-
1
-
-
84920770954
-
Inhibitors of CLK protein kinases suppress cell growth and induce apoptosis by modulating pre-mRNA splicing
-
Araki, S., Dairiki, R., Nakayama, Y., Murai, A., Miyashita, R., Iwatani, M., Nomura, T., Nakanishi, O., Inhibitors of CLK protein kinases suppress cell growth and induce apoptosis by modulating pre-mRNA splicing. PLoS One, 10, 2015, e0116929.
-
(2015)
PLoS One
, vol.10
, pp. e0116929
-
-
Araki, S.1
Dairiki, R.2
Nakayama, Y.3
Murai, A.4
Miyashita, R.5
Iwatani, M.6
Nomura, T.7
Nakanishi, O.8
-
2
-
-
85052155527
-
Proteomics, post-translational modifications, and integrative analyses reveal heterogeneity of molecular mechanisms within medulloblastoma subgroups
-
this issue
-
Archer, T.C., Ehrenberger, T., Mundt, F., Gold, M.P., Krug, K., Mah, C.K., Mahoney, E.L., Daniel, C.J., LeNail, A., Ramamoorthy, D., et al. Proteomics, post-translational modifications, and integrative analyses reveal heterogeneity of molecular mechanisms within medulloblastoma subgroups. Cancer Cell 34 (2018), 396–410 this issue.
-
(2018)
Cancer Cell
, vol.34
, pp. 396-410
-
-
Archer, T.C.1
Ehrenberger, T.2
Mundt, F.3
Gold, M.P.4
Krug, K.5
Mah, C.K.6
Mahoney, E.L.7
Daniel, C.J.8
LeNail, A.9
Ramamoorthy, D.10
-
3
-
-
84861801547
-
PhosphoSiteAnalyzer: a bioinformatic platform for deciphering phospho proteomes using kinase predictions retrieved from NetworKIN
-
Bennetzen, M.V., Cox, J., Mann, M., Andersen, J.S., PhosphoSiteAnalyzer: a bioinformatic platform for deciphering phospho proteomes using kinase predictions retrieved from NetworKIN. J. Proteome Res. 11 (2012), 3480–3486.
-
(2012)
J. Proteome Res.
, vol.11
, pp. 3480-3486
-
-
Bennetzen, M.V.1
Cox, J.2
Mann, M.3
Andersen, J.S.4
-
4
-
-
84890194631
-
Global screening of CK2 kinase substrates by an integrated phosphoproteomics workflow
-
Bian, Y., Ye, M., Wang, C., Cheng, K., Song, C., Dong, M., Pan, Y., Qin, H., Zou, H., Global screening of CK2 kinase substrates by an integrated phosphoproteomics workflow. Sci. Rep., 3, 2013, 3460.
-
(2013)
Sci. Rep.
, vol.3
, pp. 3460
-
-
Bian, Y.1
Ye, M.2
Wang, C.3
Cheng, K.4
Song, C.5
Dong, M.6
Pan, Y.7
Qin, H.8
Zou, H.9
-
5
-
-
85020687117
-
Intertumoral heterogeneity within medulloblastoma subgroups
-
Cavalli, F.M.G., Remke, M., Rampasek, L., Peacock, J., Shih, D.J.H., Luu, B., Garzia, L., Torchia, J., Nor, C., Morrissy, A.S., et al. Intertumoral heterogeneity within medulloblastoma subgroups. Cancer Cell 31 (2017), 737–754.e6.
-
(2017)
Cancer Cell
, vol.31
, pp. 737-754.e6
-
-
Cavalli, F.M.G.1
Remke, M.2
Rampasek, L.3
Peacock, J.4
Shih, D.J.H.5
Luu, B.6
Garzia, L.7
Torchia, J.8
Nor, C.9
Morrissy, A.S.10
-
6
-
-
79954991010
-
Integrative genomic analysis of medulloblastoma identifies a molecular subgroup that drives poor clinical outcome
-
Cho, Y.J., Tsherniak, A., Tamayo, P., Santagata, S., Ligon, A., Greulich, H., Berhoukim, R., Amani, V., Goumnerova, L., Eberhart, C.G., et al. Integrative genomic analysis of medulloblastoma identifies a molecular subgroup that drives poor clinical outcome. J. Clin. Oncol. 29 (2011), 1424–1430.
-
(2011)
J. Clin. Oncol.
, vol.29
, pp. 1424-1430
-
-
Cho, Y.J.1
Tsherniak, A.2
Tamayo, P.3
Santagata, S.4
Ligon, A.5
Greulich, H.6
Berhoukim, R.7
Amani, V.8
Goumnerova, L.9
Eberhart, C.G.10
-
7
-
-
84857518627
-
Biological sequence motif discovery using motif-x
-
Chou, M.F., Schwartz, D., Biological sequence motif discovery using motif-x. Curr. Protoc. Bioinformatics 13 (2011), 15–24.
-
(2011)
Curr. Protoc. Bioinformatics
, vol.13
, pp. 15-24
-
-
Chou, M.F.1
Schwartz, D.2
-
8
-
-
85044706739
-
Wnt/Wingless pathway activation and chromosome 6 loss characterize a distinct molecular sub-group of medulloblastomas associated with a favorable prognosis
-
Clifford, S.C., Lusher, M.E., Lindsey, J.C., Langdon, J.A., Gilbertson, R.J., Straughton, D., Ellison, D.W., Wnt/Wingless pathway activation and chromosome 6 loss characterize a distinct molecular sub-group of medulloblastomas associated with a favorable prognosis. Cell Cycle 5 (2006), 2666–2670.
-
(2006)
Cell Cycle
, vol.5
, pp. 2666-2670
-
-
Clifford, S.C.1
Lusher, M.E.2
Lindsey, J.C.3
Langdon, J.A.4
Gilbertson, R.J.5
Straughton, D.6
Ellison, D.W.7
-
9
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
Dobin, A., Davis, C.A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., Gingeras, T.R., STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29 (2013), 15–21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
10
-
-
68449101067
-
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
-
Durinck, S., Spellman, P.T., Birney, E., Huber, W., Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt. Nat. Protoc. 4 (2009), 1184–1191.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 1184-1191
-
-
Durinck, S.1
Spellman, P.T.2
Birney, E.3
Huber, W.4
-
11
-
-
84976870113
-
The reactome pathway knowledgebase
-
Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., et al. The reactome pathway knowledgebase. Nucleic Acids Res. 44 (2016), D481–D487.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D481-D487
-
-
Fabregat, A.1
Sidiropoulos, K.2
Garapati, P.3
Gillespie, M.4
Hausmann, K.5
Haw, R.6
Jassal, B.7
Jupe, S.8
Korninger, F.9
McKay, S.10
-
12
-
-
84959189722
-
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis
-
Fan, J., Salathia, N., Liu, R., Kaeser, G.E., Yung, Y.C., Herman, J.L., Kaper, F., Fan, J.B., Zhang, K., Chun, J., et al. Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis. Nat. Methods 13 (2016), 241–244.
