathwayLab
-
InNetics. PathwayLab (2008)[cited]. Available from http://innetics.com/path-waylab_overview.htm.
-
(2008)
-
-
-
60
-
-
85057235710
-
-
Institute for Systems Biology. BioTapestry (2008)[cited]. Available from http://labs.systemsbiology.net/bolouri/software/BioTapestry/.
-
(2008)
Biotapestry
-
-
-
62
-
-
23444439817
-
Using process diagrams for the graphical representation of biological networks
-
Kitano, H., A. Funahashi, Y. Matsuoka, and K. Oda. (2005) using process diagrams for the graphical representation of biological networks. Nature Biotechnology 23(8):961–66.
-
(2005)
Nature Biotechnology
, vol.23
, Issue.8
, pp. 961-966
-
-
Kitano, H.1
Funahashi, A.2
Matsuoka, Y.3
Oda, K.4
-
63
-
-
0032776303
-
Molecular interaction map of the mammalian cell cycle control and DNA repair systems
-
Kohn, K. (1999) Molecular interaction map of the mammalian cell cycle control and DNA repair systems. Molecular Biology of the Cell 10(8):2703–34.
-
(1999)
Molecular Biology of the Cell
, vol.10
, Issue.8
, pp. 2703-2734
-
-
Kohn, K.1
-
64
-
-
0038027881
-
Molecular interaction maps as information organizers and simulation guides
-
Kohn, K. (2001) Molecular interaction maps as information organizers and simulation guides. Chaos 11(1):84–97.
-
(2001)
Chaos
, vol.11
, Issue.1
, pp. 84-97
-
-
Kohn, K.1
-
65
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma, H., and A. Zeng. (2003) Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 19(2):270–77.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 270-277
-
-
Ma, H.1
Zeng, A.2
-
67
-
-
85057245822
-
-
NetBuilder Development Team. NetBuilder home (2008)[cited]. Available from http://strc.herts.ac.uk/bio/maria/NetBuilder/.
-
(2008)
Netbuilder Home
-
-
-
68
-
-
85057230509
-
-
Nomenclature Committee of the International Union of Biochemistry and Molecular Biology. Enzyme Nnomenclature (2008)[cited]. Available from http://www.chem.qmul.ac.uk/iubmb/enzyme/.
-
(2008)
Enzyme Nnomenclature
-
-
-
69
-
-
0032919364
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Ogata, H., S. Goto, K. Sato, W. Fujibuchi, H. Bono, and M. Kanehisa. (1999) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Research 27(1):29–34.
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.1
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
70
-
-
85057280862
-
-
Protein Lounge. Pathway Builder tool (2008)[cited]. Available from http://www.proteinlounge.com/pathwaybuilder.asp.
-
(2008)
Pathway Builder Tool
-
-
-
71
-
-
65349191483
-
-
Research Collaboratory for Structural Bioinformatics. RCSB Protein Data Bank (2008)[cited]. Available from http://www.rcsb.org.
-
(2008)
RCSB Protein Data Bank
-
-
-
72
-
-
33751340584
-
The Pathway Editor: A tool for managing complex biological networks
-
Sorokin, A., K. Paliy, A. Selkov, O. V. Demin, S. Dronov, P. Ghazal, and I. Goryanin. (2006) The Pathway Editor: A tool for managing complex biological networks. IBM Journal of Research and Development 50(6):561–573.
-
(2006)
IBM Journal of Research and Development
, vol.50
, Issue.6
, pp. 561-573
-
-
Sorokin, A.1
Paliy, K.2
Selkov, A.3
Demin, O.V.4
Dronov, S.5
Ghazal, P.6
Goryanin, I.7
-
75
-
-
43149087014
-
-
U.S. National Institutes of Health. PubMed Central (2008)[cited]. Available from http://www.pubmedcentral.nih.gov.
-
(2008)
Pubmed Central
-
-
-
76
-
-
18444400543
-
The Protein Information Resource: An integrated public resource of functional annotation of proteins
-
Wu, C., H. Huang, L. Arminski, J. Castro-Alvear, Y. Chen, Z. Hu, R. Ledley, K. Lewis, H. Mewes, B. Orcutt, B. Suzek, A. Tsugita, C. Vinayaka, L. Yeh, J. Zhang, and W. Barker. (2002) The Protein Information Resource: An integrated public resource of functional annotation of proteins. Nucleic Acids Research 30(1):35–37.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 35-37
-
-
Wu, C.1
Huang, H.2
Arminski, L.3
Castro-Alvear, J.4
Chen, Y.5
Hu, Z.6
Ledley, R.7
Lewis, K.8
Mewes, H.9
Orcutt, B.10
Suzek, B.11
Tsugita, A.12
Vinayaka, C.13
Yeh, L.14
Zhang, J.15
Barker, W.16
-
77
-
-
0031021873
-
Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes
-
Bakker, B. M., et al. Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes. (1997) Journal of Biological Chemistry 272(6):3207.
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.6
, pp. 3207
-
-
Bakker, B.M.1
-
78
-
-
0036298294
-
Metabolomics: Quantification of intracellular metabolite dynamics
-
Buchholz, A., et al. Metabolomics: quantification of intracellular metabolite dynamics. (2002) Biomolecular Engineering 19:5.
-
(2002)
Biomolecular Engineering
, vol.19
, pp. 5
-
-
Buchholz, A.1
-
79
-
-
0035881207
-
Quantification of intracellular metabolites in Escherichia coli K12 using liquid chromatographic-electrospray ionization tandem mass spectrometric techniques
-
Buchholz, A., R. Takors, and C. Wandrey. Quantification of intracellular metabolites in Escherichia coli K12 using liquid chromatographic-electrospray ionization tandem mass spectrometric techniques. (2001) Analytical Biochemistry 295:129.
-
(2001)
Analytical Biochemistry
, vol.295
, pp. 129
-
-
Buchholz, A.1
Takors, R.2
Wandrey, C.3
-
80
-
-
0035365847
-
An integrated study of threonine-pathway enzyme kinetics in Escherichia coli
-
Chassagnole, C., et al. An integrated study of threonine-pathway enzyme kinetics in Escherichia coli. (2001a) Biochemical Journal 356:415.
-
(2001)
Biochemical Journal
, vol.356
, pp. 415
-
-
Chassagnole, C.1
-
81
-
-
0035367217
-
Control of the threonine-synthesis pathway in Escherichia coli: A theoretical and experimental approach
-
Chassagnole, C., et al. Control of the threonine-synthesis pathway in Escherichia coli: a theoretical and experimental approach. (2001b) Biochemical Journal 356:433.
-
(2001)
Biochemical Journal
, vol.356
, pp. 433
-
-
Chassagnole, C.1
-
83
-
-
37949015401
-
Kinetic modelling as a modern technology to explore and modify living cells
-
edited by G. Ciobanu and G. Rozenberg. Springer, Berlin
-
Demin, O. V., et al. (2004) Kinetic modelling as a modern technology to explore and modify living cells. In Modelling in molecular biology, edited by G. Ciobanu and G. Rozenberg. Springer, Berlin.
-
(2004)
Modelling in Molecular Biology
-
-
Demin, O.V.1
-
85
-
-
0032825010
-
Mathematical simulation and analysis of cellular metabolism and regulation
-
Goryanin I, Hodgman TC, Selkov E. Mathematical simulation and analysis of cellular metabolism and regulation. (1999) Bioinformatics;15(9):749–58.
-
(1999)
Bioinformatics
, vol.15
, Issue.9
, pp. 749-758
-
-
Goryanin, I.1
Hodgman, T.C.2
Selkov, E.3
-
86
-
-
0033570090
-
Quantification of short term signaling by the epidermal growth factor receptor
-
Kholodenko, B. N., et al. Quantification of short term signaling by the epidermal growth factor receptor. (1999) Journal of Biological Chemistry 274(42):30169.
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.42
, pp. 30169
-
-
Kholodenko, B.N.1
-
87
-
-
77956172394
-
Kinetic model of photosystem II of high plants
-
Lebedeva, G. V., et al. Kinetic model of photosystem II of high plants. (2000) Journal of Physical Chemistry (Moscow) 74:1897.
-
(2000)
Journal of Physical Chemistry (Moscow)
, vol.74
, pp. 1897
-
-
Lebedeva, G.V.1
-
88
-
-
0019132908
-
Adenylate degradation in Escherichia coli. The role of AMP nucleosidase and properties of the purified enzyme
-
Leung, H. B., and V. L. Schramm. Adenylate degradation in Escherichia coli. The role of AMP nucleosidase and properties of the purified enzyme. (1980) Journal of Biological Chemistry 255(22):10867.
-
(1980)
Journal of Biological Chemistry
, vol.255
, Issue.22
, pp. 10867
-
-
Leung, H.B.1
Schramm, V.L.2
-
89
-
-
23244446113
-
Signal processing at the Ras circuit: What shapes Ras activation patterns?
-
Markevich, N. I., et al. Signal processing at the Ras circuit: what shapes Ras activation patterns? (2004) Systems Biology (Stevenage) 1(1):104.
-
(2004)
Systems Biology (Stevenage)
, vol.1
, Issue.1
, pp. 104
-
-
Markevich, N.I.1
-
90
-
-
0037039289
-
Temperature dependence of the epidermal growth factor receptor signaling network can be accounted for by a kinetic model
-
Moehren, G., et al. Temperature dependence of the epidermal growth factor receptor signaling network can be accounted for by a kinetic model. (2002) Biochemistry 41:306.
-
(2002)
Biochemistry
, vol.41
, pp. 306
-
-
Moehren, G.1
-
92
-
-
33750544499
-
The kinetic model of the shikimate pathway as a tool to optimize enzyme assays for high-throughput screening
-
Noble, M., et al. The kinetic model of the shikimate pathway as a tool to optimize enzyme assays for high-throughput screening. (2006) Biotechnology and Bioengineering 95:560.
-
(2006)
Biotechnology and Bioengineering
, vol.95
, pp. 560
-
-
Noble, M.1
-
93
-
-
0035366719
-
Threonine synthesis from aspartate in Escherichia coli cell-free extracts: Pathway dynamics
-
Rais, B., et al. Threonine synthesis from aspartate in Escherichia coli cell-free extracts: pathway dynamics. (2001) Biochemical Journal 356:425.
-
(2001)
Biochemical Journal
, vol.356
, pp. 425
-
-
Rais, B.1
-
94
-
-
0041783609
-
Regulatory levels of photosynthetic processes
-
Riznichenko, G. Yu., et al. Regulatory levels of photosynthetic processes. (2000) Biophysics (Moscow) 45:452.
-
(2000)
Biophysics (Moscow)
, vol.45
, pp. 452
-
-
Riznichenko, G.Y.1
-
95
-
-
0033562562
-
Automated sampling device for monitoring intracellular metabolite dynamics
-
Schaefer, U., Boos W, Takors R, Weuster-Botz D. Automated sampling device for monitoring intracellular metabolite dynamics. (1999) Analytical Biochemistry 270:88.
-
(1999)
Analytical Biochemistry
, vol.270
, pp. 88
-
-
Schaefer, U.1
Boos, W.2
Takors, R.3
Weuster-Botz, D.4
-
96
-
-
9044244532
-
The metabolic pathway collection from EMP: The enzymes and metabolic pathways database
-
Selkov, E., et al. The metabolic pathway collection from EMP: the enzymes and metabolic pathways database. (1996) Nucleic Acids Research 24:26.
-
(1996)
Nucleic Acids Research
, vol.24
, pp. 26
-
-
Selkov, E.1
-
97
-
-
0036081012
-
BRENDA, enzyme data and metabolic information
-
Schomburg, I., A. Chang, and D. Schomburg. BRENDA, enzyme data and metabolic information. (2002) Nucleic Acids Research 30:47.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 47
-
-
Schomburg, I.1
Chang, A.2
Schomburg, D.3
-
98
-
-
0030608156
-
Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations
-
Teusink, B., B. M. Bakker, and H. V. Westerhoff. Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations. (1996) Biochimica et Biophysia Acta 1275(3):204.
