-
2
-
-
84857553251
-
Using the scan-X web site to predict protein post-translational modifications
-
Submitted
-
Chou, M.F. and Schwartz, D. 2011. Using the scan-X web site to predict protein post-translational modifications. Curr. Protocol. Bioinform. Submitted.
-
(2011)
Curr. Protocol Using the Bioinform.
-
-
Chou, M.F.1
Schwartz, D.2
-
3
-
-
78651320816
-
Phospho.ELM: A database of phosphorylation sites-update 2011
-
Dinkel, H., Chica, C., Via, A., Gould, C.M., Jensen, L.J., Gibson, T.J., and Diella, F. 2011. Phospho.ELM: A database of phosphorylation sites-update 2011. Nucleic Acids Res. 39:D261-D267.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Dinkel, H.1
Chica, C.2
Via, A.3
Gould, C.M.4
Jensen, L.J.5
Gibson, T.J.6
Diella, F.7
-
4
-
-
75549090366
-
PhosPhAt: The Arabidopsis thaliana phosphorylation site database. An update
-
Durek, P., Schmidt, R., Heazlewood, J.L., Jones, A., MacLean, D., Nagel, A., Kersten, B., and Schulze, W.X. 2010. PhosPhAt: The Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res. 38:D828-D834.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Durek, P.1
Schmidt, R.2
Heazlewood, J.L.3
Jones, A.4
MacLean, D.5
Nagel, A.6
Kersten, B.7
Schulze, W.X.8
-
5
-
-
43349092663
-
CompariMotif: Quick and easy comparisons of sequence motifs
-
Edwards, R.J.,Davey,N.E., and Shields,D.C. 2008. CompariMotif: Quick and easy comparisons of sequence motifs. Bioinformatics 24:1307-1309.
-
(2008)
Bioinformatics
, vol.24
, pp. 1307-1309
-
-
Edwards, R.J.1
Davey, N.E.2
Shields, D.C.3
-
6
-
-
0000857494
-
An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
-
Eng, J.K., Mccormack, A.L., and Yates, J.R. 1994. An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. J. Am. Soc. Mass Spectrom. 5:976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
Mccormack, A.L.2
Yates, J.R.3
-
7
-
-
71749098088
-
ELM: The status of the 2010 eukaryotic linear motif resource
-
Gould, C.M., Diella, F., Via, A., Puntervoll, P., Gemund, C., Chabanis-Davidson, S., Michael, S., Sayadi, A., Bryne, J.C., Chica, C., Seiler, M., Davey, N.E., Haslam, N., Weatheritt, R.J., Budd, A., Hughes, T., Pas, J., Rychlewski, L., Trave, G., Aasland, R., Helmer-Citterich, M., Linding, R., and Gibson, T.J. 2010. ELM: The status of the 2010 eukaryotic linear motif resource. Nucleic Acids Res. 38:D167-D180.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Gould, C.M.1
Diella, F.2
Via, A.3
Puntervoll, P.4
Gemund, C.5
Chabanis-Davidson, S.6
Michael, S.7
Sayadi, A.8
Bryne, J.C.9
Chica, C.10
Seiler, M.11
Davey, N.E.12
Haslam, N.13
Weatheritt, R.J.14
Budd, A.15
Hughes, T.16
Pas, J.17
Rychlewski, L.18
Trave, G.19
Aasland, R.20
Helmer-Citterich, M.21
Linding, R.22
Gibson, T.J.23
more..
-
8
-
-
2942598149
-
PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation
-
Hornbeck, P.V., Chabra, I., Kornhauser, J.M., Skrzypek, E., and Zhang, B. 2004. PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 4:1551-1561.