-
(2016)
Nat. Methods
, vol.13
, pp. 241-244
-
-
Fan, J.1
Salathia, N.2
Liu, R.3
Kaeser, G.E.4
Yung, Y.C.5
Herman, J.L.6
Kaper, F.7
Fan, J.B.8
Zhang, K.9
Chun, J.10
-
13
-
-
77952226764
-
Super-SILAC mix for quantitative proteomics of human tumor tissue
-
Geiger, T., Cox, J., Ostasiewicz, P., Wisniewski, J.R., Mann, M., Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat. Methods 7 (2010), 383–385.
-
(2010)
Nat. Methods
, vol.7
, pp. 383-385
-
-
Geiger, T.1
Cox, J.2
Ostasiewicz, P.3
Wisniewski, J.R.4
Mann, M.5
-
14
-
-
79551663189
-
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
-
Geiger, T., Wisniewski, J.R., Cox, J., Zanivan, S., Kruger, M., Ishihama, Y., Mann, M., Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nat. Protoc. 6 (2011), 147–157.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 147-157
-
-
Geiger, T.1
Wisniewski, J.R.2
Cox, J.3
Zanivan, S.4
Kruger, M.5
Ishihama, Y.6
Mann, M.7
-
15
-
-
0032170045
-
Expression of the ErbB-neuregulin signaling network during human cerebellar development: implications for the biology of medulloblastoma
-
Gilbertson, R.J., Clifford, S.C., MacMeekin, W., Meekin, W., Wright, C., Perry, R.H., Kelly, P., Pearson, A.D., Lunec, J., Expression of the ErbB-neuregulin signaling network during human cerebellar development: implications for the biology of medulloblastoma. Cancer Res. 58 (1998), 3932–3941.
-
(1998)
Cancer Res.
, vol.58
, pp. 3932-3941
-
-
Gilbertson, R.J.1
Clifford, S.C.2
MacMeekin, W.3
Meekin, W.4
Wright, C.5
Perry, R.H.6
Kelly, P.7
Pearson, A.D.8
Lunec, J.9
-
16
-
-
0030741967
-
Prognostic significance of HER2 and HER4 coexpression in childhood medulloblastoma
-
Gilbertson, R.J., Perry, R.H., Kelly, P.J., Pearson, A.D., Lunec, J., Prognostic significance of HER2 and HER4 coexpression in childhood medulloblastoma. Cancer Res. 57 (1997), 3272–3280.
-
(1997)
Cancer Res.
, vol.57
, pp. 3272-3280
-
-
Gilbertson, R.J.1
Perry, R.H.2
Kelly, P.J.3
Pearson, A.D.4
Lunec, J.5
-
17
-
-
84896692613
-
Medulloblastoma down under 2013: a report from the third annual meeting of the International Medulloblastoma Working Group
-
Gottardo, N.G., Hansford, J.R., McGlade, J.P., Alvaro, F., Ashley, D.M., Bailey, S., Baker, D.L., Bourdeaut, F., Cho, Y.J., Clay, M., et al. Medulloblastoma down under 2013: a report from the third annual meeting of the International Medulloblastoma Working Group. Acta Neuropathol. 127 (2014), 189–201.
-
(2014)
Acta Neuropathol.
, vol.127
, pp. 189-201
-
-
Gottardo, N.G.1
Hansford, J.R.2
McGlade, J.P.3
Alvaro, F.4
Ashley, D.M.5
Bailey, S.6
Baker, D.L.7
Bourdeaut, F.8
Cho, Y.J.9
Clay, M.10
-
18
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
Greenbaum, D., Colangelo, C., Williams, K., Gerstein, M., Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol., 4, 2003, 117.
-
(2003)
Genome Biol.
, vol.4
, pp. 117
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
Gerstein, M.4
-
19
-
-
85002368664
-
Proteasome activator subunit 3 promotes pancreatic cancer growth via c-Myc-glycolysis signaling axis
-
Guo, J., Hao, J., Jiang, H., Jin, J., Wu, H., Jin, Z., Li, Z., Proteasome activator subunit 3 promotes pancreatic cancer growth via c-Myc-glycolysis signaling axis. Cancer Lett. 386 (2017), 161–167.
-
(2017)
Cancer Lett.
, vol.386
, pp. 161-167
-
-
Guo, J.1
Hao, J.2
Jiang, H.3
Jin, J.4
Wu, H.5
Jin, Z.6
Li, Z.7
-
20
-
-
84901788851
-
KinomeXplorer: an integrated platform for kinome biology studies
-
Horn, H., Schoof, E.M., Kim, J., Robin, X., Miller, M.L., Diella, F., Palma, A., Cesareni, G., Jensen, L.J., Linding, R., KinomeXplorer: an integrated platform for kinome biology studies. Nat. Methods 11 (2014), 603–604.
-
(2014)
Nat. Methods
, vol.11
, pp. 603-604
-
-
Horn, H.1
Schoof, E.M.2
Kim, J.3
Robin, X.4
Miller, M.L.5
Diella, F.6
Palma, A.7
Cesareni, G.8
Jensen, L.J.9
Linding, R.10
-
21
-
-
84903516439
-
Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing
-
Hovestadt, V., Jones, D.T., Picelli, S., Wang, W., Kool, M., Northcott, P.A., Sultan, M., Stachurski, K., Ryzhova, M., Warnatz, H.J., et al. Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing. Nature 510 (2014), 537–541.
-
(2014)
Nature
, vol.510
, pp. 537-541
-
-
Hovestadt, V.1
Jones, D.T.2
Picelli, S.3
Wang, W.4
Kool, M.5
Northcott, P.A.6
Sultan, M.7
Stachurski, K.8
Ryzhova, M.9
Warnatz, H.J.10
-
22
-
-
84878588603
-
Robust molecular subgrouping and copy-number profiling of medulloblastoma from small amounts of archival tumour material using high-density DNA methylation arrays
-
Hovestadt, V., Remke, M., Kool, M., Pietsch, T., Northcott, P.A., Fischer, R., Cavalli, F.M., Ramaswamy, V., Zapatka, M., Reifenberger, G., et al. Robust molecular subgrouping and copy-number profiling of medulloblastoma from small amounts of archival tumour material using high-density DNA methylation arrays. Acta Neuropathol. 125 (2013), 913–916.