-
(1996)
Biochimica Et Biophysia Acta
, vol.1275
, Issue.3
, pp. 204
-
-
Teusink, B.1
Bakker, B.M.2
Westerhoff, H.V.3
-
100
-
-
0002492248
-
Complex oscillatory regimes in peroxidase-oxidase reaction
-
Fed’kina, V. R., and T. B. Bronnikova. (1995) Complex oscillatory regimes in peroxidase-oxidase reaction. Biophysics 40:36–47.
-
(1995)
Biophysics
, vol.40
, pp. 36-47
-
-
Fed’Kina, V.R.1
Bronnikova, T.B.2
-
101
-
-
0021477978
-
ODE methods for the solution of differential algebraic systems
-
Gear, C. W., and L. R. Petzold. (1984) ODE methods for the solution of differential algebraic systems. SIAM Journal on Numerical Analysis 21:716–28.
-
(1984)
SIAM Journal on Numerical Analysis
, vol.21
, pp. 716-728
-
-
Gear, C.W.1
Petzold, L.R.2
-
102
-
-
85057270831
-
-
Paper read at ISMB/ECCB Conference, 31 July–5 August, Glasgow, Scotland
-
Gizzatkulov, N., A. Klimov, G. Lebedeva, and O. Demin. (2004) DBsolve7: New update version to develop and analyze models of complex biological systems. Paper read at ISMB/ECCB Conference, 31 July–5 August, Glasgow, Scotland.
-
(2004)
Dbsolve7: New Update Version to Develop and Analyze Models of Complex Biological Systems
-
-
Gizzatkulov, N.1
Klimov, A.2
Lebedeva, G.3
Demin, O.4
-
103
-
-
0345279252
-
Modeling oscillations of two activi-ties--6-phosphofructo-2-kinase/fructoso-2,6-bisphosphatase in rat liver
-
Goldstein, B. N., and I. I. Goryanin. (1996) Modeling oscillations of two activi-ties--6-phosphofructo-2-kinase/fructoso-2,6-bisphosphatase in rat liver. Molecular Biology 30:976-983.
-
(1996)
Molecular Biology
, vol.30
, pp. 976-983
-
-
Goldstein, B.N.1
Goryanin, I.I.2
-
104
-
-
77956178386
-
NetSolve: Integrated development environment software for metabolic and enzymatic systems modeling
-
edited by H. V. Westerhoff, J. L. Snoep, F. E. Sluse, J. E. Wijker, and B. N. Holodenko. Biothermokinetics Press: Amsterdam
-
Goryanin, I. (1996) NetSolve: Integrated development environment software for metabolic and enzymatic systems modeling. In Biothermokinetics of the living cell, edited by H. V. Westerhoff, J. L. Snoep, F. E. Sluse, J. E. Wijker, and B. N. Holodenko. Biothermokinetics Press: Amsterdam.
-
(1996)
Biothermokinetics of the Living Cell
-
-
Goryanin, I.1
-
105
-
-
0032825010
-
DBsolve: Mathematical simulation and analysis of cellular metabolism and regulation
-
Goryanin, I., T. C. Hodgman, and E. Selkov. (1999) DBsolve: Mathematical simulation and analysis of cellular metabolism and regulation. Bioinformatics 15(9):749–58.
-
(1999)
Bioinformatics
, vol.15
, Issue.9
, pp. 749-758
-
-
Goryanin, I.1
Hodgman, T.C.2
Selkov, E.3
-
106
-
-
0041044208
-
Automation of modelling of multienzyme systems using databanks on enzyme and metabolic pathways (EMP)
-
Vienna: Austria
-
Goryanin, I., and K. Serdyuk. (1994) Automation of modelling of multienzyme systems using databanks on enzyme and metabolic pathways (EMP). In Proceedings of the IMACS Symposium on Mathematical Modelling. Vienna: Austria.
-
(1994)
Proceedings of the IMACS Symposium on Mathematical Modelling
-
-
Goryanin, I.1
Serdyuk, K.2
-
107
-
-
0001811061
-
A systematized collection of ODE solvers
-
edited by R. S. Stepleman, M. Carver, R. Peskin, W. F. Ames, and R. Vichnevetsky. Amsterdam: North Holland
-
Hindmarsh, A. C. (1983) A systematized collection of ODE solvers. In Scientific computing, edited by R. S. Stepleman, M. Carver, R. Peskin, W. F. Ames, and R. Vichnevetsky. Amsterdam: North Holland.
-
(1983)
Scientific Computing
-
-
Hindmarsh, A.C.1
-
109
-
-
85057237052
-
-
ISBSPb-Institute for Systems Biology SPb (2008). Available from http://www.insysbio.ru/
-
(2008)
-
-
-
110
-
-
0000169232
-
An algorithm for least squares re estimation of non linear parameters
-
Marquardt, D. W. (1963) An algorithm for least squares re estimation of non linear parameters. SIAM Journal 11:431–41.
-
(1963)
SIAM Journal
, vol.11
, pp. 431-441
-
-
Marquardt, D.W.1
-
111
-
-
0008489959
-
Biosynthetic Precursor Of Histidine
-
Adams, E.; L-Histidinal, A Biosynthetic Precursor Of Histidine J. Biol. Chem.; 217, 325 (1955).
-
(1955)
J. Biol. Chem.
, vol.217
, pp. 325
-
-
Adams, E.1
L-Histidinal, A.2
-
112
-
-
85057228136
-
Synthesis And Properties Of An-Amino Aldehyde
-
Adams. E. Synthesis And Properties Of An-Amino Aldehyde, Histidinal J. Biol. Chem. 21’7. 317 (1955).
-
(1955)
Histidinal J. Biol. Chem.
, vol.21
, pp. 317
-
-
Adams, E.1
-
113
-
-
0026514014
-
Equilibrium calculations on systems of biochemical reactions at specified pH and pMg
-
Alberty, R. A. (1992). Equilibrium calculations on systems of biochemical reactions at specified pH and pMg. Biophysical Chemistry 42:117–31.
-
(1992)
Biophysical Chemistry
, vol.42
, pp. 117-131
-
-
Alberty, R.A.1
-
114
-
-
0031552353
-
Allosteric activation increases the maximum velocity of E. Coli phosphofructokinase
-
Ausat, I., G. L. Bras, and J.-R. Garel. (1997) Allosteric activation increases the maximum velocity of E. coli phosphofructokinase. Journal of Molecular Biology 267:476–80.
-
(1997)
Journal of Molecular Biology
, vol.267
, pp. 476-480
-
-
Ausat, I.1
Bras, G.L.2
Garel, J.-R.3
-
115
-
-
0018185175
-
Phosphofructokinases from Escherichia coli
-
Babul, J. (1978) Phosphofructokinases from Escherichia coli. Journal of Biological Chemistry 253:4350–55.
-
(1978)
Journal of Biological Chemistry
, vol.253
, pp. 4350-4355
-
-
Babul, J.1
-
116
-
-
0025947170
-
Steady-state fluorescence of Escherichia coli phosphofructokinase reveals a regulatory role for ATP
-
Berger, S. A., and P. R. Evans. (1991) Steady-state fluorescence of Escherichia coli phosphofructokinase reveals a regulatory role for ATP. Biochemistry 30:8477–80.
-
(1991)
Biochemistry
, vol.30
, pp. 8477-8480
-
-
Berger, S.A.1
Evans, P.R.2
-
117
-
-
0014413329
-
Kinetic of the allosteric interactions of phosphofructokinase from Escherichia coli
-
Blangy, D., H. Buc, and J. Monod. (1968) Kinetic of the allosteric interactions of phosphofructokinase from Escherichia coli. Journal of Molecular Biology 31:13–35.
-
(1968)
Journal of Molecular Biology
, vol.31
, pp. 13-35
-
-
Blangy, D.1
Buc, H.2
Monod, J.3
-
118
-
-
0019316002
-
Kinetic, binding and ultrastructural properties of the beef heart adenine nucleotide carrier protein after incorporation into phospholipid vesicles
-
Brandolin, G., J. Doussiere, A. Gulik, T. Gulik-Krzywicki, G. J. M. Lauquin, and P. V. Vignais. (1980) Kinetic, binding and ultrastructural properties of the beef heart adenine nucleotide carrier protein after incorporation into phospholipid vesicles. Biochimica et Biophysica Acta 592:592–614.
-
(1980)
Biochimica Et Biophysica Acta
, vol.592
, pp. 592-614
-
-
Brandolin, G.1
Doussiere, J.2
Gulik, A.3
Gulik-Krzywicki, T.4
Lauquin, G.J.M.5
Vignais, P.V.6
-
119
-
-
0040467698
-
Role of lactose and its metabolic products in the introduction the lactose operon in Escherichia coli
-
Burstein, C., M. Cohn, A. Kepes, and J. Monod. (1965) Role of lactose and its metabolic products in the introduction the lactose operon in Escherichia coli. Biochimica et Biophysica Acta 95:634–39.
-
(1965)
Biochimica Et Biophysica Acta
, vol.95
, pp. 634-639
-
-
Burstein, C.1
Cohn, M.2
Kepes, A.3
Monod, J.4
-
120
-
-
0021265957
-
Kinetic mechanism of phosphofructokinase-2 from Escherichia coli. A mutant enzyme with defferent mechanism
-
Campos, G., V. Guixe, and J. Babul. (1984) Kinetic mechanism of phosphofructokinase-2 from Escherichia coli. A mutant enzyme with defferent mechanism. Journal of Biological Chemistry 259:6147–52.
-
(1984)
Journal of Biological Chemistry
, vol.259
, pp. 6147-6152
-
-
Campos, G.1
Guixe, V.2
Babul, J.3
-
121
-
-
0037025146
-
Dynamic modeling of the central carbon metabolism of Escherichia coli
-
Chassagnole, C., N. Noisommit-Rizzi, J. W. Schmid, K. Mauch, and M. Reuss. (2002) Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnology and Bioengineering 79:53–73.
-
(2002)
Biotechnology and Bioengineering
, vol.79
, pp. 53-73
-
-
Chassagnole, C.1
Noisommit-Rizzi, N.2
Schmid, J.W.3
Mauch, K.4
Reuss, M.5
-
122
-
-
0035969949
-
Mechanism for acivicin inactivation of triad glutamine amidotransferases
-
Chittur, S. V., T. J. Klem, C. M. Shafer, and V. J. Davisson. Mechanism for acivicin inactivation of triad glutamine amidotransferases (2001) Biochemistry 40:876–87.
-
(2001)
Biochemistry
, vol.40
, pp. 876-887
-
-
Chittur, S.V.1
Klem, T.J.2
Shafer, C.M.3
Davisson, V.J.4
-
123
-
-
50549159930
-
The kinetics of enzyme-catalyzed reactions with two or more substrates or products
-
Cleland, W. W. (1963) The kinetics of enzyme-catalyzed reactions with two or more substrates or products. Biochimica et Biophysica Acta 67:104–37.
-
(1963)
Biochimica Et Biophysica Acta
, vol.67
, pp. 104-137
-
-
Cleland, W.W.1
-
126
-
-
0027383273
-
Kinetic mechanism of Escherichia coli isocitrate dehydrogenase
-
Dean, A. M., and D. E. Koshland Kinetic mechanism of Escherichia coli isocitrate dehydrogenase (1993) Biochemistry 32:9302.
-
(1993)
Biochemistry
, vol.32
, pp. 9302
-
-
Dean, A.M.1
Koshland, D.E.2
-
127
-
-
85047693571
-
Kinetic model of imidazole glycerol phosphate synthetase of Escherichia coli
-
Demin, O. V., S. Dronov, I. I. Goryanin, and G. V. Lebedeva. (2004a) Kinetic model of imidazole glycerol phosphate synthetase of Escherichia coli. Biochemistry (Moscow) 69(12):1625–38.
