-
1
-
-
84857839097
-
Biodiversity in Oscypek, a traditional Polish cheese, determined by culture-dependent and -independent approaches
-
Alegría, Á., Szczesny, P., Mayo, B., Bardowski, J., Kowalczyk, M., Biodiversity in Oscypek, a traditional Polish cheese, determined by culture-dependent and -independent approaches. Applied and Environmental Microbiology 78 (2012), 1890–1898.
-
(2012)
Applied and Environmental Microbiology
, vol.78
, pp. 1890-1898
-
-
Alegría, Á.1
Szczesny, P.2
Mayo, B.3
Bardowski, J.4
Kowalczyk, M.5
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., Basic local alignment search tool. Journal of Molecular Biology 215 (1990), 403–410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
84856282851
-
FastQC: A quality control tool for high throughput sequence data
-
Andrews, S., FastQC: A quality control tool for high throughput sequence data. http://www.bioinformatics.babraham.ac.uk/projects/fastqc, 2010.
-
(2010)
-
-
Andrews, S.1
-
4
-
-
84878848576
-
Marinobacter persicus sp. nov., a moderately halophilic bacterium from a saline lake in Iran
-
Bagheri, M., Amoozegar, M.A., Didari, M., Makhdoumi-Kakhki, A., Schumann, P., Spröer, C., et al. Marinobacter persicus sp. nov., a moderately halophilic bacterium from a saline lake in Iran. Antonie Van Leeuwenhoek 104 (2013), 47–54.
-
(2013)
Antonie Van Leeuwenhoek
, vol.104
, pp. 47-54
-
-
Bagheri, M.1
Amoozegar, M.A.2
Didari, M.3
Makhdoumi-Kakhki, A.4
Schumann, P.5
Spröer, C.6
-
5
-
-
19744362583
-
General aspects of cheese technology
-
3rd ed. P. Fox P. McSweeney T. Cogan T. Guinee Elsevier Academic Press London, UK
-
Bennet, R.J., Johnston, K.A., General aspects of cheese technology., 3rd ed. Fox, P., McSweeney, P., Cogan, T., Guinee, T., (eds.) Cheese: chemistry, physics and microbiology, Vol. 2, 2004, Elsevier Academic Press, London, UK, 23–50.
-
(2004)
Cheese: chemistry, physics and microbiology
, vol.2
, pp. 23-50
-
-
Bennet, R.J.1
Johnston, K.A.2
-
6
-
-
84860006840
-
Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale
-
Bokulich, N.A., Bamforth, C.W., Mills, D.A., Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale. PLoS One, 7, 2012, e35507.
-
(2012)
PLoS One
, vol.7
-
-
Bokulich, N.A.1
Bamforth, C.W.2
Mills, D.A.3
-
7
-
-
84884235124
-
Facility-specific ‘house’ microbiome drives microbial landscapes of artisan cheesemaking plants
-
Bokulich, N.A., Mills, D.A., Facility-specific ‘house’ microbiome drives microbial landscapes of artisan cheesemaking plants. Applied and Environmental Microbiology 79 (2013), 5214–5223.
-
(2013)
Applied and Environmental Microbiology
, vol.79
, pp. 5214-5223
-
-
Bokulich, N.A.1
Mills, D.A.2
-
8
-
-
84876187622
-
Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities
-
Bokulich, N.A., Mills, D.A., Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities. Applied and Environmental Microbiology 79 (2013), 2519–2526.
-
(2013)
Applied and Environmental Microbiology
, vol.79
, pp. 2519-2526
-
-
Bokulich, N.A.1
Mills, D.A.2
-
9
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger, A.M., Lohse, M., Usadel, B., Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30 (2014), 2114–2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
10
-
-
84874332235
-
Unraveling the microbiota of teat apices of clinically healthy lactating dairy cows, with special emphasis on coagulase-negative staphylococci
-
Braem, G., De Vliegher, S., Verbist, B., Piessens, V., Van Coillie, E., De Vuyst, L., et al. Unraveling the microbiota of teat apices of clinically healthy lactating dairy cows, with special emphasis on coagulase-negative staphylococci. Journal of Dairy Science 96 (2013), 1499–1510.