-
(2013)
Acta Neuropathol.
, vol.125
, pp. 913-916
-
-
Hovestadt, V.1
Remke, M.2
Kool, M.3
Pietsch, T.4
Northcott, P.A.5
Fischer, R.6
Cavalli, F.M.7
Ramaswamy, V.8
Zapatka, M.9
Reifenberger, G.10
-
23
-
-
0032932248
-
Activating SRC mutation in a subset of advanced human colon cancers
-
Irby, R.B., Mao, W., Coppola, D., Kang, J., Loubeau, J.M., Trudeau, W., Karl, R., Fujita, D.J., Jove, R., Yeatman, T.J., Activating SRC mutation in a subset of advanced human colon cancers. Nat. Genet. 21 (1999), 187–190.
-
(1999)
Nat. Genet.
, vol.21
, pp. 187-190
-
-
Irby, R.B.1
Mao, W.2
Coppola, D.3
Kang, J.4
Loubeau, J.M.5
Trudeau, W.6
Karl, R.7
Fujita, D.J.8
Jove, R.9
Yeatman, T.J.10
-
24
-
-
4544235743
-
c-Src and cooperating partners in human cancer
-
Ishizawar, R., Parsons, S.J., c-Src and cooperating partners in human cancer. Cancer Cell 6 (2004), 209–214.
-
(2004)
Cancer Cell
, vol.6
, pp. 209-214
-
-
Ishizawar, R.1
Parsons, S.J.2
-
25
-
-
84960503418
-
The eukaryotic translation initiation factor 4E (eIF4E) as a therapeutic target for cancer
-
Karaki, S., Andrieu, C., Ziouziou, H., Rocchi, P., The eukaryotic translation initiation factor 4E (eIF4E) as a therapeutic target for cancer. Adv. Protein Chem. Struct. Biol. 101 (2015), 1–26.
-
(2015)
Adv. Protein Chem. Struct. Biol.
, vol.101
, pp. 1-26
-
-
Karaki, S.1
Andrieu, C.2
Ziouziou, H.3
Rocchi, P.4
-
26
-
-
85030479503
-
Novel MYC-driven medulloblastoma models from multiple embryonic cerebellar cells
-
Kawauchi, D., Ogg, R.J., Liu, L., Shih, D.J.H., Finkelstein, D., Murphy, B.L., Rehg, J.E., Korshunov, A., Calabrese, C., Zindy, F., et al. Novel MYC-driven medulloblastoma models from multiple embryonic cerebellar cells. Oncogene 36 (2017), 5231–5242.
-
(2017)
Oncogene
, vol.36
, pp. 5231-5242
-
-
Kawauchi, D.1
Ogg, R.J.2
Liu, L.3
Shih, D.J.H.4
Finkelstein, D.5
Murphy, B.L.6
Rehg, J.E.7
Korshunov, A.8
Calabrese, C.9
Zindy, F.10
-
27
-
-
84896096387
-
Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition
-
Kool, M., Jones, D.T., Jäger, N., Northcott, P.A., Pugh, T.J., Hovestadt, V., Piro, R.M., Esparza, L.A., Markant, S.L., Remke, M., et al. Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition. Cancer Cell 25 (2014), 393–405.
-
(2014)
Cancer Cell
, vol.25
, pp. 393-405
-
-
Kool, M.1
Jones, D.T.2
Jäger, N.3
Northcott, P.A.4
Pugh, T.J.5
Hovestadt, V.6
Piro, R.M.7
Esparza, L.A.8
Markant, S.L.9
Remke, M.10
-
28
-
-
84863393028
-
Molecular subgroups of medulloblastoma: an international meta-analysis of transcriptome, genetic aberrations, and clinical data of WNT, SHH, Group 3, and Group 4 medulloblastomas
-
Kool, M., Korshunov, A., Remke, M., Jones, D.T., Schlanstein, M., Northcott, P.A., Cho, Y.J., Koster, J., Schouten-van Meeteren, A., van Vuurden, D., et al. Molecular subgroups of medulloblastoma: an international meta-analysis of transcriptome, genetic aberrations, and clinical data of WNT, SHH, Group 3, and Group 4 medulloblastomas. Acta Neuropathol. 123 (2012), 473–484.
-
(2012)
Acta Neuropathol.
, vol.123
, pp. 473-484
-
-
Kool, M.1
Korshunov, A.2
Remke, M.3
Jones, D.T.4
Schlanstein, M.5
Northcott, P.A.6
Cho, Y.J.7
Koster, J.8
Schouten-van Meeteren, A.9
van Vuurden, D.10
-
29
-
-
52449119078
-
Integrated genomics identifies five medulloblastoma subtypes with distinct genetic profiles, pathway signatures and clinicopathological features
-
Kool, M., Koster, J., Bunt, J., Hasselt, N.E., Lakeman, A., van Sluis, P., Troost, D., Meeteren, N.S., Caron, H.N., Cloos, J., et al. Integrated genomics identifies five medulloblastoma subtypes with distinct genetic profiles, pathway signatures and clinicopathological features. PLoS One, 3, 2008, e3088.
-
(2008)
PLoS One
, vol.3
, pp. e3088
-
-
Kool, M.1
Koster, J.2
Bunt, J.3
Hasselt, N.E.4
Lakeman, A.5
van Sluis, P.6
Troost, D.7
Meeteren, N.S.8
Caron, H.N.9
Cloos, J.10
-
30
-
-
85019365826
-
Downregulation of β-arrestin 1 suppresses glioblastoma cell malignant progression vis inhibition of Src signaling
-
Lan, T., Wang, H., Zhang, Z., Zhang, M., Qu, Y., Zhao, Z., Fan, X., Zhan, Q., Song, Y., Yu, C., Downregulation of β-arrestin 1 suppresses glioblastoma cell malignant progression vis inhibition of Src signaling. Exp. Cell Res. 357 (2017), 51–58.
-
(2017)
Exp. Cell Res.