-
(2004)
Biochemistry (Moscow)
, vol.69
, Issue.12
, pp. 1625-1638
-
-
Demin, O.V.1
Dronov, S.2
Goryanin, I.I.3
Lebedeva, G.V.4
-
128
-
-
85057265477
-
-
Demin, O. V., T. Y. Plyusnina, G. V. Lebedeva, E. A. Zobova, E. A. Metelkin, A. G. Kolupaev, I. I. Goryanin, and F. Tobin. (2005) Kinetic modelling of the E. coli metabolism. In Topics in current genetics, edited by L. Alberghina and H. V. Westerhoff. Springer, Berlin.
-
(2005)
Kinetic Modelling of the E. Coli Metabolism. in Topics in Current Genetics, Edited by L. Alberghina and H. V. Westerhoff. Springer, Berlin
-
-
Demin, O.V.1
Plyusnina, T.Y.2
Lebedeva, G.V.3
Zobova, E.A.4
Metelkin, E.A.5
Kolupaev, A.G.6
Goryanin, I.I.7
Tobin, F.8
-
129
-
-
0025863954
-
Substrate antagonism in the kinetic mechanism of E. Coli phosphofructokinase-1
-
Deville-Bonne, D., R. Laine, and J.-R. Garel. (1991) Substrate antagonism in the kinetic mechanism of E. coli phosphofructokinase-1. FEBS Letters 290:173–76.
-
(1991)
FEBS Letters
, vol.290
, pp. 173-176
-
-
Deville-Bonne, D.1
Laine, R.2
Garel, J.-R.3
-
130
-
-
0019207178
-
Further kinetic characterization of the non-allosteric phosphofructokinase from Escherichia coli K-12
-
Ewings, K. N., and H. W. Doelle. (1980) Further kinetic characterization of the non-allosteric phosphofructokinase from Escherichia coli K-12. Biochimica et Biophysica Acta 615:103–12.
-
(1980)
Biochimica Et Biophysica Acta
, vol.615
, pp. 103-112
-
-
Ewings, K.N.1
Doelle, H.W.2
-
131
-
-
0014216567
-
Glutamate dehydrogenase concentration as a determinant in the effect of purine nucleotides on enzyme activity
-
Frieden, C., and R. F. Colman. (1967) Glutamate dehydrogenase concentration as a determinant in the effect of purine nucleotides on enzyme activity. Journal of Biological Chemistry 242:4045–53.
-
(1967)
Journal of Biological Chemistry
, vol.242
, pp. 4045-4053
-
-
Frieden, C.1
Colman, R.F.2
-
133
-
-
0022226641
-
Effect of ATP on phosphofructokinase-2 from Escherichia coli
-
Guixe, V., and J. Babul. (1985) Effect of ATP on phosphofructokinase-2 from Escherichia coli. Journal of Biological Chemistry 260:11001–5.
-
(1985)
Journal of Biological Chemistry
, vol.260
, pp. 11001-11005
-
-
Guixe, V.1
Babul, J.2
-
135
-
-
0021506865
-
Binding and reactivity at the ‘glucose’ site of galactosyl-beta-galactosidase (Escherichia coli)
-
Huber, R. E., M. T. Gaunt, and K. L. Hurlburt. (1984) Binding and reactivity at the ‘glucose’ site of galactosyl-beta-galactosidase (Escherichia coli). Archives of Biochemistry and Biophysics 234(1):151–60.
-
(1984)
Archives of Biochemistry and Biophysics
, vol.234
, Issue.1
, pp. 151-160
-
-
Huber, R.E.1
Gaunt, M.T.2
Hurlburt, K.L.3
-
136
-
-
0017170906
-
A quantitation of the factors which affect the hydrolase and transgalactosylase activities of beta-galactosidase (E. coli) on lactose
-
Huber, R. E., G. Kurz, and K. Wallenfels. (1976) A quantitation of the factors which affect the hydrolase and transgalactosylase activities of beta-galactosidase (E. coli) on lactose. Biochemistry 15(9):1994–2001.
-
(1976)
Biochemistry
, vol.15
, Issue.9
, pp. 1994-2001
-
-
Huber, R.E.1
Kurz, G.2
Wallenfels, K.3
-
138
-
-
0015527295
-
Lac Repressor-operator interaction. VI. The natural inducer of the lac operon
-
Jobe, A., and S. Bourgeois. (1972) lac Repressor-operator interaction. VI. The natural inducer of the lac operon. Journal of Molecular Biology 69:397–408.
-
(1972)
Journal of Molecular Biology
, vol.69
, pp. 397-408
-
-
Jobe, A.1
Bourgeois, S.2
-
139
-
-
0034730195
-
Directed evolution of a (Beta alpha)8-barrel enzyme to catalyze related reactions in two different metabolic pathways
-
Jurgens, C., A. Strom, D. Wegener, S. Hettwer, M. Wilmanns, and R. Sterner. (2000) Directed evolution of a (beta alpha)8-barrel enzyme to catalyze related reactions in two different metabolic pathways. Proceedings of the National Academy of Sciences USA 97:9925–30.
-
(2000)
Proceedings of the National Academy of Sciences USA
, vol.97
, pp. 9925-9930
-
-
Jurgens, C.1
Strom, A.2
Wegener, D.3
Hettwer, S.4
Wilmanns, M.5
Sterner, R.6
-
140
-
-
0021186307
-
Control of mitochondrial oxidative phosphorylation
-
Kholodenko, B. N. (1984a) Control of mitochondrial oxidative phosphorylation. Journal of Theoretical Biology 107:179–88.
-
(1984)
Journal of Theoretical Biology
, vol.107
, pp. 179-188
-
-
Kholodenko, B.N.1
-
141
-
-
0021427169
-
The mitochondrial carrier of adenylates controls ATP production in the physiological range of respiration rates
-
Kholodenko, B. N. (1984b) The mitochondrial carrier of adenylates controls ATP production in the physiological range of respiration rates. Biofizika (Moscow) 29:453–58.
-
(1984)
Biofizika (Moscow)
, vol.29
, pp. 453-458
-
-
Kholodenko, B.N.1
-
143
-
-
0027254139
-
Imidazole glycerol phosphate synthase: The glutamine amidotransferase in histidine biosynthesis
-
Klem, T. J., and V. J. Davisson. Imidazole glycerol phosphate synthase: the glutamine amidotransferase in histidine biosynthesis (1993) Biochemistry 32:5177–86.
-
(1993)
Biochemistry
, vol.32
, pp. 5177-5186
-
-
Klem, T.J.1
Davisson, V.J.2
-
144
-
-
0019155420
-
The ADP-ATP translocation in mitochondria, a membrane potential controlled transport
-
Klingenberg, M. (1980) The ADP-ATP translocation in mitochondria, a membrane potential controlled transport. Journal of Membrane Biology 56:97–105.
-
(1980)
Journal of Membrane Biology
, vol.56
, pp. 97-105
-
-
Klingenberg, M.1
-
145
-
-
0017332369
-
Relation between the gradient of the ATP/ADP ratio and the membrane potential across the mitochondrial membrane
-
Klingenberg, M., and H. Rottenberg. (1977) Relation between the gradient of the ATP/ADP ratio and the membrane potential across the mitochondrial membrane. European Journal of Biochemistry 73:125–30.
-
(1977)
European Journal of Biochemistry
, vol.73
, pp. 125-130
-
-
Klingenberg, M.1
Rottenberg, H.2
-
146
-
-
0000581636
-
Synthesis of cell constituents from C2-units by a modified tricarboxylic acid cycle
-
Kornberg, H. L., and H. A. Krebs. Synthesis of cell constituents from C2-units by a modified tricarboxylic acid cycle.(1957) Nature 179:988.
-
(1957)
Nature
, vol.179
, pp. 988
-
-
Kornberg, H.L.1
Krebs, H.A.2
-
147
-
-
0013863816
-
Comparison of experimental binding data and theoretical models in proteins containing subunits
-
Koshland, D. E., G. Nemethy, and D. Filmer. (1966) Comparison of experimental binding data and theoretical models in proteins containing subunits. Biochemistry 5:365–84.
-
(1966)
Biochemistry
, vol.5
, pp. 365-384
-
-
Koshland, D.E.1
Nemethy, G.2
Filmer, D.3
-
148
-
-
0020440320
-
Phosphofructokinases from Escherichia coli
-
Kotlarz, D., and H. Buc. (1982) Phosphofructokinases from Escherichia coli. Methods in Enzymology 90:60–70.
-
(1982)
Methods in Enzymology
, vol.90
, pp. 60-70
-
-
Kotlarz, D.1
Buc, H.2
-
149
-
-
0020473267
-
Electrophoretic control of reconstituted adenine nucleotide translocation
-
Kraemer, R., and M. Klingenberg. (1982) Electrophoretic control of reconstituted adenine nucleotide translocation. Biochemistry 21:1082–89.
-
(1982)
Biochemistry
, vol.21
, pp. 1082-1089
-
-
Kraemer, R.1
Klingenberg, M.2
-
150
-
-
4243192154
-
Kinetic analysis of dissociative fermentative systems
-
Kurganov, B. I. (1968) Kinetic analysis of dissociative fermentative systems. Molecular Biology (Moscow) 2:430–46.
-
(1968)
Molecular Biology (Moscow)
, vol.2
, pp. 430-446
-
-
Kurganov, B.I.1
-
152
-
-
0011726786
-
Purification and properties of histidinol dehydrogenase from Salmonella typhimurium
-
Loper, J., and E. Adams. (1965) Purification and properties of histidinol dehydrogenase from Salmonella typhimurium. Journal of Biological Chemistry 240:788–95.
-
(1965)
Journal of Biological Chemistry
, vol.240
, pp. 788-795
-
-
Loper, J.1
Adams, E.2
-
153
-
-
0015147278
-
The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli
-
Lowry, O. H., J. Carter, J. B. Ward, and L. Glaser. The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli (1971) Journal of Biological Chemistry 246:6511.
-
(1971)
Journal of Biological Chemistry
, vol.246
, pp. 6511
-
-
Lowry, O.H.1
Carter, J.2
Ward, J.B.3
Glaser, L.4
-
154
-
-
33646172301
-
Mathematical modeling of mitochondrial adenine nucleotide translocase
-
Metelkin, E., I. Goryanin, and O. Demin. (2006) Mathematical modeling of mitochondrial adenine nucleotide translocase. Biophysical Journal 90:423–32.
-
(2006)
Biophysical Journal
, vol.90
, pp. 423-432
-
-
Metelkin, E.1
Goryanin, I.2
Demin, O.3
-
156
-
-
0033954767
-
Locations of the regulatory sites for isocitrate dehydrogenase kinase/phosphatase
-
Miller, S. P., R. Chen, E. J. Karschnia, et al. (2000) Locations of the regulatory sites for isocitrate dehydrogenase kinase/phosphatase. Journal of Biological Chemistry 275(2):833.
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.2
, pp. 833
-
-
Miller, S.P.1
Chen, R.2
Karschnia, E.J.3
-
157
-
-
33947723615
-
Kinetic model of Escherichia coli isocitrate dehydrogenase functioning and regulation
-
Mogilevskaya, E. A., G. V. Lebedeva, I. I. Goryanin, and O. V. Demin. (2007) Kinetic model of Escherichia coli isocitrate dehydrogenase functioning and regulation. Biophysics (Moscow) 52(1):47–56.
-
(2007)
Biophysics (Moscow)
, vol.52
, Issue.1
, pp. 47-56
-
-
Mogilevskaya, E.A.1
Lebedeva, G.V.2
Goryanin, I.I.3
Demin, O.V.4
-
160
-
-
0022468586
-
Kinetic mechanism of Escherichia coli isocitrate dehydrogenase and its inhibition by glyoxylate and oxaloacetate
-
Nimmo, H. G. Kinetic mechanism of Escherichia coli isocitrate dehydrogenase and its inhibition by glyoxylate and oxaloacetate (1986) Biochemical Journal 234:317.