-
(2004)
Proteomics
, vol.4
, pp. 1551-1561
-
-
Hornbeck, P.V.1
Chabra, I.2
Kornhauser, J.M.3
Skrzypek, E.4
Zhang, B.5
-
9
-
-
0025949006
-
IL- 1-converting enzyme requires aspartic acid residues for processing of the IL-1 beta precursor at two distinct sites and does not cleave 31-kDa IL-1 alpha
-
Howard, A.D., Kostura, M.J., Thornberry, N., Ding, G.J., Limjuco, G., Weidner, J., Salley, J.P., Hogquist, K.A., Chaplin, D.D., Mumford, R.A., Schmidt, J.A., and Tocci, M.J. 1991. IL-1-converting enzyme requires aspartic acid residues for processing of the IL-1 beta precursor at two distinct sites and does not cleave 31-kDa IL-1 alpha. J. Immunol. 147:2964-2969.
-
(1991)
J. Immunol.
, vol.147
, pp. 2964-2969
-
-
Howard, A.D.1
Kostura, M.J.2
Thornberry, N.3
Ding, G.J.4
Limjuco, G.5
Weidner, J.6
Salley, J.P.7
Hogquist, K.A.8
Chaplin, D.D.9
Mumford, R.A.10
Schmidt, J.A.11
Tocci, M.J.12
-
10
-
-
17644391197
-
A rapid method for determining protein kinase phosphorylation specificity
-
Hutti, J.E., Jarrell, E.T., Chang, J.D., Abbott, D.W., Storz, P., Toker,A., Cantley, L.C., and Turk,B.E. 2004. A rapid method for determining protein kinase phosphorylation specificity. Nat. Methods 1:27-29.
-
(2004)
Nat. Methods
, vol.1
, pp. 27-29
-
-
Hutti, J.E.1
Jarrell, E.T.2
Chang, J.D.3
Abbott, D.W.4
Storz, P.5
Toker, A.6
Cantley, L.C.7
Turk, B.E.8
-
11
-
-
58149193222
-
Human protein reference database-2009 update
-
Keshava Prasad, T.S., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A., Balakrishnan, L., Marimuthu, A., Banerjee, S., Somanathan, D.S., Sebastian, A., Rani, S., Ray, S., Harrys Kishore, C.J., Kanth, S., Ahmed, M., Kashyap, M.K., Mohmood, R., Ramachandra, Y.L., Krishna, V., Rahiman, B.A., Mohan, S., Ranganathan, P., Ramabadran, S., Chaerkady, R., and Pandey, A. 2009. Human protein reference database-2009 update. Nucleic Acids Res. 37:D767-D772.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
Balakrishnan, L.11
Marimuthu, A.12
Banerjee, S.13
Somanathan, D.S.14
Sebastian, A.15
Rani, S.16
Ray, S.17
Harrys Kishore, C.J.18
Kanth, S.19
Ahmed, M.20
Kashyap, M.K.21
Mohmood, R.22
Ramachandra, Y.L.23
Krishna, V.24
Rahiman, B.A.25
Mohan, S.26
Ranganathan, P.27
Ramabadran, S.28
Chaerkady, R.29
Pandey, A.30
more..
-
12
-
-
0037173088
-
Specificity and affinity motifs for Grb2 SH2-ligand interactions
-
Kessels, H.W., Ward, A.C., and Schumacher, T.N. 2002. Specificity and affinity motifs for Grb2 SH2-ligand interactions. Proc. Natl. Acad. Sci. U.S.A. 99:8524-8529.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 8524-8529
-
-
Kessels, H.W.1
Ward, A.C.2
Schumacher, T.N.3
-
13
-
-
0028231891
-
Delineation of a T-cell activation motif required for binding of protein tyrosine kinases containing tandem SH2 domains
-
Koyasu, S., Tse, A.G., Moingeon, P., Hussey, R.E., Mildonian, A., Hannisian, J., Clayton, L.K., and Reinherz, E.L. 1994. Delineation of a T-cell activation motif required for binding of protein tyrosine kinases containing tandem SH2 domains. Proc. Natl. Acad. Sci. U.S.A. 91:6693-6697.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 6693-6697
-
-
Koyasu, S.1
Tse, A.G.2
Moingeon, P.3
Hussey, R.E.4
Mildonian, A.5
Hannisian, J.6
Clayton, L.K.7
Reinherz, E.L.8
-
14
-
-
77955999636
-
Sitespecific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif
-
Matic, I., Schimmel, J., Hendriks, I.A., van Santen, M.A., van de Rijke, F., van Dam, H., Gnad, F., Mann, M., and Vertegaal, A.C. 2010. Sitespecific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif. Mol. Cell 39:641-652.