, vol.357
, pp. 51-58
-
-
Lan, T.1
Wang, H.2
Zhang, Z.3
Zhang, M.4
Qu, Y.5
Zhao, Z.6
Fan, X.7
Zhan, Q.8
Song, Y.9
Yu, C.10
-
31
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat. Methods 9 (2012), 357–359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
32
-
-
84859778293
-
MTOR signaling in growth control and disease
-
Laplante, M., Sabatini, D.M., MTOR signaling in growth control and disease. Cell 149 (2012), 274–293.
-
(2012)
Cell
, vol.149
, pp. 274-293
-
-
Laplante, M.1
Sabatini, D.M.2
-
33
-
-
78650845707
-
G protein-coupled receptors: novel targets for drug discovery in cancer
-
Lappano, R., Maggiolini, M., G protein-coupled receptors: novel targets for drug discovery in cancer. Nat. Rev. Drug Discov. 10 (2011), 47–60.
-
(2011)
Nat. Rev. Drug Discov.
, vol.10
, pp. 47-60
-
-
Lappano, R.1
Maggiolini, M.2
-
34
-
-
84859098571
-
The SVA package for removing batch effects and other unwanted variation in high-throughput experiments
-
Leek, J.T., Johnson, W.E., Parker, H.S., Jaffe, A.E., Storey, J.D., The SVA package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinformatics 28 (2012), 882–883.
-
(2012)
Bioinformatics
, vol.28
, pp. 882-883
-
-
Leek, J.T.1
Johnson, W.E.2
Parker, H.S.3
Jaffe, A.E.4
Storey, J.D.5
-
35
-
-
84955328286
-
The molecular signatures database (MSigDB) hallmark gene set collection
-
Liberzon, A., Birger, C., Thorvaldsdóttir, H., Ghandi, M., Mesirov, J.P., Tamayo, P., The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst. 1 (2015), 417–425.
-
(2015)
Cell Syst.
, vol.1
, pp. 417-425
-
-
Liberzon, A.1
Birger, C.2
Thorvaldsdóttir, H.3
Ghandi, M.4
Mesirov, J.P.5
Tamayo, P.6
-
36
-
-
84957573186
-
Active medulloblastoma enhancers reveal subgroup-specific cellular origins
-
Lin, C.Y., Erkek, S., Tong, Y., Yin, L., Federation, A.J., Zapatka, M., Haldipur, P., Kawauchi, D., Risch, T., Warnatz, H.J., Worst, B.C., Active medulloblastoma enhancers reveal subgroup-specific cellular origins. Nature 530 (2016), 57–62.
-
(2016)
Nature
, vol.530
, pp. 57-62
-
-
Lin, C.Y.1
Erkek, S.2
Tong, Y.3
Yin, L.4
Federation, A.J.5
Zapatka, M.6
Haldipur, P.7
Kawauchi, D.8
Risch, T.9
Warnatz, H.J.10
Worst, B.C.11
-
37
-
-
84966687479
-
The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary
-
Louis, D.N., Perry, A., Reifenberger, G., von Deimling, A., Figarella-Branger, D., Cavenee, W.K., Ohgaki, H., Wiestler, O.D., Kleihues, P., Ellison, D.W., The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary. Acta Neuropathol 131 (2016), 803–820.
-
(2016)
Acta Neuropathol
, vol.131
, pp. 803-820
-
-
Louis, D.N.1
Perry, A.2
Reifenberger, G.3
von Deimling, A.4
Figarella-Branger, D.5
Cavenee, W.K.6
Ohgaki, H.7
Wiestler, O.D.8
Kleihues, P.9
Ellison, D.W.10
-
38
-
-
84962592214
-
ROMA: representation and quantification of module activity from target expression data
-
Martignetti, L., Calzone, L., Bonnet, E., Barillot, E., Zinovyev, A., ROMA: representation and quantification of module activity from target expression data. Front. Genet., 7, 2016, 18.
-
(2016)
Front. Genet.
, vol.7
, pp. 18
-
-
Martignetti, L.1
Calzone, L.2
Bonnet, E.3
Barillot, E.4
Zinovyev, A.5
-
39
-
-
78649775562
-
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation
-
Merico, D., Isserlin, R., Stueker, O., Emili, A., Bader, G.D., Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLoS One, 5, 2010, e13984.
-
(2010)
PLoS One
, vol.5
, pp. e13984
-
-
Merico, D.1
Isserlin, R.2
Stueker, O.3
Emili, A.4
Bader, G.D.5
-
40
-
-
84973617999
-
Proteogenomics connects somatic mutations to signalling in breast cancer
-
Mertins, P., Mani, D.R., Ruggles, K.V., Gillette, M.A., Clauser, K.R., Wang, P., Wang, X., Qiao, J.W., Cao, S., Petralia, F., et al. Proteogenomics connects somatic mutations to signalling in breast cancer. Nature 534 (2016), 55–62.
-
(2016)
Nature
, vol.534
, pp. 55-62
-
-
Mertins, P.1
Mani, D.R.2
Ruggles, K.V.3
Gillette, M.A.4
Clauser, K.R.5
Wang, P.6
Wang, X.7
Qiao, J.W.8
Cao, S.9
Petralia, F.10
-
41
-
-
84871275799
-
HD-MB03 is a novel Group 3 medulloblastoma model demonstrating sensitivity to histone deacetylase inhibitor treatment
-
Milde, T., Lodrini, M., Savelyeva, L., Korshunov, A., Kool, M., Brueckner, L.M., Antunes, A.S., Oehme, I., Pekrun, A., Pfister, S.M., et al. HD-MB03 is a novel Group 3 medulloblastoma model demonstrating sensitivity to histone deacetylase inhibitor treatment. J. Neurooncol. 110 (2012), 335–348.
-
(2012)
J. Neurooncol.
, vol.110
, pp. 335-348
-
-
Milde, T.1
Lodrini, M.2
Savelyeva, L.3
Korshunov, A.4
Kool, M.5
Brueckner, L.M.6
Antunes, A.S.7
Oehme, I.8
Pekrun, A.9
Pfister, S.M.10
-
42
-
-
0038054341
-
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
Mootha, V.K., Lindgren, C.M., Eriksson, K.F., Subramanian, A., Sihag, S., Lehar, J., Puigserver, P., Carlsson, E., Ridderstråle, M., Laurila, E., et al. PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat. Genet. 34 (2003), 267–273.
-
(2003)
Nat. Genet.