-
(1986)
Biochemical Journal
, vol.234
, pp. 317
-
-
Nimmo, H.G.1
-
161
-
-
0242497235
-
Structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
-
Pebay-Peyroula, E., C. Dahout-Gonzalez, R. Kahn, V. Trezeguet, G. J. M. Lauquin, and G. Brandolin. (2003) Structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside. Nature 426:39–44.
-
(2003)
Nature
, vol.426
, pp. 39-44
-
-
Pebay-Peyroula, E.1
Dahout-Gonzalez, C.2
Kahn, R.3
Trezeguet, V.4
Lauquin, G.J.M.5
Brandolin, G.6
-
163
-
-
0014592702
-
Adenine nucleotide translocation of mitochondria: Kinetics of the adenine nucleotide exchange
-
Pfaff, E., H. W. Heldt, and M. Klingenberg. (1969) Adenine nucleotide translocation of mitochondria: Kinetics of the adenine nucleotide exchange. European Journal of Biochemistry 10:484–93.
-
(1969)
European Journal of Biochemistry
, vol.10
, pp. 484-493
-
-
Pfaff, E.1
Heldt, H.W.2
Klingenberg, M.3
-
164
-
-
0035799364
-
Persistent Binding of MgADP to the E187A Mutant of Escherichia coli Phosphofructokinase in the Absence of allosteric Effects
-
Pham, A. S., F. Janiak-Spens and G.D.Reinhart, “Persistent Binding of MgADP to the E187A Mutant of Escherichia coli Phosphofructokinase in the Absence of allosteric Effects,” Biochemistry 40, 4140–4149 (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 4140-4149
-
-
Pham, A.S.1
Janiak-Spens, F.2
Reinhart, G.D.3
-
165
-
-
0035860706
-
Pre-steady state Quantification of the Allosteric Influence of Escherichia coli Phophofuctokinase
-
Pham A. S. and G.D.Reinhart, “Pre-steady state Quantification of the Allosteric Influence of Escherichia coli Phophofuctokinase,” J Biol Chem 276, 34388–34395 (2001).
-
(2001)
J Biol Chem
, vol.276
, pp. 34388-34395
-
-
Pham, A.S.1
Reinhart, G.D.2
-
166
-
-
0016833259
-
Generalization of the model by Monod, Wyman and Changeux fro the case of reversible monosubstrate reaction S↔P
-
Popova, S. V., and E. E. Sel’kov. (1975) Generalization of the model by Monod, Wyman and Changeux fro the case of reversible monosubstrate reaction S↔P. FEBS Letters 53:269–73.
-
(1975)
FEBS Letters
, vol.53
, pp. 269-273
-
-
Popova, S.V.1
Sel’Kov, E.E.2
-
167
-
-
0017085621
-
A generalization of the Monod-Wyman-Changeux model for the case of multisubstrate reactions
-
Popova, S. V., and E. E. Sel’kov. (1976) A generalization of the Monod-Wyman-Changeux model for the case of multisubstrate reactions. Molecular Biology (Moscow) 10:1116–26.
-
(1976)
Molecular Biology (Moscow)
, vol.10
, pp. 1116-1126
-
-
Popova, S.V.1
Sel’Kov, E.E.2
-
168
-
-
0018013048
-
Regulatory reversible enzymic reactions. Theoretical analysis
-
Popova, S. V., and E. E. Sel’kov. (1978) Regulatory reversible enzymic reactions. Theoretical analysis. Molecular Biology (Moscow) 12:1139–51.
-
(1978)
Molecular Biology (Moscow)
, vol.12
, pp. 1139-1151
-
-
Popova, S.V.1
Sel’Kov, E.E.2
-
171
-
-
9044244532
-
The metabolic pathway collection from EMP: The enzymes and metabolic pathways database
-
Selkov, E., S. Basmanova, T. Gaasterland, I. Goryanin, Y. Gretchkin, N. Maltsev, V. Nenashev, R. Overbeek, E. Panyushkina, L. Pronevitch, and I. Yunis. (1996) The metabolic pathway collection from EMP: The enzymes and metabolic pathways database. Nucleic Acids Research 24:26–28.
-
(1996)
Nucleic Acids Research
, vol.24
, pp. 26-28
-
-
Selkov, E.1
Basmanova, S.2
Gaasterland, T.3
Goryanin, I.4
Gretchkin, Y.5
Maltsev, N.6
Nenashev, V.7
Overbeek, R.8
Panyushkina, E.9
Pronevitch, L.10
Yunis, I.11
-
172
-
-
0036081012
-
BRENDA, enzyme data and metabolic information
-
Shomburg, I., A. Chang, and D. Shomburg. (2002) BRENDA, enzyme data and metabolic information. Nucleic Acids Research 30:47–49.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 47-49
-
-
Shomburg, I.1
Chang, A.2
Shomburg, D.3
-
173
-
-
0028927063
-
Use of mathematical models for predicting the metabolic effect of large-scale enzyme activity alterations. Application to enzyme deficiencies of red blood cells
-
Shuster, R. H., and G. H. Holzhutter. (1995) Use of mathematical models for predicting the metabolic effect of large-scale enzyme activity alterations. Application to enzyme deficiencies of red blood cells. European Journal of Biochemistry 229:403–18.
-
(1995)
European Journal of Biochemistry
, vol.229
, pp. 403-418
-
-
Shuster, R.H.1
Holzhutter, G.H.2
-
174
-
-
0023665375
-
Isocitrate dehydrogenase kinase/phosphatase exhibits an intrinsic adenosine triphos-phatase activity
-
Stueland, C. S., K. R. Eck, Stieglbauer K.T., and D. C. LaPorte. Isocitrate dehydrogenase kinase/phosphatase exhibits an intrinsic adenosine triphos-phatase activity. (1987) Journal of Biological Chemistry 262:16095.
-
(1987)
Journal of Biological Chemistry
, vol.262
, pp. 16095
-
-
Stueland, C.S.1
Eck, K.R.2
Stieglbauer, K.T.3
Laporte, D.C.4
-
175
-
-
0024211696
-
The isocitrate dehydrogenase phosphorylation cycle. Identification of the primary rate-limiting step
-
19475
-
Stueland, C. S., K. Gorden, and D. C. LaPorte. The isocitrate dehydrogenase phosphorylation cycle. Identification of the primary rate-limiting step. (1988) Journal of Biological Chemistry 263:19475.
-
(1988)
Journal of Biological Chemistry
, vol.263
-
-
Stueland, C.S.1
Gorden, K.2
Laporte, D.C.3
-
176
-
-
0345863934
-
The CyberCell Database (CCDB): A comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
-
Sundararaj, S., A. Guo, B. Habibi-Nazhad, M. Rouani, P. Stothard, M. Ellison, and D. S. Wishart. (2004) The CyberCell Database (CCDB): A comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Research 32:293–95.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 293-295
-
-
Sundararaj, S.1
Guo, A.2
Habibi-Nazhad, B.3
Rouani, M.4
Stothard, P.5
Ellison, M.6
Wishart, D.S.7
-
178
-
-
0030690267
-
A mutant phosphofructokinase produces a futile cycle during gluconeogenesis in Escherichia coli
-
Torres, J. C., V. Guixe, and J. Babul. (1997) A mutant phosphofructokinase produces a futile cycle during gluconeogenesis in Escherichia coli. Biochemical Journal 327:675–84.
-
(1997)
Biochemical Journal
, vol.327
, pp. 675-684
-
-
Torres, J.C.1
Guixe, V.2
Babul, J.3
-
179
-
-
0016220098
-
The kinetics of pig heart tri-phosphopyridine nucleotide-isocitrate dehydrogenase. I. Initial velocity, substrate and product inhibition, and isotope exchange studies
-
Uhr, M. L., V. W. Thompson, and W. W. Cleland. The kinetics of pig heart tri-phosphopyridine nucleotide-isocitrate dehydrogenase. I. Initial velocity, substrate and product inhibition, and isotope exchange studies (1974) Journal of Biological Chemistry 249:2920.
-
(1974)
Journal of Biological Chemistry
, vol.249
, pp. 2920
-
-
Uhr, M.L.1
Thompson, V.W.2
Cleland, W.W.3
-
181
-
-
0002648889
-
Molecular aspects of structure-function relationships in mitochondrial adenine nucleotide carrier
-
edited by V. Bengha. Paris: CRC Press
-
Vignais, P. V., M. R. Block, F. Boulay, G. Brandolin, and G. L. M. Lauguin. (1985) Molecular aspects of structure-function relationships in mitochondrial adenine nucleotide carrier. In Structure and properties of cell membranes, edited by V. Bengha. Paris: CRC Press.
-
(1985)
Structure and Properties of Cell Membranes
-
-
Vignais, P.V.1
Block, M.R.2
Boulay, F.3
Brandolin, G.4
Lauguin, G.L.M.5
-
182
-
-
0021149774
-
Determination of flux through the branch point of two metabolic cycles. The tricarboxylic acid cycle and the glyoxylate shunt
-
Walsh, K., and D. E. Koshland, Jr. Determination of flux through the branch point of two metabolic cycles. The tricarboxylic acid cycle and the glyoxylate shunt. (1984) Journal of Biological Chemistry 259:9646.
-
(1984)
Journal of Biological Chemistry
, vol.259
, pp. 9646
-
-
Walsh, K.1
Koshland, D.E.2
-
183
-
-
0015988609
-
The control of pyruvate kinases of Escherichia coli
-
Waygood, E. B., and B. D. Sanwal. (1974) The control of pyruvate kinases of Escherichia coli. Journal of Biological Chemistry 249:265–74.
-
(1974)
Journal of Biological Chemistry
, vol.249
, pp. 265-274
-
-
Waygood, E.B.1
Sanwal, B.D.2
-
186
-
-
0345004055
-
Fumarase
-
Alberty, R. A. (1961) Fumarase. The Enzymes 5(B):531.
-
(1961)
The Enzymes
, vol.5
, Issue.B
, pp. 531
-
-
Alberty, R.A.1
-
187
-
-
0025366343
-
Oxalyl hydroxamates as reaction-inter-mediate analogs for ketol-acid reductoisomerase
-
Aulabaugh, A., and J. V. Schloss. (1990) Oxalyl hydroxamates as reaction-inter-mediate analogs for ketol-acid reductoisomerase. Biochemistry 29:2824.
-
(1990)
Biochemistry
, vol.29
, pp. 2824
-
-
Aulabaugh, A.1
Schloss, J.V.2
-
188
-
-
0023626886
-
Physiological implications of the specificity of acetohydroxy acid synthase isozymes of enteric bacteria
-
Barak, Z., D. M. Chipman, and N. Gollop. (1987) Physiological implications of the specificity of acetohydroxy acid synthase isozymes of enteric bacteria. Journal of Bacteriology 169:3750.
-
(1987)
Journal of Bacteriology
, vol.169
, pp. 3750
-
-
Barak, Z.1
Chipman, D.M.2
Gollop, N.3
-
189
-
-
0035797880
-
Binding and activation of thiamin diphosphate in acetohydroxy acid synthase
-
Bar-Ilan, A. (2001) Binding and activation of thiamin diphosphate in acetohydroxy acid synthase. Biochemistry 40:11946.
-
(2001)
Biochemistry
, vol.40
, pp. 11946
-
-
Bar-Ilan, A.1
-
190
-
-
0021771485
-
The influence of membrane potentials on reaction rates. Control in free-energy-transducing systems
-
Boork, J., and H. Wennerstrom. (1984) The influence of membrane potentials on reaction rates. Control in free-energy-transducing systems. Biochimica et Biophysica Acta 767:314.