-
(2013)
Journal of Dairy Science
, vol.96
, pp. 1499-1510
-
-
Braem, G.1
De Vliegher, S.2
Verbist, B.3
Piessens, V.4
Van Coillie, E.5
De Vuyst, L.6
-
11
-
-
84948974918
-
Relationships among house, rind and core microbiotas during manufacture of traditional Italian cheeses at the same dairy plant
-
Calasso, M., Ercolini, D., Mancini, L., Stellato, G., Minervini, F., Di Cagno, R., et al. Relationships among house, rind and core microbiotas during manufacture of traditional Italian cheeses at the same dairy plant. Food Microbiology 54 (2016), 115–126.
-
(2016)
Food Microbiology
, vol.54
, pp. 115-126
-
-
Calasso, M.1
Ercolini, D.2
Mancini, L.3
Stellato, G.4
Minervini, F.5
Di Cagno, R.6
-
12
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso, J.G., Lauber, C., Walters, W.A., Berg-Lyons, D., Lozupone, C.A., Turnbaugh, P.J., et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences of the United States of America 108 (2011), 4516–4522.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
-
13
-
-
33244493754
-
Lactobacillus rennini sp. nov., isolated from rennin and associated with cheese spoilage
-
Chenoll, E., Macián, C., Aznar, R., Lactobacillus rennini sp. nov., isolated from rennin and associated with cheese spoilage. International Journal of Systematic and Evolutionary Microbiology 56 (2006), 449–452.
-
(2006)
International Journal of Systematic and Evolutionary Microbiology
, vol.56
, pp. 449-452
-
-
Chenoll, E.1
Macián, C.2
Aznar, R.3
-
14
-
-
80054889513
-
Diversity and assessment of potential risk factors of Gram-negative isolates associated with French cheeses
-
Coton, M., Delbés-Paus, C., Irlinger, F., Desmasures, N., Le Fleche, A., Stahl, V., et al. Diversity and assessment of potential risk factors of Gram-negative isolates associated with French cheeses. Food Microbiology 29 (2012), 88–98.
-
(2012)
Food Microbiology
, vol.29
, pp. 88-98
-
-
Coton, M.1
Delbés-Paus, C.2
Irlinger, F.3
Desmasures, N.4
Le Fleche, A.5
Stahl, V.6
-
15
-
-
85010011071
-
Exploring the impacts of postharvest processing on the microbiota and metabolite profiles during green coffee bean production
-
Article e02398–16
-
De Bruyn, F., Zhang, S.J., Pothakos, V., Torres, J., Lambot, C., Moroni, A.V., et al. Exploring the impacts of postharvest processing on the microbiota and metabolite profiles during green coffee bean production. Applied and Environmental Microbiology, 83, 2017 Article e02398–16.
-
(2017)
Applied and Environmental Microbiology
, vol.83
-
-
De Bruyn, F.1
Zhang, S.J.2
Pothakos, V.3
Torres, J.4
Lambot, C.5
Moroni, A.V.6
-
16
-
-
84855333257
-
Genus III. Tetragenococcus
-
2nd ed. P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey et al. (eds.) Springer New York, NY, USA
-
Dicks, L.M.T., Holzapfel, W.H., Satomi, M., Kimura, B., Fujii, T., Genus III. Tetragenococcus., 2nd ed. De Vos, P., Garrity, G.M., Jones, D., Krieg, N.R., Ludwig, W., Rainey, F.A., et al. (eds.) Bergey's manual of systematic bacteriology, Vol. 3, 2009, Springer, New York, NY, USA, 611–616.
-
(2009)
Bergey's manual of systematic bacteriology
, vol.3
, pp. 611-616
-
-
Dicks, L.M.T.1
Holzapfel, W.H.2
Satomi, M.3
Kimura, B.4
Fujii, T.5
-
17
-
-
0344897088
-
Idiomarina loihiensis sp. nov., a halophilic γ-proteobacterium from the Lō‘ihi submarine volcano, Hawai‘i
-
Donachie, S.P., Hou, S., Gregory, T.S., Malahoff, A., Alam, M., Idiomarina loihiensis sp. nov., a halophilic γ-proteobacterium from the Lō‘ihi submarine volcano, Hawai‘i. International Journal of Systematic and Evolutionary Microbiology 53 (2003), 1873–1879.