, vol.34
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Lehar, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstråle, M.9
Laurila, E.10
-
43
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj, N., Wisniewski, J.R., Geiger, T., Cox, J., Kircher, M., Kelso, J., Pääbo, S., Mann, M., Deep proteome and transcriptome mapping of a human cancer cell line. Mol. Syst. Biol., 7, 2011, 548.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
Kelso, J.6
Pääbo, S.7
Mann, M.8
-
44
-
-
85025159196
-
The whole-genome landscape of medulloblastoma subtypes
-
Northcott, P.A., Buchhalter, I., Morrissy, A.S., Hovestadt, V., Weischenfeldt, J., Ehrenberger, T., Gröbner, S., Segura-Wang, M., Zichner, T., Rudneva, V.A., et al. The whole-genome landscape of medulloblastoma subtypes. Nature 547 (2017), 311–317.
-
(2017)
Nature
, vol.547
, pp. 311-317
-
-
Northcott, P.A.1
Buchhalter, I.2
Morrissy, A.S.3
Hovestadt, V.4
Weischenfeldt, J.5
Ehrenberger, T.6
Gröbner, S.7
Segura-Wang, M.8
Zichner, T.9
Rudneva, V.A.10
-
45
-
-
79955034739
-
Medulloblastoma comprises four distinct molecular variants
-
Northcott, P.A., Korshunov, A., Witt, H., Hielscher, T., Eberhart, C.G., Mack, S., Bouffet, E., Clifford, S.C., Hawkins, C.E., French, P., et al. Medulloblastoma comprises four distinct molecular variants. J. Clin. Oncol. 29 (2011), 1408–1414.
-
(2011)
J. Clin. Oncol.
, vol.29
, pp. 1408-1414
-
-
Northcott, P.A.1
Korshunov, A.2
Witt, H.3
Hielscher, T.4
Eberhart, C.G.5
Mack, S.6
Bouffet, E.7
Clifford, S.C.8
Hawkins, C.E.9
French, P.10
-
46
-
-
84904816744
-
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
-
Northcott, P.A., Lee, C., Zichner, T., Stütz, A.M., Erkek, S., Kawauchi, D., Shih, D.J., Hovestadt, V., Zapatka, M., Sturm, D., et al. Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma. Nature 511 (2014), 428–434.
-
(2014)
Nature
, vol.511
, pp. 428-434
-
-
Northcott, P.A.1
Lee, C.2
Zichner, T.3
Stütz, A.M.4
Erkek, S.5
Kawauchi, D.6
Shih, D.J.7
Hovestadt, V.8
Zapatka, M.9
Sturm, D.10
-
47
-
-
84862680481
-
Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples
-
Northcott, P.A., Shih, D.J., Remke, M., Cho, Y.J., Kool, M., Hawkins, C., Eberhart, C.G., Dubuc, A., Guettouche, T., Cardentey, Y., et al. Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples. Acta Neuropathol. 123 (2012), 615–626.
-
(2012)
Acta Neuropathol.
, vol.123
, pp. 615-626
-
-
Northcott, P.A.1
Shih, D.J.2
Remke, M.3
Cho, Y.J.4
Kool, M.5
Hawkins, C.6
Eberhart, C.G.7
Dubuc, A.8
Guettouche, T.9
Cardentey, Y.10
-
48
-
-
12344333887
-
PKA phosphorylation of Src mediates Rap1 activation in NGF and cAMP signaling in PC12 cells
-
Obara, Y., Labudda, K., Dillon, T.J., Stork, P.J., PKA phosphorylation of Src mediates Rap1 activation in NGF and cAMP signaling in PC12 cells. J. Cell Sci. 117 (2004), 6085–6094.
-
(2004)
J. Cell Sci.
, vol.117
, pp. 6085-6094
-
-
Obara, Y.1
Labudda, K.2
Dillon, T.J.3
Stork, P.J.4
-
49
-
-
84863012675
-
An animal model of MYC-driven medulloblastoma
-
Pei, Y., Moore, C.E., Wang, J., Tewari, A.K., Eroshkin, A., Cho, Y.J., Witt, H., Korshunov, A., Read, T.A., Sun, J.L., et al. An animal model of MYC-driven medulloblastoma. Cancer Cell 21 (2012), 155–167.
-
(2012)
Cancer Cell
, vol.21
, pp. 155-167
-
-
Pei, Y.1
Moore, C.E.2
Wang, J.3
Tewari, A.K.4
Eroshkin, A.5
Cho, Y.J.6
Witt, H.7
Korshunov, A.8
Read, T.A.9
Sun, J.L.10
-
50
-
-
63749118521
-
Outcome prediction in pediatric medulloblastoma based on DNA copy-number aberrations of chromosomes 6q and 17q and the MYC and MYCN loci
-
Pfister, S., Remke, M., Benner, A., Mendrzyk, F., Toedt, G., Felsberg, J., Wittmann, A., Devens, F., Gerber, N.U., Joos, S., et al. Outcome prediction in pediatric medulloblastoma based on DNA copy-number aberrations of chromosomes 6q and 17q and the MYC and MYCN loci. J. Clin. Oncol. 27 (2009), 1627–1636.
-
(2009)
J. Clin. Oncol.
, vol.27
, pp. 1627-1636
-
-
Pfister, S.1
Remke, M.2
Benner, A.3
Mendrzyk, F.4
Toedt, G.5
Felsberg, J.6
Wittmann, A.7
Devens, F.8
Gerber, N.U.9
Joos, S.10
-
51
-
-
34547907397
-
myProMS, a web server for management and validation of mass spectrometry-based proteomic data
-
Poullet, P., Carpentier, S., Barillot, E., myProMS, a web server for management and validation of mass spectrometry-based proteomic data. Proteomics 7 (2007), 2553–2556.
-
(2007)
Proteomics
, vol.7
, pp. 2553-2556
-
-
Poullet, P.1
Carpentier, S.2
Barillot, E.3
-
52
-
-
84962148685
-
Risk stratification of childhood medulloblastoma in the molecular era: the current consensus
-
Ramaswamy, V., Remke, M., Bouffet, E., Bailey, S., Clifford, S.C., Doz, F., Kool, M., Dufour, C., Vassal, G., Milde, T., et al. Risk stratification of childhood medulloblastoma in the molecular era: the current consensus. Acta Neuropathol. 131 (2016), 821–831.
-
(2016)
Acta Neuropathol.