-
(1984)
Biochimica Et Biophysica Acta
, vol.767
, pp. 314
-
-
Boork, J.1
Wennerstrom, H.2
-
191
-
-
0024287233
-
Kinetic studies of chicken and turkey liver mitochondrial aspartate aminotransferase
-
Cascante, M., and A. Cortes. (1988) Kinetic studies of chicken and turkey liver mitochondrial aspartate aminotransferase. Biochemical Journal 250:805.
-
(1988)
Biochemical Journal
, vol.250
, pp. 805
-
-
Cascante, M.1
Cortes, A.2
-
192
-
-
0000287439
-
Succinic thiokinase. I. Purification of the enzyme from pig heart
-
1961
-
Cha, S., and R. E. Parks. (1964a) Succinic thiokinase. I. Purification of the enzyme from pig heart. Journal of Biological Chemistry 239:1961.
-
(1964)
Journal of Biological Chemistry
, vol.239
-
-
Cha, S.1
Parks, R.E.2
-
193
-
-
37949019335
-
Succinic thiokinase. II. Kinetic studies: Initial velocity, product inhibition, and effect of arsenate
-
1968
-
Cha, S., and R. E. Parks. (1964b) Succinic thiokinase. II. Kinetic studies: Initial velocity, product inhibition, and effect of arsenate. Journal of Biological Chemistry 239:1968.
-
(1964)
Journal of Biological Chemistry
, vol.239
-
-
Cha, S.1
Parks, R.E.2
-
194
-
-
0037025146
-
Dynamic modeling of the central carbon metabolism of Escherichia coli
-
Chassagnole, C. (2002) Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnology and Bioengineering 79:53.
-
(2002)
Biotechnology and Bioengineering
, vol.79
, pp. 53
-
-
Chassagnole, C.1
-
195
-
-
0024977333
-
Mechanism of ketol acid reductoisomerase. Steady-state analysis and metal ion requirement
-
Chunduru, S. K., G. T. Mrachko, and K. C. Calvo. (1998) Mechanism of ketol acid reductoisomerase. Steady-state analysis and metal ion requirement. Biochemistry 28:486.
-
(1998)
Biochemistry
, vol.28
, pp. 486
-
-
Chunduru, S.K.1
Mrachko, G.T.2
Calvo, K.C.3
-
196
-
-
50549159930
-
The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations
-
Cleland, W. W. (1963) The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations. Biochimica et Biophysica Acta 67:104.
-
(1963)
Biochimica Et Biophysica Acta
, vol.67
, pp. 104
-
-
Cleland, W.W.1
-
197
-
-
34247380099
-
Kinetic model of imidazole glycerol phosphate synthetase of Escherichia coli
-
Demin, O. V., et al. (2004) Kinetic model of imidazole glycerol phosphate synthetase of Escherichia coli. Biokhimiya 69:1625.
-
(2004)
Biokhimiya
, vol.69
, pp. 1625
-
-
Demin, O.V.1
-
198
-
-
85057254857
-
-
Topics in current genetics. In edited by L. Alberghina and H. V. Westerhoff. Springer Berlin
-
Demin, O. V., et al. Kinetic modelling of the E. coli metabolism. (2005) Topics in current genetics. In edited by L. Alberghina and H. V. Westerhoff. Springer Berlin.
-
(2005)
Kinetic Modelling of the E. Coli Metabolism
-
-
Demin, O.V.1
-
199
-
-
0024285322
-
Asymmetric orientation of the reconstituted aspartate/glutamate carrier from mitochondria
-
Dierks, T., and R. Kramer. (1988) Asymmetric orientation of the reconstituted aspartate/glutamate carrier from mitochondria. Biochimica et Biophysica Acta 937:112.
-
(1988)
Biochimica Et Biophysica Acta
, vol.937
, pp. 112
-
-
Dierks, T.1
Kramer, R.2
-
201
-
-
0021352116
-
Purification and subunit composition of acetohydroxyacid synthase I from Escherichia coli K-12
-
Eoyang L, Silverman PM. (1984) Purification and subunit composition of acetohydroxyacid synthase I from Escherichia coli K-12. Journal of Bacteriology, 157(1):184–9
-
(1984)
Journal of Bacteriology
, vol.157
, Issue.1
, pp. 184-189
-
-
Eoyang, L.1
Silverman, P.M.2
-
202
-
-
0026698788
-
Glutamate-malate metabolism in liver mitochondria. A model constructed on the basis of mitochondrial levels of enzymes, specificity, dissociation constants, and stoichiometry of hetero-enzyme complexes
-
Fahien, L. A., and J. K. Teller. (1992) Glutamate-malate metabolism in liver mitochondria. A model constructed on the basis of mitochondrial levels of enzymes, specificity, dissociation constants, and stoichiometry of hetero-enzyme complexes. Journal of Biological Chemistry 267:10411.
-
(1992)
Journal of Biological Chemistry
, vol.267
, pp. 10411
-
-
Fahien, L.A.1
Teller, J.K.2
-
204
-
-
0015217148
-
The interrelationships of the various pathways forming gluconeogenic precursors in guinea pig liver mitochondria
-
Garber, A. J., and R. W. Hanson. (1971) The interrelationships of the various pathways forming gluconeogenic precursors in guinea pig liver mitochondria. Journal of Biological Chemistry 246:589.
-
(1971)
Journal of Biological Chemistry
, vol.246
, pp. 589
-
-
Garber, A.J.1
Hanson, R.W.2
-
205
-
-
0021795058
-
Inhibition of fumarase by S-2,3-dicarboxyaziridine
-
Greenhut, J., H. Umezawa, and F. B. Rudolph. (1985) Inhibition of fumarase by S-2,3-dicarboxyaziridine. Journal of Biological Chemistry 260:6684.
-
(1985)
Journal of Biological Chemistry
, vol.260
, pp. 6684
-
-
Greenhut, J.1
Umezawa, H.2
Rudolph, F.B.3
-
206
-
-
0027464149
-
Fumarate reductase activity of bovine heart succinate-ubiquinone reductase. New assay system and overall properties of the reaction
-
Grivennikova, V. G., et al. (1993) Fumarate reductase activity of bovine heart succinate-ubiquinone reductase. New assay system and overall properties of the reaction. Biochimica et Biophysica Acta 1140:282.
-
(1993)
Biochimica Et Biophysica Acta
, vol.1140
, pp. 282
-
-
Grivennikova, V.G.1
-
207
-
-
0021952904
-
Salicylate-induced loose coupling: Protonmotive force measurements
-
Haas, R., et al. (1985) Salicylate-induced loose coupling: protonmotive force measurements. Biochemical Pharmacology 34:900.
-
(1985)
Biochemical Pharmacology
, vol.34
, pp. 900
-
-
Haas, R.1
-
208
-
-
0027408857
-
Branched chain aminotransferase isoenzymes. Purification and characterization of the rat brain isoenzyme
-
Hall, T. R., et al. (1993) Branched chain aminotransferase isoenzymes. Purification and characterization of the rat brain isoenzyme. Journal of Biological Chemistry 268:3092.
-
(1993)
Journal of Biological Chemistry
, vol.268
, pp. 3092
-
-
Hall, T.R.1
-
209
-
-
0016499611
-
A kinetic study of the α-keto acid dehydrogenase complexes from pig heart mitochondria
-
Hamada, M. (1975) A kinetic study of the α-keto acid dehydrogenase complexes from pig heart mitochondria. Journal of Biochemistry 77:1047.
-
(1975)
Journal of Biochemistry
, vol.77
, pp. 1047
-
-
Hamada, M.1
-
210
-
-
0016811298
-
The steady state concentrations of coenzyme A-SH and coenzyme A thioester, citrate, and isocitrate during tricarbox-ylate cycle oxidations in rabbit heart mitochondria
-
Hansford RG, Johnson RN. (1975) The steady state concentrations of coenzyme A-SH and coenzyme A thioester, citrate, and isocitrate during tricarbox-ylate cycle oxidations in rabbit heart mitochondria. Journal of Biological Chemistry, 250(21):8361.
-
(1975)
Journal of Biological Chemistry
, vol.250
, Issue.21
, pp. 8361
-
-
Hansford, R.G.1
Johnson, R.N.2
-
211
-
-
0014409086
-
Kinetic studies on the mechanism of the malate dehydrogenase reaction
-
Heyde, E., and S. Ainsworth. (1968) Kinetic studies on the mechanism of the malate dehydrogenase reaction. Journal of Biological Chemistry 243:2413.
-
(1968)
Journal of Biological Chemistry
, vol.243
, pp. 2413
-
-
Heyde, E.1
Ainsworth, S.2
-
212
-
-
0032212916
-
Escherichia coli acetohydroxyacid synthase II mutants
-
Hill CM, Duggleby RG (1998) Escherichia coli acetohydroxyacid synthase II mutants.Biochemical Journal 335:653-661.
-
(1998)
Biochemical Journal
, vol.335
, pp. 653-661
-
-
Hill, C.M.1
Duggleby, R.G.2
-
215
-
-
0022985811
-
The central metabolic pathways of Escherichia coli: Relationship between flux and control at a branch point, efficiency of conversion to bio-mass, and excretion of acetate
-
Holms, W. H. (1986) The central metabolic pathways of Escherichia coli: Relationship between flux and control at a branch point, efficiency of conversion to bio-mass, and excretion of acetate. Current Topics in Cellular Regulation 28:69.
-
(1986)
Current Topics in Cellular Regulation
, vol.28
, pp. 69
-
-
Holms, W.H.1
-
216
-
-
0025760106
-
Reaction mechanism of the reconstituted oxoglutarate carrier from bovine heart mitochondria
-
Indiveri, C., et al. (1991) Reaction mechanism of the reconstituted oxoglutarate carrier from bovine heart mitochondria. European Journal of Biochemistry 198:339.
-
(1991)
European Journal of Biochemistry
, vol.198
, pp. 339
-
-
Indiveri, C.1
-
217
-
-
0023733427
-
Branched-chain amino acid aminotransferase of Escherichia coli: Overproduction and properties
-
Inoue, K., et al. (1988) Branched-chain amino acid aminotransferase of Escherichia coli: Overproduction and properties. Journal of Biochemistry 104:777.
-
(1988)
Journal of Biochemistry
, vol.104
, pp. 777
-
-
Inoue, K.1
-
219
-
-
0343327859
-
Effects of salicylate and other ben-zoates on oxidative enzymes of the tricarboxylic acid cycle in rat tissue homogenates
-
Kaplan, E. H., J. Kennedy, and J. Davis. (1954) Effects of salicylate and other ben-zoates on oxidative enzymes of the tricarboxylic acid cycle in rat tissue homogenates. Archives of Biochemistry 51:47.
-
(1954)
Archives of Biochemistry
, vol.51
, pp. 47
-
-
Kaplan, E.H.1
Kennedy, J.2
Davis, J.3
-
220
-
-
14444284291
-
Purification and properties of the phosphorilating enzyme from spinach
-
Kaufman, S., and S. G. A. Alivisatos. (1955) Purification and properties of the phosphorilating enzyme from spinach. Journal of Biological Chemistry 216:141.
-
(1955)
Journal of Biological Chemistry
, vol.216
, pp. 141
-
-
Kaufman, S.1
Alivisatos, S.G.A.2
-
221
-
-
0024658331
-
Structuro-kinetic organization of the tricarboxylic acid cycle in the active functioning of mitochondria
-
Kondrashova, M. N. (1989) Structuro-kinetic organization of the tricarboxylic acid cycle in the active functioning of mitochondria. Biofizika 34:450.
-
(1989)
Biofizika
, vol.34
, pp. 450
-
-
Kondrashova, M.N.1
-
222
-
-
0021403581
-
Dissociation constants of the succinate dehydrogenase complexes with succinate, fumarate and malonate
-
Kotlyar, A. B., and A. D. Vinogradov. (1984) Dissociation constants of the succinate dehydrogenase complexes with succinate, fumarate and malonate. Biokhimiya 49:511.
