메뉴 건너뛰기




Volumn 88, Issue 1, 2005, Pages 37-49

Elucidation and structural analysis of conserved pools for genome-scale metabolic reconstructions

Author keywords

[No Author keywords available]

Indexed keywords

ACYL CARRIER PROTEIN; CARBON; COENZYME A; NITROGEN; PHOSPHATE; SULFUR;

EID: 11244341009     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.104.043489     Document Type: Article
Times cited : (33)

References (32)
  • 1
    • 1542288938 scopus 로고    scopus 로고
    • Global organization of metabolic fluxes in the bacterium Escherichia coli
    • Almaas, L., B. Kovacs, T. Vicsek, Z. N. Oltval, and A.-L. Barabasi. 2004. Global organization of metabolic fluxes in the bacterium Escherichia coli. Nature. 427:839-843.
    • (2004) Nature , vol.427 , pp. 839-843
    • Almaas, L.1    Kovacs, B.2    Vicsek, T.3    Oltval, Z.N.4    Barabasi, A.-L.5
  • 2
    • 1242319556 scopus 로고    scopus 로고
    • The metabolic world of Escherichia coli is not small
    • Arita, M. 2004. The metabolic world of Escherichia coli is not small. Proc. Natl. Acad. Sci. USA. 101:1543-1547.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 1543-1547
    • Arita, M.1
  • 3
    • 0014353859 scopus 로고
    • The energy charge of the adenylate pool as a regulatory parameter. Interactions with feedback modifiers
    • Atkinson, D. E. 1968. The energy charge of the adenylate pool as a regulatory parameter. Interactions with feedback modifiers. Biochemistry. 7:4030-4034.
    • (1968) Biochemistry , vol.7 , pp. 4030-4034
    • Atkinson, D.E.1
  • 5
  • 6
    • 1242274402 scopus 로고    scopus 로고
    • Flux coupling analysis of genome scale metabolic network reconstructions
    • Burgard, A. P., E. V. Nikolaev, C. H. Schilling, and C. D. Maranas. 2004. Flux coupling analysis of genome scale metabolic network reconstructions. Genome Res. 14:301-312.
    • (2004) Genome Res. , vol.14 , pp. 301-312
    • Burgard, A.P.1    Nikolaev, E.V.2    Schilling, C.H.3    Maranas, C.D.4
  • 7
    • 0242487787 scopus 로고    scopus 로고
    • OptKnock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
    • Burgard, A. P., P. Pharkya, and C. D. Maranas. 2003. OptKnock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol. Bioeng. 84:647-657.
    • (2003) Biotechnol. Bioeng. , vol.84 , pp. 647-657
    • Burgard, A.P.1    Pharkya, P.2    Maranas, C.D.3
  • 8
    • 0004075128 scopus 로고
    • Nauka, Moscow [in Russian]. (German translation. Lineare Ungleichungen. Deutscher Verlag der Wissenschaften, Berlin)
    • Chernikov, S. N. 1968. Linear Inequalities. Nauka, Moscow [in Russian]. (German translation. 1971. Lineare Ungleichungen. Deutscher Verlag der Wissenschaften, Berlin).
    • (1968) Linear Inequalities
    • Chernikov, S.N.1
  • 9
    • 0004139889 scopus 로고    scopus 로고
    • W. H. Freeman and Company, New York
    • Chvátal, V. 2000. Linear Programming. W. H. Freeman and Company, New York.
    • (2000) Linear Programming
    • Chvátal, V.1
  • 10
    • 0036304317 scopus 로고    scopus 로고
    • The role of stoichiometric analysis in studies of metabolism: An example
    • Cornish-Bowden, A., and J. H. Hofmeyr. 2002. The role of stoichiometric analysis in studies of metabolism: an example. J. Theor. Biol. 216:179-191.
    • (2002) J. Theor. Biol. , vol.216 , pp. 179-191
    • Cornish-Bowden, A.1    Hofmeyr, J.H.2
  • 11
    • 0034625143 scopus 로고    scopus 로고
    • The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
    • Edwards, J. S., and B. O. Palsson. 2000. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc. Natl. Acad. Sci. USA. 97:5528-5533.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5528-5533
    • Edwards, J.S.1    Palsson, B.O.2
  • 12
    • 0032489447 scopus 로고    scopus 로고
    • Prospects for antiparasitic drugs
    • Eisenthal, R., and A. Cornish-Bowden. 1998. Prospects for antiparasitic drugs. J. Biol. Chem. 273:5500-5505.
    • (1998) J. Biol. Chem. , vol.273 , pp. 5500-5505
    • Eisenthal, R.1    Cornish-Bowden, A.2
  • 13
    • 0038311902 scopus 로고    scopus 로고
    • The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools
    • Famili, I., and B. O. Palsson. 2003. The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools. Biophys. J. 85:16-26.
    • (2003) Biophys. J. , vol.85 , pp. 16-26
    • Famili, I.1    Palsson, B.O.2
  • 14
    • 0037313750 scopus 로고    scopus 로고
    • Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