, vol.131
, pp. 821-831
-
-
Ramaswamy, V.1
Remke, M.2
Bouffet, E.3
Bailey, S.4
Clifford, S.C.5
Doz, F.6
Kool, M.7
Dufour, C.8
Vassal, G.9
Milde, T.10
-
53
-
-
80053980912
-
FSTL5 is a marker of poor prognosis in non-WNT/non-SHH medulloblastoma
-
Remke, M., Hielscher, T., Korshunov, A., Northcott, P.A., Bender, S., Kool, M., Westermann, F., Benner, A., Cin, H., Ryzhova, M., et al. FSTL5 is a marker of poor prognosis in non-WNT/non-SHH medulloblastoma. J. Clin. Oncol. 29 (2011), 3852–3861.
-
(2011)
J. Clin. Oncol.
, vol.29
, pp. 3852-3861
-
-
Remke, M.1
Hielscher, T.2
Korshunov, A.3
Northcott, P.A.4
Bender, S.5
Kool, M.6
Westermann, F.7
Benner, A.8
Cin, H.9
Ryzhova, M.10
-
54
-
-
79960119129
-
Adult medulloblastoma comprises three major molecular variants
-
Remke, M., Hielscher, T., Northcott, P.A., Witt, H., Ryzhova, M., Wittmann, A., Benner, A., von Deimling, A., Scheurlen, W., Perry, A., et al. Adult medulloblastoma comprises three major molecular variants. J. Clin. Oncol. 29 (2011), 2717–2723.
-
(2011)
J. Clin. Oncol.
, vol.29
, pp. 2717-2723
-
-
Remke, M.1
Hielscher, T.2
Northcott, P.A.3
Witt, H.4
Ryzhova, M.5
Wittmann, A.6
Benner, A.7
von Deimling, A.8
Scheurlen, W.9
Perry, A.10
-
55
-
-
84926507971
-
Limma powers differential expression analyses for RNA-sequencing and microarray studies
-
Ritchie, M.E., Phipson, B., Wu, D., Hu, Y., Law, C.W., Shi, W., Smyth, G.K., Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res., 43, 2015, e47.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. e47
-
-
Ritchie, M.E.1
Phipson, B.2
Wu, D.3
Hu, Y.4
Law, C.W.5
Shi, W.6
Smyth, G.K.7
-
56
-
-
84864444165
-
Novel mutations target distinct subgroups of medulloblastoma
-
Robinson, G., Parker, M., Kranenburg, T.A., Lu, C., Chen, X., Ding, L., Phoenix, T.N., Hedlund, E., Wei, L., Zhu, X., et al. Novel mutations target distinct subgroups of medulloblastoma. Nature 488 (2012), 43–48.
-
(2012)
Nature
, vol.488
, pp. 43-48
-
-
Robinson, G.1
Parker, M.2
Kranenburg, T.A.3
Lu, C.4
Chen, X.5
Ding, L.6
Phoenix, T.N.7
Hedlund, E.8
Wei, L.9
Zhu, X.10
-
57
-
-
34247588196
-
Stable integration and conditional expression of electroporated transgenes in chicken embryos
-
Sato, Y., Kasai, T., Nakagawa, S., Tanabe, K., Watanabe, T., Kawakami, K., Takahashi, Y., Stable integration and conditional expression of electroporated transgenes in chicken embryos. Dev. Biol. 305 (2007), 616–624.
-
(2007)
Dev. Biol.
, vol.305
, pp. 616-624
-
-
Sato, Y.1
Kasai, T.2
Nakagawa, S.3
Tanabe, K.4
Watanabe, T.5
Kawakami, K.6
Takahashi, Y.7
-
58
-
-
58149186477
-
PID: the pathway interaction database
-
Schaefer, C.F., Anthony, K., Krupa, S., Buchoff, J., Day, M., Hannay, T., Buetow, K.H., PID: the pathway interaction database. Nucleic Acids Res. 37 (2009), D674–D679.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D674-D679
-
-
Schaefer, C.F.1
Anthony, K.2
Krupa, S.3
Buchoff, J.4
Day, M.5
Hannay, T.6
Buetow, K.H.7
-
59
-
-
85019610513
-
Novel molecular subgroups for clinical classification and outcome prediction in childhood medulloblastoma: a cohort study
-
Schwalbe, E.C., Lindsey, J.C., Nakjang, S., Crosier, S., Smith, A.J., Hicks, D., Rafiee, G., Hill, R.M., Iliasova, A., Stone, T., et al. Novel molecular subgroups for clinical classification and outcome prediction in childhood medulloblastoma: a cohort study. Lancet Oncol. 18 (2017), 958–971.
-
(2017)
Lancet Oncol.
, vol.18
, pp. 958-971
-
-
Schwalbe, E.C.1
Lindsey, J.C.2
Nakjang, S.3
Crosier, S.4
Smith, A.J.5
Hicks, D.6
Rafiee, G.7
Hill, R.M.8
Iliasova, A.9
Stone, T.10
-
60
-
-
84878874877
-
DNA methylation profiling of medulloblastoma allows robust subclassification and improved outcome prediction using formalin-fixed biopsies
-
Schwalbe, E.C., Williamson, D., Lindsey, J.C., Hamilton, D., Ryan, S.L., Megahed, H., Garami, M., Hauser, P., Dembowska-Baginska, B., Perek, D., et al. DNA methylation profiling of medulloblastoma allows robust subclassification and improved outcome prediction using formalin-fixed biopsies. Acta Neuropathol. 125 (2013), 359–371.
-
(2013)
Acta Neuropathol.
, vol.125
, pp. 359-371
-
-
Schwalbe, E.C.1
Williamson, D.2
Lindsey, J.C.3
Hamilton, D.4
Ryan, S.L.5
Megahed, H.6
Garami, M.7
Hauser, P.8
Dembowska-Baginska, B.9
Perek, D.10
-
61
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., Selbach, M., Global quantification of mammalian gene expression control. Nature 473 (2011), 337–342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
62
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B., Ideker, T., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13 (2003), 2498–2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
63
-
-
84899684426
-
Cytogenetic prognostication within medulloblastoma subgroups
-
Shih, D.J., Northcott, P.A., Remke, M., Korshunov, A., Ramaswamy, V., Kool, M., Luu, B., Yao, Y., Wang, X., Dubuc, A.M., et al. Cytogenetic prognostication within medulloblastoma subgroups. J. Clin. Oncol. 32 (2014), 886–896.
-
(2014)
J. Clin. Oncol.
, vol.32
, pp. 886-896
-
-
Shih, D.J.1
Northcott, P.A.2
Remke, M.3
Korshunov, A.4
Ramaswamy, V.5
Kool, M.6
Luu, B.7
Yao, Y.8
Wang, X.9
Dubuc, A.M.10
-
64
-
-
80052359992
-
Emerging paradigms of β-arrestin-dependent seven transmembrane receptor signaling
-
Shukla, A.K., Xiao, K., Lefkowitz, R.J., Emerging paradigms of β-arrestin-dependent seven transmembrane receptor signaling. Trends Biochem. Sci. 36 (2011), 457–469.
