메뉴 건너뛰기




Volumn 11, Issue 6, 2012, Pages 3480-3486

PhosphoSiteAnalyzer: A bioinformatic platform for deciphering phospho proteomes using kinase predictions retrieved from networkin

Author keywords

bioinformatics tool; computational prediction; kinase substrate association; NetworKIN; networks; phosphorylation; statistical analysis

Indexed keywords

AMINO ACID; PHOSPHOTRANSFERASE; PROTEOME; PHOSPHOPROTEIN; PROTEIN KINASE;

EID: 84861801547     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr300016e     Document Type: Article
Times cited : (16)

References (24)
  • 1
    • 24944519450 scopus 로고    scopus 로고
    • Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
    • Larsen, M. R.; Thingholm, T. E.; Jensen, O. N.; Roepstorff, P.; Jorgensen, T. J. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns Mol. Cell. Proteom.: MCP 2005, 4 (7) 873-86
    • (2005) Mol. Cell. Proteom.: MCP , vol.4 , Issue.7 , pp. 873-886
    • Larsen, M.R.1    Thingholm, T.E.2    Jensen, O.N.3    Roepstorff, P.4    Jorgensen, T.J.5
  • 2
    • 84984933087 scopus 로고    scopus 로고
    • The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
    • Villen, J.; Gygi, S. P. The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry Nature Protocols 2008, 3 (10) 1630-8
    • (2008) Nature Protocols , vol.3 , Issue.10 , pp. 1630-1638
    • Villen, J.1    Gygi, S.P.2
  • 3
    • 33750456519 scopus 로고    scopus 로고
    • Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
    • Olsen, J. V.; Blagoev, B.; Gnad, F.; Macek, B.; Kumar, C.; Mortensen, P.; Mann, M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks Cell 2006, 127 (3) 635-48
    • (2006) Cell , vol.127 , Issue.3 , pp. 635-648
    • Olsen, J.V.1    Blagoev, B.2    Gnad, F.3    MacEk, B.4    Kumar, C.5    Mortensen, P.6    Mann, M.7
  • 10
    • 44149105911 scopus 로고    scopus 로고
    • PHOSIDA (phosphorylation site database): Management, structural and evolutionary investigation, and prediction of phosphosites
    • Gnad, F.; Ren, S.; Cox, J.; Olsen, J. V.; Macek, B.; Oroshi, M.; Mann, M. PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites Genome Biol 2007, 8 (11) R250
    • (2007) Genome Biol , vol.8 , Issue.11 , pp. 250
    • Gnad, F.1    Ren, S.2    Cox, J.3    Olsen, J.V.4    MacEk, B.5    Oroshi, M.6    Mann, M.7
  • 11
    • 2942598149 scopus 로고    scopus 로고
    • PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation
    • Hornbeck, P. V.; Chabra, I.; Kornhauser, J. M.; Skrzypek, E.; Zhang, B. PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation Proteomics 2004, 4 (6) 1551-61
    • (2004) Proteomics , vol.4 , Issue.6 , pp. 1551-1561
    • Hornbeck, P.V.1    Chabra, I.2    Kornhauser, J.M.3    Skrzypek, E.4    Zhang, B.5
  • 12
    • 80051631238 scopus 로고    scopus 로고
    • GProX, a User-Friendly Platform for Bioinformatics Analysis and Visualization of Quantitative Proteomics Data
    • not supplied.
    • Rigbolt, K. T.; Vanselow, J. T.; Blagoev, B. GProX, a User-Friendly Platform for Bioinformatics Analysis and Visualization of Quantitative Proteomics Data. Mol. Cell. Proteomics: MCP 2011, not supplied.
    • (2011) Mol. Cell. Proteomics: MCP
    • Rigbolt, K.T.1    Vanselow, J.T.2    Blagoev, B.3
  • 13
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da, W.; Sherman, B. T.; Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 2009, 4 (1) 44-57
    • (2009) Nat. Protoc. , vol.4 , Issue.1 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 14
    • 0042622251 scopus 로고    scopus 로고
    • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs
    • Obenauer, J. C.; Cantley, L. C.; Yaffe, M. B. Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs Nucleic Acids Res. 2003, 31 (13) 3635-41
    • (2003) Nucleic Acids Res. , vol.31 , Issue.13 , pp. 3635-3641
    • Obenauer, J.C.1    Cantley, L.C.2    Yaffe, M.B.3
  • 15
    • 23144434356 scopus 로고    scopus 로고
    • KinasePhos: A web tool for identifying protein kinase-specific phosphorylation sites
    • (Web Server issue, W226-9).
    • Huang, H. D.; Lee, T. Y.; Tzeng, S. W.; Horng, J. T., KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Res. 2005, 33, (Web Server issue, W226-9).
    • (2005) Nucleic Acids Res. , vol.33
    • Huang, H.D.1    Lee, T.Y.2    Tzeng, S.W.3    Horng, J.T.4
  • 16
    • 2942564430 scopus 로고    scopus 로고
    • Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
    • Blom, N.; Sicheritz-Ponten, T.; Gupta, R.; Gammeltoft, S.; Brunak, S. Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence Proteomics 2004, 4 (6) 1633-49
    • (2004) Proteomics , vol.4 , Issue.6 , pp. 1633-1649
    • Blom, N.1    Sicheritz-Ponten, T.2    Gupta, R.3    Gammeltoft, S.4    Brunak, S.5
  • 21
    • 84872753527 scopus 로고    scopus 로고
    • R Development Core Team, R: A Language and Environment forStatistical Computing.
    • R Development Core Team, R: A Language and Environment forStatistical Computing, http://www.R-project.org.
  • 23
    • 27944499451 scopus 로고    scopus 로고
    • An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
    • Schwartz, D.; Gygi, S. P. An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets Nature Biotechnol. 2005, 23 (11) 1391-8
    • (2005) Nature Biotechnol. , vol.23 , Issue.11 , pp. 1391-1398
    • Schwartz, D.1    Gygi, S.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.