-
(1984)
Biokhimiya
, vol.49
, pp. 511
-
-
Kotlyar, A.B.1
Vinogradov, A.D.2
-
223
-
-
0021907388
-
Aspartate aminotransferase isozymes from rabbit liver. Purification and properties
-
Kuramitsu, S. (1985) Aspartate aminotransferase isozymes from rabbit liver. Purification and properties. Journal of Biochemistry 97:1337.
-
(1985)
Journal of Biochemistry
, vol.97
, pp. 1337
-
-
Kuramitsu, S.1
-
224
-
-
0018385453
-
Kinetic properties of aspartate transport in rat heart mitochondrial inner membranes
-
La Noue, K. F., et al. (1979) Kinetic properties of aspartate transport in rat heart mitochondrial inner membranes. Archives of Biochemistry and Biophysics 195:578.
-
(1979)
Archives of Biochemistry and Biophysics
, vol.195
, pp. 578
-
-
la Noue, K.F.1
-
225
-
-
0018357196
-
Transaminase B from Escherichia coli: Quaternary structure, amino-terminal sequence, substrate specificity, and absence of a separate valine-α-ketoglutarate activity
-
Lee-Peng, F. C., M. A. Hermodson, and G. B. Kohlhaw. (1979) Transaminase B from Escherichia coli: Quaternary structure, amino-terminal sequence, substrate specificity, and absence of a separate valine-α-ketoglutarate activity. Journal of Bacteriology 139(2):339.
-
(1979)
Journal of Bacteriology
, vol.139
, Issue.2
, pp. 339
-
-
Lee-Peng, F.C.1
Hermodson, M.A.2
Kohlhaw, G.B.3
-
226
-
-
0029040725
-
Conversion of aldonic acids to their corresponding 2-keto-3-deoxy-analogs by the non-carbohydrate enzyme dihydroxy acid dehydratase (DHAD)
-
Limberg, G., W. Klaffke, and J. Thiem. (1995) Conversion of aldonic acids to their corresponding 2-keto-3-deoxy-analogs by the non-carbohydrate enzyme dihydroxy acid dehydratase (DHAD). Bioorganic & Medicinal Chemistry 3:487.
-
(1995)
Bioorganic & Medicinal Chemistry
, vol.3
, pp. 487
-
-
Limberg, G.1
Klaffke, W.2
Thiem, J.3
-
227
-
-
4243454319
-
The composition of the α-ketoglutarate dehydrogenase complex
-
Massey, V. (1960) The composition of the α-ketoglutarate dehydrogenase complex. Biochimica et Biophysica Acta 38:447.
-
(1960)
Biochimica Et Biophysica Acta
, vol.38
, pp. 447
-
-
Massey, V.1
-
228
-
-
0018363365
-
The effects of calcium ions and adenine nucleotides on the activity of pig heart 2-oxoglutarate dehydrogenase complex
-
McCormack, J. G., and R. M. Denton. (1979) The effects of calcium ions and adenine nucleotides on the activity of pig heart 2-oxoglutarate dehydrogenase complex. Biochemical Journal 180:533.
-
(1979)
Biochemical Journal
, vol.180
, pp. 533
-
-
McCormack, J.G.1
Denton, R.M.2
-
229
-
-
34548864752
-
Kinetic model of mitochondrial Krebs cycle: Unraveling the mechanism of salicylate hepato-toxic effects
-
Mogilevskaya, E., O. Demin, and I. Goryanin. (2006) Kinetic model of mitochondrial Krebs cycle: Unraveling the mechanism of salicylate hepato-toxic effects. Journal of Biological Physics 32(3–4):245.
-
(2006)
Journal of Biological Physics
, vol.32
, Issue.3-4
, pp. 245
-
-
Mogilevskaya, E.1
Demin, O.2
Goryanin, I.3
-
230
-
-
8544220660
-
Dihydroxy acid dehydrase: An enzyme involved in the biosynthesis of isoleucine and valine
-
Myers, J. W. (1961) Dihydroxy acid dehydrase: An enzyme involved in the biosynthesis of isoleucine and valine. Journal of Biological Chemistry 236:1414.
-
(1961)
Journal of Biological Chemistry
, vol.236
, pp. 1414
-
-
Myers, J.W.1
-
231
-
-
0028909355
-
Influence of calcium on NADH and succinate oxidation by rat heart submitochondrial particles
-
Panov, A. V., and Scaduto, R. C., Jr. (1995) Influence of calcium on NADH and succinate oxidation by rat heart submitochondrial particles. Archives of Biochemistry and Biophysics 316:815.
-
(1995)
Archives of Biochemistry and Biophysics
, vol.316
, pp. 815
-
-
Panov, A.V.1
Scaduto, R.C.2
-
232
-
-
0021212051
-
Enhanced rate of citrate export from cho-lesterol-rich hepatoma mitochondria
-
Parlo, R. A., and P. S. Coleman. (1984) Enhanced rate of citrate export from cho-lesterol-rich hepatoma mitochondria. Journal of Biological Chemistry 259(16):9997.
-
(1984)
Journal of Biological Chemistry
, vol.259
, Issue.16
, pp. 9997
-
-
Parlo, R.A.1
Coleman, P.S.2
-
234
-
-
0019765361
-
Regulation of volatile fatty acid uptake by mitochondrial acyl CoA synthetases of bovine liver
-
Ricks CA, Cook RM. (1981) Regulation of volatile fatty acid uptake by mitochondrial acyl CoA synthetases of bovine liver. J. Dairy Sci. 64, 2324–2335.
-
(1981)
J. Dairy Sci.
, vol.64
, pp. 2324-2335
-
-
Ricks, C.A.1
Cook, R.M.2
-
235
-
-
0021762956
-
Concentration of free oxaloacetate in the mitochondrial compartment of isolated liver cells
-
Siess, E. A., R. I. Kientsch-Engel, and O. H. Wieland. (1984) Concentration of free oxaloacetate in the mitochondrial compartment of isolated liver cells. Biochemical Journal 218:171.
-
(1984)
Biochemical Journal
, vol.218
, pp. 171
-
-
Siess, E.A.1
Kientsch-Engel, R.I.2
Wieland, O.H.3
-
236
-
-
0015956014
-
Regulation of mitochondrial α-ketoglutarate metabolism by product inhibition of α-ketoglutarate dehydrogenase
-
Smith, C. M., J. Bryla, and J. R. Williamson. (1974) Regulation of mitochondrial α-ketoglutarate metabolism by product inhibition of α-ketoglutarate dehydrogenase. Journal of Biological Chemistry 249:1497.
-
(1974)
Journal of Biological Chemistry
, vol.249
, pp. 1497
-
-
Smith, C.M.1
Bryla, J.2
Williamson, J.R.3
-
238
-
-
0030338661
-
Interaction of salicylate and ibuprofen with the carboxylic acid: CoA ligases from bovine liver mitochondria
-
Vessey D.A., Hu J., Kelly M. (1996) Interaction of salicylate and ibuprofen with the carboxylic acid: CoA ligases from bovine liver mitochondria. Journal of Biochemical Toxicology. 11, 73–78.
-
(1996)
Journal of Biochemical Toxicology
, vol.11
, pp. 73-78
-
-
Vessey, D.A.1
Hu, J.2
Kelly, M.3
-
239
-
-
0022991835
-
Succinate-ubiquinone reductase of the respiratory chain
-
Vinogradov, A. D. (1986) Succinate-ubiquinone reductase of the respiratory chain. Biokhimiya 51:1944.
-
(1986)
Biokhimiya
, vol.51
, pp. 1944
-
-
Vinogradov, A.D.1
-
240
-
-
0029798076
-
Isolation and characterization of subunits of acetohydroxy acid synthase isozyme III and reconstitution of the holo-enzyme
-
Vyazmensky, M., et al. (1996) Isolation and characterization of subunits of acetohydroxy acid synthase isozyme III and reconstitution of the holo-enzyme. Biochemistry 35:10339.
-
(1996)
Biochemistry
, vol.35
, pp. 10339
-
-
Vyazmensky, M.1
-
241
-
-
0034642216
-
Evidence for two distinct effector-binding sites in threonine deaminase by site-directed mutagenesis, kinetic, and binding experiments
-
Wessel, P. M., et al. (2000) Evidence for two distinct effector-binding sites in threonine deaminase by site-directed mutagenesis, kinetic, and binding experiments. Biochemistry 39:15136.
-
(2000)
Biochemistry
, vol.39
, pp. 15136
-
-
Wessel, P.M.1
-
242
-
-
0014082605
-
The redox state of free nico-tinamide-adenine dinucleotide in the cytoplasm and mitochondria of rat liver
-
Williamson, D. H., P. Lund, and H. A. Krebs. (1967) The redox state of free nico-tinamide-adenine dinucleotide in the cytoplasm and mitochondria of rat liver. Biochemical Journal. 103:514.
-
(1967)
Biochemical Journal
, vol.103
, pp. 514
-
-
Williamson, D.H.1
Lund, P.2
Krebs, H.A.3
-
243
-
-
0020475540
-
Binding of the intramitochondrial ADP and its relationship to adenine nucleotide translocation
-
Wilson, D. F., D. Nelson, and M. Erecinska. (1982) Binding of the intramitochondrial ADP and its relationship to adenine nucleotide translocation. FEBS Letters 143:228.
-
(1982)
FEBS Letters
, vol.143
, pp. 228
-
-
Wilson, D.F.1
Nelson, D.2
Erecinska, M.3
-
244
-
-
0014690560
-
Standard Gibbs free energy, enthalpy, and entropy changes as a function of pH and pMg for several reactions involving adenosine phosphates
-
Alberty, R. A. Standard Gibbs free energy, enthalpy, and entropy changes as a function of pH and pMg for several reactions involving adenosine phosphates (1969) Journal of Biological Chemistry 244:3290.
-
(1969)
Journal of Biological Chemistry
, vol.244
, pp. 3290
-
-
Alberty, R.A.1
-
245
-
-
0019887788
-
Characterization of the kinetics and mechanism of the mitochondrial ADP-atp carrier
-
Barbour, R. L., and S. H. Chan. (1981) Characterization of the kinetics and mechanism of the mitochondrial ADP-atp carrier. Journal of Biological Chemistry 256:1940.
-
(1981)
Journal of Biological Chemistry
, vol.256
, pp. 1940
-
-
Barbour, R.L.1
Chan, S.H.2
-
246
-
-
0020093689
-
The role of the adenine nucleotide translocator in oxidative phosphorylation. A theoretical investigation on the basis of a comprehensive rate law of the translocator
-
Bohnensack, R. (1982) The role of the adenine nucleotide translocator in oxidative phosphorylation. A theoretical investigation on the basis of a comprehensive rate law of the translocator. Journal of Bioenergetics and Biomembranes 14:45.
-
(1982)
Journal of Bioenergetics and Biomembranes
, vol.14
, pp. 45
-
-
Bohnensack, R.1
-
247
-
-
0021771485
-
The influence of membrane potentials on reaction rates. Control in free-energy-transducing systems
-
Boork, J., and H. Wennestrom. (1984) The influence of membrane potentials on reaction rates. Control in free-energy-transducing systems. Biochimica et Biophysica Acta 767:314.
-
(1984)
Biochimica Et Biophysica Acta
, vol.767
, pp. 314
-
-
Boork, J.1
Wennestrom, H.2
-
248
-
-
0015882341
-
The mitochondrial generation of hydrogen peroxide. General properties and effect of hyperbaric oxygen
-
Boveris, A., and B. Chance. (1973) The mitochondrial generation of hydrogen peroxide. General properties and effect of hyperbaric oxygen. Biochemical Journal 134:707.
-
(1973)
Biochemical Journal
, vol.134
, pp. 707
-
-
Boveris, A.1
Chance, B.2
-
249
-
-
0019422501
-
Rapid reduction of cytochrome c1 in the presence of antimycin and its implication for the mechanism of electron transfer in the cytochrome b-c1 segment of the mitochondrial respiratory chain
-
Bowyer, J. R., and B. L. Trumpower. (1981) Rapid reduction of cytochrome c1 in the presence of antimycin and its implication for the mechanism of electron transfer in the cytochrome b-c1 segment of the mitochondrial respiratory chain. Journal of Biological Chemistry 256:2245.