    • Foster, J., I. Famili, P. C. Fu, B. O. Palsson, and J. Nielsen. 2003. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res. 13:244-253.
    • (2003) Genome Res. , vol.13 , pp. 244-253
    • Foster, J.1    Famili, I.2    Fu, P.C.3    Palsson, B.O.4    Nielsen, J.5
  • 18
    • 0032551598 scopus 로고    scopus 로고
    • Metabolic design: How to engineer a living cell to desired metabolite concentrations and fluxes
    • Kholodenko, B. N., M. Cascante, J. B. Hoek, H. V. Westerhoff, and J. Schwaber. 1998. Metabolic design: how to engineer a living cell to desired metabolite concentrations and fluxes. Biotechnol. Bioeng. 59: 239-247.
    • (1998) Biotechnol. Bioeng. , vol.59 , pp. 239-247
    • Kholodenko, B.N.1    Cascante, M.2    Hoek, J.B.3    Westerhoff, H.V.4    Schwaber, J.5
  • 19
    • 0027936677 scopus 로고
    • Control by enzymes, coenzymes and conserved moieties: A generalization of the connectivity theorem of metabolic control analysis
    • Kholodenko, B. N., H. M. Sauro, and H. V. Westerhoff. 1994. Control by enzymes, coenzymes and conserved moieties: a generalization of the connectivity theorem of metabolic control analysis. Eur. J. Biochem. 225: 179-186.
    • (1994) Eur. J. Biochem. , vol.225 , pp. 179-186
    • Kholodenko, B.N.1    Sauro, H.M.2    Westerhoff, H.V.3
  • 20
    • 0033943727 scopus 로고    scopus 로고
    • Engineering a living cell to desired metabolite concentrations and fluxes: Pathways with multifunctional enzymes
    • Kholodenko, B. N., H. V. Westerhoff, J. Schwaber, and M. Cascante. 2000. Engineering a living cell to desired metabolite concentrations and fluxes: pathways with multifunctional enzymes. Metab. Eng. 2:1-13.
    • (2000) Metab. Eng. , vol.2 , pp. 1-13
    • Kholodenko, B.N.1    Westerhoff, H.V.2    Schwaber, J.3    Cascante, M.4
  • 24
    • 0347762731 scopus 로고    scopus 로고
    • Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock
    • Pharkya, P., A. P. Burgard, and C. D. Maranas. 2003. Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock. Biotechnol. Bioeng. 84:887-899.
    • (2003) Biotechnol. Bioeng. , vol.84 , pp. 887-899
    • Pharkya, P.1    Burgard, A.P.2    Maranas, C.D.3
  • 25
    • 0023709196 scopus 로고
    • Metabolic control theory: A structural approach
    • Reder, C. 1988. Metabolic control theory: a structural approach. J. Theor. Biol. 135:175-201.
    • (1988) J. Theor. Biol. , vol.135 , pp. 175-201
    • Reder, C.1
  • 26
    • 0344328817 scopus 로고    scopus 로고
    • An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
    • Reed, J. L., T. D. Vo, C. H. Schilling, and B. O. Palsson. 2003. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 4:R54.
    • (2003) Genome Biol. , vol.4
    • Reed, J.L.1    Vo, T.D.2    Schilling, C.H.3    Palsson, B.O.4
  • 28
    • 0004267646 scopus 로고
    • Princeton University Press, Princeton, NJ
    • Rockafellar, R. T. 1970. Convex Analysis. Princeton University Press, Princeton, NJ.
    • (1970) Convex Analysis
    • Rockafellar, R.T.1
  • 30
    • 0009682315 scopus 로고
    • What information about the conserved-moiety structure of chemical reaction systems can be derived from their stoichiometry?
    • Schuster, S., and C. Hilgetag. 1995. What information about the conserved-moiety structure of chemical reaction systems can be derived from their stoichiometry? J. Phys. Chem. 99:8017-8023.
    • (1995) J. Phys. Chem. , vol.99 , pp. 8017-8023
    • Schuster, S.1    Hilgetag, C.2
  • 31
    • 0000068994 scopus 로고
    • Determining all extreme semi-positive conservation relations in chemical reaction systems: A test criterion for conservativity
    • Schuster, S., and T. Höfer. 1991. Determining all extreme semi-positive conservation relations in chemical reaction systems: a test criterion for conservativity. J. Chem. Soc. Faraday Trans. 87: 2561-2566.
    • (1991) J. Chem. Soc. Faraday Trans. , vol.87 , pp. 2561-2566
    • Schuster, S.1    Höfer, T.2
  • 32
    • 0029589663 scopus 로고
    • The inhibition of pyruvate transport across the plasma membrane of the bloodstream form of Trypanosoma brucei and its metabolic implications
    • Wiemer, E. A. C., P. A. M. Michels, and F. R. Opperdoes. 1995. The inhibition of pyruvate transport across the plasma membrane of the bloodstream form of Trypanosoma brucei and its metabolic implications. Biochem. J. 312:479-484.
    • (1995) Biochem. J. , vol.312 , pp. 479-484
    • Wiemer, E.A.C.1    Michels, P.A.M.2    Opperdoes, F.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.