-
(2003)
International Journal of Systematic and Evolutionary Microbiology
, vol.53
, pp. 1873-1879
-
-
Donachie, S.P.1
Hou, S.2
Gregory, T.S.3
Malahoff, A.4
Alam, M.5
-
18
-
-
84896729839
-
How many 16S-based studies should be included in a metagenomic conference? It may be a matter of etymology
-
Esposito, A., Kirschberg, M., How many 16S-based studies should be included in a metagenomic conference? It may be a matter of etymology. FEMS Microbiology Letters 351 (2014), 145–146.
-
(2014)
FEMS Microbiology Letters
, vol.351
, pp. 145-146
-
-
Esposito, A.1
Kirschberg, M.2
-
19
-
-
77957150968
-
Cheese: An overview
-
3rd ed. P. Fox P. McSweeney T. Cogan T. Guinee Elsevier Academic Press London, UK
-
Fox, P.F., McSweeney, P.L.H., Cheese: An overview., 3rd ed. Fox, P., McSweeney, P., Cogan, T., Guinee, T., (eds.) Cheese: chemistry, physics and microbiology, Vol. 2, 2004, Elsevier Academic Press, London, UK, 1–19.
-
(2004)
Cheese: chemistry, physics and microbiology
, vol.2
, pp. 1-19
-
-
Fox, P.F.1
McSweeney, P.L.H.2
-
20
-
-
85049661107
-
The principles of cheese making: An overview
-
V.R. Preedy R.R. Watson V.B. Patel Wageningen Academic Publishers Wageningen, The Netherlands
-
Freitas, A.C., Rodrigues, D., Duarte, A.C., Gomes, A.M., The principles of cheese making: An overview. Preedy, V.R., Watson, R.R., Patel, V.B., (eds.) Handbook of cheese in health: Production, nutrition and medical sciences, 2013, Wageningen Academic Publishers, Wageningen, The Netherlands, 55–72.
-
(2013)
Handbook of cheese in health: Production, nutrition and medical sciences
, pp. 55-72
-
-
Freitas, A.C.1
Rodrigues, D.2
Duarte, A.C.3
Gomes, A.M.4
-
21
-
-
77956095592
-
Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing
-
Ghai, R., Martin-Cuadrado, A., Molto, A.G., Heredia, I.G., Cabrera, R., Martin, J., et al. Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing. The ISME Journal 4 (2010), 1154–1166.
-
(2010)
The ISME Journal
, vol.4
, pp. 1154-1166
-
-
Ghai, R.1
Martin-Cuadrado, A.2
Molto, A.G.3
Heredia, I.G.4
Cabrera, R.5
Martin, J.6
-
23
-
-
84934276146
-
Salt in cheese
-
P.L.H. McSweeney 1st ed. Woodhead Publishing Limited Cambridge, UK
-
Guinee, T.P., Salt in cheese. McSweeney, P.L.H., (eds.) Cheese problems solved, 1st ed., 2007, Woodhead Publishing Limited, Cambridge, UK, 80–95.
-
(2007)
Cheese problems solved
, pp. 80-95
-
-
Guinee, T.P.1
-
24
-
-
33847702910
-
MEGAN analysis of metagenome data
-
Huson, D., Auch, A., Qi, J., Schuster, S., MEGAN analysis of metagenome data. Genome Research 17 (2007), 377–386.
-
(2007)
Genome Research
, vol.17
, pp. 377-386
-
-
Huson, D.1
Auch, A.2
Qi, J.3
Schuster, S.4
-
25
-
-
84861562148
-
Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity
-
Illeghems, K., De Vuyst, L., Papalexandratou, Z., Weckx, S., Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity. PLoS One, 7, 2012, e38040.