-
(1981)
Journal of Biological Chemistry
, vol.256
, pp. 2245
-
-
Bowyer, J.R.1
Trumpower, B.L.2
-
250
-
-
0020477031
-
Exploration of the nucleotide binding sites of the isolated ADP/ATP carrier protein from beef heart mitochondria. 2. Probing of the nucleotide sites by formycin triphosphate, a fluorescent transportable analogue of ATP
-
Brandolin, G., Y. Dupont, and P. V. Vignais. (1982) Exploration of the nucleotide binding sites of the isolated ADP/ATP carrier protein from beef heart mitochondria. 2. Probing of the nucleotide sites by formycin triphosphate, a fluorescent transportable analogue of ATP. Biochemistry 21:6348.
-
(1982)
Biochemistry
, vol.21
, pp. 6348
-
-
Brandolin, G.1
Dupont, Y.2
Vignais, P.V.3
-
251
-
-
0022479238
-
Changes in permeability to protons and other cations at high proton motive force in rat liver mitochondria
-
Brown, G. C., and M. D. Brand. (1986) Changes in permeability to protons and other cations at high proton motive force in rat liver mitochondria. Biochemical Journal 234:75.
-
(1986)
Biochemical Journal
, vol.234
, pp. 75
-
-
Brown, G.C.1
Brand, M.D.2
-
253
-
-
0035497854
-
Kinetic modeling of energy metabolism and superoxide generation in hepatocyte mitochondria
-
Demin, O. V., et al. (2001) Kinetic modeling of energy metabolism and superoxide generation in hepatocyte mitochondria. Molecular Biology (Moscow) 35(6):1095.
-
(2001)
Molecular Biology (Moscow)
, vol.35
, Issue.6
, pp. 1095
-
-
Demin, O.V.1
-
255
-
-
0141479590
-
Mathematical modelling of superoxide generation with the bc1 complex of mitochondria
-
Demin, O. V., H. V. Westerhoff, and B. N. Kholodenko. (1998) Mathematical modelling of superoxide generation with the bc1 complex of mitochondria. Biochemistry (Moscow) 63(6):634.
-
(1998)
Biochemistry (Moscow)
, vol.63
, Issue.6
, pp. 634
-
-
Demin, O.V.1
Westerhoff, H.V.2
Kholodenko, B.N.3
-
256
-
-
85057233173
-
An investigation of the electrochemical cycle of bac-teriorhodopsin analogs with the modified ring
-
Drachev, L. A., et al. (1989) An investigation of the electrochemical cycle of bac-teriorhodopsin analogs with the modified ring. Biochimica et Biophysica Acta 973:189.
-
(1989)
Biochimica Et Biophysica Acta
, vol.973
, pp. 189
-
-
Drachev, L.A.1
-
257
-
-
0020477022
-
Exploration of the nucleotide binding sites of the isolated ADP/ATP carrier protein from beef heart mitochondria. 1. Probing of the nucleotide sites by Naphthoyl-ATP, a fluorescent nontransportable analogue of ATP
-
Dupont, Y., G. Brandolin, and P. V. Vignais. (1982) Exploration of the nucleotide binding sites of the isolated ADP/ATP carrier protein from beef heart mitochondria. 1. Probing of the nucleotide sites by Naphthoyl-ATP, a fluorescent nontransportable analogue of ATP. Biochemistry 21:6343.
-
(1982)
Biochemistry
, vol.21
, pp. 6343
-
-
Dupont, Y.1
Brandolin, G.2
Vignais, P.V.3
-
258
-
-
0019321887
-
On the mechanism of regulation of the mitochondrial K+/ H+ exchanger
-
Garlid, K. D. (1980) On the mechanism of regulation of the mitochondrial K+/ H+ exchanger. Journal of Biological Chemistry 225:11273.
-
(1980)
Journal of Biological Chemistry
, vol.225
, pp. 11273
-
-
Garlid, K.D.1
-
259
-
-
85057273602
-
Stoichiometry Of The Fixed Oxidation-reduction Components Of The Electron Transfer Chain Of Beef Heart Mitochondria
-
Green, D. E., and D. C. Wharton. (1963) Stoichiometry Of The Fixed Oxidation-reduction Components Of The Electron Transfer Chain Of Beef Heart Mitochondria. Biochemische. Zeitschrift. 336:335.
-
(1963)
Biochemische. Zeitschrift.
, vol.336
, pp. 335
-
-
Green, D.E.1
Wharton, D.C.2
-
260
-
-
0020484447
-
Kinetics of ubiquinone reduction by the resolved succinate: Ubiquinone reductase
-
Grivennikova, V. G., and A. D. Vinogradov. (1982) Kinetics of ubiquinone reduction by the resolved succinate: ubiquinone reductase. Biochimica et Biophysica Acta 682:491.
-
(1982)
Biochimica Et Biophysica Acta
, vol.682
, pp. 491
-
-
Grivennikova, V.G.1
Vinogradov, A.D.2
-
262
-
-
0015490615
-
Titration of mitochondrial buffer by accumulated anions
-
Harris, E. J., and J. A. Bangham. (1972) Titration of mitochondrial buffer by accumulated anions. Journal of Membrane Biology 9:141.
-
(1972)
Journal of Membrane Biology
, vol.9
, pp. 141
-
-
Harris, E.J.1
Bangham, J.A.2
-
265
-
-
0019879136
-
1H-NMR study of the location and motion of ubiquinones in perdeuterated phosphatidylcholine bilayers
-
Kingsley, P. B., and G. W. Feigenson. (1981) 1H-NMR study of the location and motion of ubiquinones in perdeuterated phosphatidylcholine bilayers. Biochimica et Biophysica Acta 635:602.
-
(1981)
Biochimica Et Biophysica Acta
, vol.635
, pp. 602
-
-
Kingsley, P.B.1
Feigenson, G.W.2
-
267
-
-
0030729851
-
High protonic potential actuates a mechanism of production of reactive oxygen species in mitochondria
-
Korshunov, S. S., V. P. Skulachev, and A. A. Starkov. (1997) High protonic potential actuates a mechanism of production of reactive oxygen species in mitochondria. FEBS Letters 416:15.
-
(1997)
FEBS Letters
, vol.416
, pp. 15
-
-
Korshunov, S.S.1
Skulachev, V.P.2
Starkov, A.A.3
-
268
-
-
0029655670
-
Simulation of state 4--= state 3 transition in isolated mitochondria
-
Korzeniewski, B. (1996) Simulation of state 4--= state 3 transition in isolated mitochondria. Biophysical Chemistry 57:143.
-
(1996)
Biophysical Chemistry
, vol.57
, Issue.143
-
-
Korzeniewski, B.1
-
269
-
-
0031703788
-
Is it possible to predict any properties of oxidative phosphorylation in a theoretical way?
-
Korzeniewski, B. (1998) Is it possible to predict any properties of oxidative phosphorylation in a theoretical way? Molecular and Cellular Biochemistry 184:345.
-
(1998)
Molecular and Cellular Biochemistry
, vol.184
, pp. 345
-
-
Korzeniewski, B.1
-
271
-
-
0021766207
-
Interaction of the membrane-bound succinate dehydrogenase with substrate and competitive inhibitors
-
Kotlyar, A. B., and A. D. Vinogradov. (1984) Interaction of the membrane-bound succinate dehydrogenase with substrate and competitive inhibitors. Biochimica et Biophysica Acta 784:24.
-
(1984)
Biochimica Et Biophysica Acta
, vol.784
, pp. 24
-
-
Kotlyar, A.B.1
Vinogradov, A.D.2
-
272
-
-
0020473267
-
Electrophoretic control of reconstituted adenine nucleotide translocation
-
Kramer, R., and M. Klingenberg. (1982) Electrophoretic control of reconstituted adenine nucleotide translocation. Biochemistry 21:1082.
-
(1982)
Biochemistry
, vol.21
, pp. 1082
-
-
Kramer, R.1
Klingenberg, M.2
-
273
-
-
0019578479
-
Relations between extramitochondrial and intramitochondrial adenine nucleotide systems
-
Kunz, W., R. Bohnensack, G. Bohme, U. Kuster, G. Letko, and P. Schonfeld. (1981) Relations between extramitochondrial and intramitochondrial adenine nucleotide systems. Archives of Biochemistry Biophysics 209:219.
-
(1981)
Archives of Biochemistry Biophysics
, vol.209
, pp. 219
-
-
Kunz, W.1
Bohnensack, R.2
Bohme, G.3
Kuster, U.4
Letko, G.5
Schonfeld, P.6
-
275
-
-
0018696222
-
Effects of pH and free Mg2+ on the Keq of the creatine kinase reaction and other phosphate hydrolyses and phosphate transfer reactions
-
Lawson, J. W. R., and R. L. Veech. (1979) Effects of pH and free Mg2+ on the Keq of the creatine kinase reaction and other phosphate hydrolyses and phosphate transfer reactions. Journal of Biological Chemistry 254:6528.
-
(1979)
Journal of Biological Chemistry
, vol.254
, pp. 6528
-
-
Lawson, J.W.R.1
Veech, R.L.2
-
276
-
-
0019161471
-
Investigation of the dependence of the intramitochondrial [ATP]/[ADP] ratio on the respiration rate
-
Letko, G., et al. (1980) Investigation of the dependence of the intramitochondrial [ATP]/[ADP] ratio on the respiration rate. Biochimica et Biophysica Acta 593:196.
-
(1980)
Biochimica Et Biophysica Acta
, vol.593
, pp. 196
-
-
Letko, G.1
-
277
-
-
0022434748
-
Kinetics of Pi-Pi exchange in rat liver mitochondria. Rapid filtration experiments in the millisecond time range
-
Ligeti, G., et al. (1985) Kinetics of Pi-Pi exchange in rat liver mitochondria. Rapid filtration experiments in the millisecond time range. Biochemistry 24:4423.
-
(1985)
Biochemistry
, vol.24
, pp. 4423
-
-
Ligeti, G.1
-
278
-
-
0030722043
-
Generating, partitioning, targeting and functioning of superoxide in mitochondria
-
Liu, S.-S. (1997) Generating, partitioning, targeting and functioning of superoxide in mitochondria. Bioscience Reports 17:259.
-
(1997)
Bioscience Reports
, vol.17
, pp. 259
-
-
Liu, S.-S.1
-
281
-
-
0021345488
-
Identification of an 82,000-dalton protein responsible for K+/H+ antiport in rat liver mitochondria
-
Martin, W. H., A. D. Beavis, and K. D. Garlid. (1984) Identification of an 82,000-dalton protein responsible for K+/H+ antiport in rat liver mitochondria. Journal of Biological Chemistry 259:2062.
-
(1984)
Journal of Biological Chemistry
, vol.259
, pp. 2062
-
-
Martin, W.H.1
Beavis, A.D.2
Garlid, K.D.3
-
284
-
-
0016294206
-
The influence of respiration and ATP hydrolysis on the proton-electrochemical gradient across the inner membrane of rat-liver mitochondria as determined by ion distribution
-
Nicholls, D. G. (1974) The influence of respiration and ATP hydrolysis on the proton-electrochemical gradient across the inner membrane of rat-liver mitochondria as determined by ion distribution. European Journal of Biochemistry 50:305.
-
(1974)
European Journal of Biochemistry
, vol.50
, pp. 305
-
-
Nicholls, D.G.1
-
285
-
-
0033537637
-
Proton and electron transfer during the reduction of molecular oxygen by fully reduced cytochrome c oxidase: A flow-flash investigation using optical multichannel detection
-
Paula, S., et al. (1999) Proton and electron transfer during the reduction of molecular oxygen by fully reduced cytochrome c oxidase: a flow-flash investigation using optical multichannel detection. Biochemistry 38:3025.