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 457-469
-
-
Shukla, A.K.1
Xiao, K.2
Lefkowitz, R.J.3
-
65
-
-
84959433571
-
New brain tumor entities emerge from molecular classification of CNS-PNETs
-
Sturm, D., Orr, B.A., Toprak, U.H., Hovestadt, V., Jones, D.T.W., Capper, D., Sill, M., Buchhalter, I., Northcott, P.A., Leis, I., et al. New brain tumor entities emerge from molecular classification of CNS-PNETs. Cell 164 (2016), 1060–1072.
-
(2016)
Cell
, vol.164
, pp. 1060-1072
-
-
Sturm, D.1
Orr, B.A.2
Toprak, U.H.3
Hovestadt, V.4
Jones, D.T.W.5
Capper, D.6
Sill, M.7
Buchhalter, I.8
Northcott, P.A.9
Leis, I.10
-
66
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S., et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102 (2005), 15545–15550.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
67
-
-
0034111414
-
Mutation of the SRC gene in endometrial carcinoma
-
Sugimura, M., Kobayashi, K., Sagae, S., Nishioka, Y., Ishioka, S., Terasawa, K., Tokino, T., Kudo, R., Mutation of the SRC gene in endometrial carcinoma. Jpn. J. Cancer Res. 91 (2000), 395–398.
-
(2000)
Jpn. J. Cancer Res.
, vol.91
, pp. 395-398
-
-
Sugimura, M.1
Kobayashi, K.2
Sagae, S.3
Nishioka, Y.4
Ishioka, S.5
Terasawa, K.6
Tokino, T.7
Kudo, R.8
-
68
-
-
85021857514
-
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible
-
D362–DD368
-
Szklarczyk, D., Morris, J.H., Cook, H., Kuhn, M., Wyder, S., Simonovic, M., Santos, A., Doncheva, N.T., Roth, A., Bork, P., et al. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res., 45, 2017 D362–DD368.
-
(2017)
Nucleic Acids Res.
, vol.45
-
-
Szklarczyk, D.1
Morris, J.H.2
Cook, H.3
Kuhn, M.4
Wyder, S.5
Simonovic, M.6
Santos, A.7
Doncheva, N.T.8
Roth, A.9
Bork, P.10
-
69
-
-
82755182013
-
Universal and confident phosphorylation site localization using phosphoRS
-
Taus, T., Köcher, T., Pichler, P., Paschke, C., Schmidt, A., Henrich, C., Mechtler, K., Universal and confident phosphorylation site localization using phosphoRS. J. Proteome Res. 10 (2011), 5354–5362.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 5354-5362
-
-
Taus, T.1
Köcher, T.2
Pichler, P.3
Paschke, C.4
Schmidt, A.5
Henrich, C.6
Mechtler, K.7
-
70
-
-
84860821444
-
Molecular subgroups of medulloblastoma: the current consensus
-
Taylor, M.D., Northcott, P.A., Korshunov, A., Remke, M., Cho, Y.J., Clifford, S.C., Eberhart, C.G., Parsons, D.W., Rutkowski, S., Gajjar, A., et al. Molecular subgroups of medulloblastoma: the current consensus. Acta Neuropathol. 123 (2012), 465–472.
-
(2012)
Acta Neuropathol.
, vol.123
, pp. 465-472
-
-
Taylor, M.D.1
Northcott, P.A.2
Korshunov, A.3
Remke, M.4
Cho, Y.J.5
Clifford, S.C.6
Eberhart, C.G.7
Parsons, D.W.8
Rutkowski, S.9
Gajjar, A.10
-
71
-
-
33646362581
-
Genomics identifies medulloblastoma subgroups that are enriched for specific genetic alterations
-
Thompson, M.C., Fuller, C., Hogg, T.L., Dalton, J., Finkelstein, D., Lau, C.C., Chintagumpala, M., Adesina, A., Ashley, D.M., Kellie, S.J., et al. Genomics identifies medulloblastoma subgroups that are enriched for specific genetic alterations. J. Clin. Oncol. 24 (2006), 1924–1931.
-
(2006)
J. Clin. Oncol.
, vol.24
, pp. 1924-1931
-
-
Thompson, M.C.1
Fuller, C.2
Hogg, T.L.3
Dalton, J.4
Finkelstein, D.5
Lau, C.C.6
Chintagumpala, M.7
Adesina, A.8
Ashley, D.M.9
Kellie, S.J.10
-
72
-
-
85014970557
-
The molecular basis of mTORC1-regulated translation
-
Thoreen, C.C., The molecular basis of mTORC1-regulated translation. Biochem. Soc. Trans. 45 (2017), 213–221.
-
(2017)
Biochem. Soc. Trans.
, vol.45
, pp. 213-221
-
-
Thoreen, C.C.1
-
73
-
-
85029597182
-
New frontiers in translational control of the cancer genome
-
Truitt, M.L., Ruggero, D., New frontiers in translational control of the cancer genome. Nat. Rev. Cancer, 17, 2017, 332.
-
(2017)
Nat. Rev. Cancer
, vol.17
, pp. 332
-
-
Truitt, M.L.1
Ruggero, D.2
-
74
-
-
84976871411
-
2016 update of the PRIDE database and its related tools
-
Vizcaino, J.A., Csordas, A., Del-Toro, N., Dianes, J.A., Griss, J., Lavidas, I., Mayer, G., Perez-Riverol, Y., Reisinger, F., Ternent, T., et al. 2016 update of the PRIDE database and its related tools. Nucleic Acids Res., 44, 2016, 11033.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 11033
-
-
Vizcaino, J.A.1
Csordas, A.2
Del-Toro, N.3
Dianes, J.A.4
Griss, J.5
Lavidas, I.6
Mayer, G.7
Perez-Riverol, Y.8
Reisinger, F.9
Ternent, T.10
-
75
-
-
84866665390
-
Mitochondria and cancer
-
Wallace, D.C., Mitochondria and cancer. Nat. Rev. Cancer 12 (2012), 685–698.