-
(2010)
Mol. Cell
, vol.39
, pp. 641-652
-
-
Matic, I.1
Schimmel, J.2
Hendriks, I.A.3
van Santen, M.A.4
van de Rijke, F.5
van Dam, H.6
Gnad, F.7
Mann, M.8
Vertegaal, A.C.9
-
15
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., Creasy, D.M., and Cottrell, J.S. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
16
-
-
79952752375
-
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation
-
Rigbolt, K.T., Prokhorova, T.A., Akimov, V., Henningsen, J., Johansen, P.T., Kratchmarova, I., Kassem, M., Mann, M., Olsen, J.V., and Blagoev, B. 2011. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. Sci. Signal. 4:rs3.
-
(2011)
Sci. Signal.
, vol.4
-
-
Rigbolt, K.T.1
Prokhorova, T.A.2
Akimov, V.3
Henningsen, J.4
Johansen, P.T.5
Kratchmarova, I.6
Kassem, M.7
Mann, M.8
Olsen, J.V.9
Blagoev, B.10
-
17
-
-
27944499451
-
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
-
Schwartz, D. and Gygi, S.P. 2005. An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat. Biotechnol. 23:1391-1398.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1391-1398
-
-
Schwartz, D.1
Gygi, S.P.2
-
18
-
-
0029916898
-
The amino acid at the X position of an Asn-X-Ser sequon is an important determinant of N-linked core-glycosylation efficiency
-
Shakin-Eshleman, S.H., Spitalnik, S.L., and Kasturi, L. 1996. The amino acid at the X position of an Asn-X-Ser sequon is an important determinant of N-linked core-glycosylation efficiency. J. Biol. Chem. 271:6363-6366.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 6363-6366
-
-
Shakin-Eshleman, S.H.1
Spitalnik, S.L.2
Kasturi, L.3
-
19
-
-
0028875162
-
Recognition and specificity in protein tyrosine kinasemediated signalling
-
Songyang, Z. and Cantley, L.C. 1995. Recognition and specificity in protein tyrosine kinasemediated signalling. Trends Biochem. Sci. 20:470-475.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 470-475
-
-
Songyang, Z.1
Cantley, L.C.2
-
20
-
-
0033617169
-
The nuclear dot protein sp100, characterization of domains necessary for dimerization, subcellular localization, and modification by small ubiquitin-like modifiers
-
Sternsdorf, T., Jensen, K., Reich, B., and Will, H. 1999. The nuclear dot protein sp100, characterization of domains necessary for dimerization, subcellular localization, and modification by small ubiquitin-like modifiers. J. Biol. Chem. 274:12555-12566.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 12555-12566
-
-
Sternsdorf, T.1
Jensen, K.2
Reich, B.3
Will, H.4
-
21
-
-
67849106825
-
Phosphorylation dynamics during early differentiation of human embryonic stem cells
-
Van Hoof, D., Munoz, J., Braam, S.R., Pinkse, M.W., Linding, R., Heck, A.J., Mummery, C.L., and Krijgsveld, J. 2009. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell 5:214-226.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 214-226
-
-
Van Hoof, D.1
Munoz, J.2
Braam, S.R.3
Pinkse, M.W.4
Linding, R.5
Heck, A.J.6
Mummery, C.L.7
Krijgsveld, J.8
|