-
(1999)
Biochemistry
, vol.38
, pp. 3025
-
-
Paula, S.1
-
286
-
-
0020690487
-
On the relationship between Z delta pH and delta psi as components of the protonmotive potential in Mitchell’s chemiosmotic system
-
Reich, J. G., and K. Rohde. (1983) On the relationship between Z delta pH and delta psi as components of the protonmotive potential in Mitchell’s chemiosmotic system. Biomedica Biochimica Acta 42:37.
-
(1983)
Biomedica Biochimica Acta
, vol.42
, pp. 37
-
-
Reich, J.G.1
Rohde, K.2
-
288
-
-
0021758697
-
Electron and proton transfers through quinones and cytochrome bc complexes
-
Rich, P. R. (1984) Electron and proton transfers through quinones and cytochrome bc complexes. BBA 768:53.
-
(1984)
BBA
, vol.768
, pp. 53
-
-
Rich, P.R.1
-
289
-
-
0015523131
-
The value of G degrees for the hydrolysis of ATP
-
Rosing, J., and E. C. Slater. (1972) The value of G degrees for the hydrolysis of ATP. Biochimica et Biophysica Acta 267:275.
-
(1972)
Biochimica Et Biophysica Acta
, vol.267
, pp. 275
-
-
Rosing, J.1
Slater, E.C.2
-
291
-
-
0027412918
-
Electrogenic steps during electron transfer via the cytochrome bc1 complex of Rhodobacter sphaeroides chromatophores
-
Semenov, A. Y. (1993) Electrogenic steps during electron transfer via the cytochrome bc1 complex of Rhodobacter sphaeroides chromatophores. FEBS Letters 321:1.
-
(1993)
FEBS Letters
, vol.321
, Issue.1
-
-
Semenov, A.Y.1
-
293
-
-
0029765443
-
Role of uncoupled and non-coupled oxidations in maintenance of safely low levels of oxygen and its one-electron reductants
-
Skulachev, V. P. (1997) Role of uncoupled and non-coupled oxidations in maintenance of safely low levels of oxygen and its one-electron reductants. Quarterly Reviews of Biophysics 29:169.
-
(1997)
Quarterly Reviews of Biophysics
, vol.29
, pp. 169
-
-
Skulachev, V.P.1
-
295
-
-
85057229614
-
Macromolecular interactions: Tracing the roots
-
Srere, P. A. (1981) Macromolecular interactions: tracing the roots. Trends in Biochemical Sciences 6:4.
-
(1981)
Trends in Biochemical Sciences
, vol.6
, pp. 4
-
-
Srere, P.A.1
-
296
-
-
0019872792
-
Function of the iron-sulfur protein of the cytochrome b-c1 segment in electron-transfer and energy-conserving reactions of the mitochondrial respiratory chain
-
Trumpower, B. L. (1981) Function of the iron-sulfur protein of the cytochrome b-c1 segment in electron-transfer and energy-conserving reactions of the mitochondrial respiratory chain. BBA 639:129.
-
(1981)
BBA
, vol.639
, pp. 129
-
-
Trumpower, B.L.1
-
297
-
-
0029652024
-
Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 A
-
Tsukihara, T., et al. (1995) Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 A. Science 269:1069.
-
(1995)
Science
, vol.269
, pp. 1069
-
-
Tsukihara, T.1
-
298
-
-
0029942862
-
The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2
-
Tsukihara, T., et al. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A. Science 272:1136.
-
(1996)
8 A. Science
, vol.272
, pp. 1136
-
-
Tsukihara, T.1
-
299
-
-
0019319491
-
Relationship between chemiosomotic flows and thermodynamic forces in oxidative phosphorylation
-
Van Dam, K., et al. (1980) Relationship between chemiosomotic flows and thermodynamic forces in oxidative phosphorylation. Biochimica et Biophysica Acta 591:240.
-
(1980)
Biochimica Et Biophysica Acta
, vol.591
, pp. 240
-
-
van Dam, K.1
-
301
-
-
0024230755
-
Activation by reduction of the resting form of cytochrome c oxidase: Tests of different models and evidence for the involvement of CuB
-
Wrigglesworth, J. M., et al. (1988) Activation by reduction of the resting form of cytochrome c oxidase: tests of different models and evidence for the involvement of CuB. Biochimica et Biophysica Acta 936:452.
-
(1988)
Biochimica Et Biophysica Acta
, vol.936
, pp. 452
-
-
Wrigglesworth, J.M.1
-
302
-
-
18144447465
-
Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase
-
Yoshikawa, S., et al. (1998) Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase. Science 280:1723.
-
(1998)
Science
, vol.280
, pp. 1723
-
-
Yoshikawa, S.1
-
303
-
-
0344286166
-
Characterization of activity and expression of isocitrate lyase in Mycobacterium avium and Mycobacterium tuberculosis
-
Bentrup, K. H. Z., et al. (1999) Characterization of activity and expression of isocitrate lyase in Mycobacterium avium and Mycobacterium tuberculosis. Journal of Bacteriology 181:7161.
-
(1999)
Journal of Bacteriology
, vol.181
, pp. 7161
-
-
Bentrup, K.H.Z.1
-
304
-
-
0032476571
-
Nonsteroidal anti-inflammatory drug-associated toxicity of the liver, lower gastrointestinal tract, and esophagus
-
Bjorkman, D. (1998) Nonsteroidal anti-inflammatory drug-associated toxicity of the liver, lower gastrointestinal tract, and esophagus. American Journal of Medicine 105(5A):17S.
-
(1998)
American Journal of Medicine
, vol.105
, Issue.5A
, pp. 17S
-
-
Bjorkman, D.1
-
305
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole, S. T., et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393:537.
-
(1998)
Nature
, vol.393
, pp. 537
-
-
Cole, S.T.1
-
307
-
-
37949015401
-
Kinetic Modelling as a Modern Technology to Explore and Modify Living Cells. Modelling in molecular biology
-
edited by G. Ciobanu and G. Rozenberg. Springer, Berlin
-
Demin, O. V., et al. (2004) Kinetic Modelling as a Modern Technology to Explore and Modify Living Cells. Modelling in molecular biology. In Natural computing series, edited by G. Ciobanu and G. Rozenberg. Springer, Berlin.
-
(2004)
Natural Computing Series
-
-
Demin, O.V.1
-
309
-
-
0023411976
-
NADP-specific isocitrate dehydrogenase of Mycobacterium phlei ATCC 354: Purification and characterization
-
Dhariwal, K. R., and T. A. Venkitasubramanian. (1987) NADP-specific isocitrate dehydrogenase of Mycobacterium phlei ATCC 354: Purification and characterization. Journal of General Microbiology 133:2457.
-
(1987)
Journal of General Microbiology
, vol.133
, pp. 2457
-
-
Dhariwal, K.R.1
Venkitasubramanian, T.A.2
-
312
-
-
0029127584
-
Inhibition of mitochondrial beta-oxidation as a mechanism of hepatotoxicity
-
Fromenty, B., and D. Pessayre. (1995) Inhibition of mitochondrial beta-oxidation as a mechanism of hepatotoxicity. Pharmacological Therapeutics 67:101.
-
(1995)
Pharmacological Therapeutics
, vol.67
, pp. 101
-
-
Fromenty, B.1
Pessayre, D.2
-
313
-
-
77956169907
-
Applications of Whole Cell and Large Pathway Mathematical Models in the Pharmaceutical Industry
-
2003, edited by B. Kholodenko and H. Westerhoff. Horizon Bioscience, UK, Oxford
-
Goryanin, I. I., O. V. Demin, and F. Tobin. (2003) Applications of Whole Cell and Large Pathway Mathematical Models in the Pharmaceutical Industry. (2003) Metabolic engineering in the post genomic era, edited by B. Kholodenko and H. Westerhoff. Horizon Bioscience, UK, Oxford, p.103–129.
-
(2003)
Metabolic Engineering in the Post Genomic Era
, pp. 103-129
-
-
Goryanin, I.I.1
Demin, O.V.2
Tobin, F.3
-
314
-
-
0033613213
-
Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS)
-
Graham, J. E., and J. E. Clark-Curtiss. (1999) Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS). Proceedings of the National Academy of Sciences USA 96:11554.
-
(1999)
Proceedings of the National Academy of Sciences USA
, vol.96
, pp. 11554
-
-
Graham, J.E.1
Clark-Curtiss, J.E.2
-
315
-
-
0021952904
-
Salicylate-induced loose coupling: Protonmotive force measurements
-
Haas, R., et al. (1985) Salicylate-induced loose coupling: Protonmotive force measurements. Biochemical Pharmacology 34:900.
-
(1985)
Biochemical Pharmacology
, vol.34
, pp. 900
-
-
Haas, R.1
-
316
-
-
0343327859
-
Effects of salicylate and other ben-zoates on oxidative enzymes of the tricarboxylic acid cycle in rat tissue homogenates
-
Kaplan, E. H., J. Kennedy, and J. Davis. (1954) Effects of salicylate and other ben-zoates on oxidative enzymes of the tricarboxylic acid cycle in rat tissue homogenates. Archives of Biochemistry 51:47.
-
(1954)
Archives of Biochemistry
, vol.51
, pp. 47
-
-
Kaplan, E.H.1
Kennedy, J.2
Davis, J.3
-
317
-
-
0342794213
-
Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase
-
McKinney, J. D., et al. (2000) Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase. Nature 406:735.
-
(2000)
Nature
, vol.406
, pp. 735
-
-
McKinney, J.D.1
-
318
-
-
0000190795
-
Effect of salicylate on oxidative phosphorylation and respiration of mitochondrial fragments
-
Miyahara, J. T., and R. Karler. (1965) Effect of salicylate on oxidative phosphorylation and respiration of mitochondrial fragments. Biochemical Journal 97:194.
-
(1965)
Biochemical Journal
, vol.97
, pp. 194
-
-
Miyahara, J.T.1
Karler, R.2
-
319
-
-
34548864752
-
Kinetic model of mitochondrial Krebs cycle: Unraveling the mechanism of salicylate hepato-toxic effects
-
Mogilevskaya, E., O. Demin, and I. Goryanin. (2006) Kinetic model of mitochondrial Krebs cycle: Unraveling the mechanism of salicylate hepato-toxic effects. Journal of Biological Physics 32(3–4):245.
-
(2006)
Journal of Biological Physics
, vol.32
, Issue.3-4
, pp. 245
-
-
Mogilevskaya, E.1
Demin, O.2
Goryanin, I.3
-
320
-
-
0019765361
-
Regulation of volatile fatty acid uptake by mitochondrial acyl CoA synthetases of bovine liver
-
Ricks, C. A., and R. M. Cook. (1981) Regulation of volatile fatty acid uptake by mitochondrial acyl CoA synthetases of bovine liver. Journal of Dairy Science 64:2324.
-
(1981)
Journal of Dairy Science
, vol.64
, pp. 2324
-
-
Ricks, C.A.1
Cook, R.M.2
-
321
-
-
0033871202
-
Structure of isocitrate lyase, a persistence factor of Mycobacterium tuberculosis
-
Sharma, V., et al. (2000) Structure of isocitrate lyase, a persistence factor of Mycobacterium tuberculosis. Nature Structural & Molecular Biology 7:663.
-
(2000)
Nature Structural & Molecular Biology
, vol.7
, pp. 663
-
-
Sharma, V.1
-
323
-
-
0030338661
-
Interaction of salicylate and ibuprofen with the carboxylic acid: CoA ligases from bovine liver mitochondria
-
Vessey, D. A., J. Hu, and M. Kelly. (1996) Interaction of salicylate and ibuprofen with the carboxylic acid: CoA ligases from bovine liver mitochondria. Journal of Biochemical Toxicology 11:73.
-
(1996)
Journal of Biochemical Toxicology
, vol.11
, pp. 73
-
-
Vessey, D.A.1
Hu, J.2
Kelly, M.3
|