-
(2012)
Nat. Rev. Cancer
, vol.12
, pp. 685-698
-
-
Wallace, D.C.1
-
76
-
-
84895516704
-
Similarity network fusion for aggregating data types on a genomic scale
-
Wang, B., Mezlini, A.M., Demir, F., Fiume, M., Tu, Z., Brudno, M., Haibe-Kains, B., Goldenberg, A., Similarity network fusion for aggregating data types on a genomic scale. Nat. Methods 11 (2014), 333–337.
-
(2014)
Nat. Methods
, vol.11
, pp. 333-337
-
-
Wang, B.1
Mezlini, A.M.2
Demir, F.3
Fiume, M.4
Tu, Z.5
Brudno, M.6
Haibe-Kains, B.7
Goldenberg, A.8
-
77
-
-
84954225334
-
Transactivation of epidermal growth factor receptor by G protein-coupled receptors: recent progress, challenges and future research
-
Wang, Z., Transactivation of epidermal growth factor receptor by G protein-coupled receptors: recent progress, challenges and future research. Int. J. Mol. Sci., 17, 2016, 95.
-
(2016)
Int. J. Mol. Sci.
, vol.17
, pp. 95
-
-
Wang, Z.1
-
78
-
-
84901647519
-
Subgroup-specific localization of human medulloblastoma based on pre-operative MRI
-
Wefers, A.K., Warmuth-Metz, M., Pöschl, J., von Bueren, A.O., Monoranu, C.M., Seelos, K., Peraud, A., Tonn, J.C., Koch, A., Pietsch, T., et al. Subgroup-specific localization of human medulloblastoma based on pre-operative MRI. Acta Neuropathol. 127 (2014), 931–933.
-
(2014)
Acta Neuropathol.
, vol.127
, pp. 931-933
-
-
Wefers, A.K.1
Warmuth-Metz, M.2
Pöschl, J.3
von Bueren, A.O.4
Monoranu, C.M.5
Seelos, K.6
Peraud, A.7
Tonn, J.C.8
Koch, A.9
Pietsch, T.10
-
80
-
-
0032828077
-
The proteasome inhibitor PI31 competes with PA28 for binding to 20S proteasomes
-
Zaiss, D.M., Standera, S., Holzhütter, H., Kloetzel, P., Sijts, A.J., The proteasome inhibitor PI31 competes with PA28 for binding to 20S proteasomes. FEBS Lett. 457 (1999), 333–338.
-
(1999)
FEBS Lett.
, vol.457
, pp. 333-338
-
-
Zaiss, D.M.1
Standera, S.2
Holzhütter, H.3
Kloetzel, P.4
Sijts, A.J.5
-
81
-
-
84907269780
-
Proteogenomic characterization of human colon and rectal cancer
-
Zhang, B., Wang, J., Wang, X., Zhu, J., Liu, Q., Shi, Z., Chambers, M.C., Zimmerman, L.J., Shaddox, K.F., Kim, S., et al. Proteogenomic characterization of human colon and rectal cancer. Nature 513 (2014), 382–387.
-
(2014)
Nature
, vol.513
, pp. 382-387
-
-
Zhang, B.1
Wang, J.2
Wang, X.3
Zhu, J.4
Liu, Q.5
Shi, Z.6
Chambers, M.C.7
Zimmerman, L.J.8
Shaddox, K.F.9
Kim, S.10
-
82
-
-
84977611330
-
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
-
Zhang, H., Liu, T., Zhang, Z., Payne, S.H., Zhang, B., McDermott, J.E., Zhou, J.Y., Petyuk, V.A., Chen, L., Ray, D., et al. Integrated proteogenomic characterization of human high-grade serous ovarian cancer. Cell 166 (2016), 755–765.
-
(2016)
Cell
, vol.166
, pp. 755-765
-
-
Zhang, H.1
Liu, T.2
Zhang, Z.3
Payne, S.H.4
Zhang, B.5
McDermott, J.E.6
Zhou, J.Y.7
Petyuk, V.A.8
Chen, L.9
Ray, D.10
-
83
-
-
10744223870
-
Shp2 regulates SRC family kinase activity and Ras/Erk activation by controlling Csk recruitment
-
Zhang, S.Q., Yang, W., Kontaridis, M.I., Bivona, T.G., Wen, G., Araki, T., Luo, J., Thompson, J.A., Schraven, B.L., Philips, M.R., et al. Shp2 regulates SRC family kinase activity and Ras/Erk activation by controlling Csk recruitment. Mol. Cell 13 (2004), 341–355.
-
(2004)
Mol. Cell
, vol.13
, pp. 341-355
-
-
Zhang, S.Q.1
Yang, W.2
Kontaridis, M.I.3
Bivona, T.G.4
Wen, G.5
Araki, T.6
Luo, J.7
Thompson, J.A.8
Schraven, B.L.9
Philips, M.R.10
-
84
-
-
85044111819
-
Identification of two protein-signaling states delineating transcriptionally heterogeneous human medulloblastoma
-
Zomerman, W.W., Plasschaert, S.L.A., Conroy, S., Scherpen, F.J., Meeuwsen-de Boer, T.G.J., Lourens, H.J., Guerrero Llobet, S., Smit, M.J., Slagter-Menkema, L., Seitz, A., et al. Identification of two protein-signaling states delineating transcriptionally heterogeneous human medulloblastoma. Cell Rep. 22 (2018), 3206–3216.
-
(2018)
Cell Rep.
, vol.22
, pp. 3206-3216
-
-
Zomerman, W.W.1
Plasschaert, S.L.A.2
Conroy, S.3
Scherpen, F.J.4
Meeuwsen-de Boer, T.G.J.5
Lourens, H.J.6
Guerrero Llobet, S.7
Smit, M.J.8
Slagter-Menkema, L.9
Seitz, A.10
-
85
-
-
84931291649
-
Somatic CRISPR/Cas9-mediated tumour suppressor disruption enables versatile brain tumour modelling
-
Zuckermann, M., Hovestadt, V., Knobbe-Thomsen, C.B., Zapatka, M., Northcott, P.A., Schramm, K., Belic, J., Jones, D.T., Tschida, B., Moriarity, B., et al. Somatic CRISPR/Cas9-mediated tumour suppressor disruption enables versatile brain tumour modelling. Nat. Commun., 6, 2015, 7391.
-
(2015)
Nat. Commun.
, vol.6
, pp. 7391
-
-
Zuckermann, M.1
Hovestadt, V.2
Knobbe-Thomsen, C.B.3
Zapatka, M.4
Northcott, P.A.5
Schramm, K.6
Belic, J.7
Jones, D.T.8
Tschida, B.9
Moriarity, B.10
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