-
(2012)
PLoS One
, vol.7
-
-
Illeghems, K.1
De Vuyst, L.2
Papalexandratou, Z.3
Weckx, S.4
-
26
-
-
84866373540
-
Genome sequence of Staphylococcus equorum subsp. equorum Mu2, isolated from a French smear-ripened cheese
-
Irlinger, F., Loux, V., Bento, P., Gibrat, J.F., Straub, C., Bonnarme, P., et al. Genome sequence of Staphylococcus equorum subsp. equorum Mu2, isolated from a French smear-ripened cheese. Journal of Bacteriology 194 (2012), 5141–5142.
-
(2012)
Journal of Bacteriology
, vol.194
, pp. 5141-5142
-
-
Irlinger, F.1
Loux, V.2
Bento, P.3
Gibrat, J.F.4
Straub, C.5
Bonnarme, P.6
-
27
-
-
33847042269
-
Presence of halophilic and alkaliphilic lactic acid bacteria in various cheeses
-
Ishikawa, M., Kodama, K., Yasuda, H., Okamoto-Kainuma, A., Koizumi, K., Yamasato, K., Presence of halophilic and alkaliphilic lactic acid bacteria in various cheeses. Letters in Applied Microbiology 44 (2007), 308–313.
-
(2007)
Letters in Applied Microbiology
, vol.44
, pp. 308-313
-
-
Ishikawa, M.1
Kodama, K.2
Yasuda, H.3
Okamoto-Kainuma, A.4
Koizumi, K.5
Yamasato, K.6
-
28
-
-
0034033434
-
Idiomarina gen. nov., comprising novel indigenous deep-sea bacteria from the Pacific Ocean, including descriptions of two species, Idiomarina abyssalis sp. nov. and Idiomarina zobellii sp. nov
-
Ivanova, E.P., Romanenko, L.A., Chun, J., Matte, M.H., Matte, G.R., Mikhailov, V.V., et al. Idiomarina gen. nov., comprising novel indigenous deep-sea bacteria from the Pacific Ocean, including descriptions of two species, Idiomarina abyssalis sp. nov. and Idiomarina zobellii sp. nov. International Journal of Systematic and Evolutionary Microbiology 50 (2000), 901–907.
-
(2000)
International Journal of Systematic and Evolutionary Microbiology
, vol.50
, pp. 901-907
-
-
Ivanova, E.P.1
Romanenko, L.A.2
Chun, J.3
Matte, M.H.4
Matte, G.R.5
Mikhailov, V.V.6
-
30
-
-
84880751306
-
Community dynamics of coagulase-negative staphylococci during spontaneous artisan-type meat fermentations differ between smoking and moulding treatments
-
Janssens, M., Myter, N., De Vuyst, L., Leroy, F., Community dynamics of coagulase-negative staphylococci during spontaneous artisan-type meat fermentations differ between smoking and moulding treatments. International Journal of Food Microbiology 166 (2013), 168–175.
-
(2013)
International Journal of Food Microbiology
, vol.166
, pp. 168-175
-
-
Janssens, M.1
Myter, N.2
De Vuyst, L.3
Leroy, F.4
-
31
-
-
53449102443
-
Genetic and physiological diversity of Tetragenococcus halophilus strains isolated from sugar- and salt-rich environments
-
Justé A., Lievens, B., Frans, I., Marsh, T.L., Klingeberg, M., Michiels, C.W., et al. Genetic and physiological diversity of Tetragenococcus halophilus strains isolated from sugar- and salt-rich environments. Microbiology 154 (2008), 2600–2610.
-
(2008)
Microbiology
, vol.154
, pp. 2600-2610
-
-
Justé, A.1
Lievens, B.2
Frans, I.3
Marsh, T.L.4
Klingeberg, M.5
Michiels, C.W.6
-
32
-
-
84946594583
-
Experimental design and bioinformatics analysis for the application of metagenomics in environmental sciences and biotechnology
-
Ju, F., Zhang, T., Experimental design and bioinformatics analysis for the application of metagenomics in environmental sciences and biotechnology. Environmental Science and Technology 49 (2015), 12628–12640.
-
(2015)
Environmental Science and Technology
, vol.49
, pp. 12628-12640
-
-
Ju, F.1
Zhang, T.2
-
33
-
-
77953963893
-
Halomonas jeotgali sp. nov., a new moderate halophilic bacterium isolated from a traditional fermented seafood
-
Kim, M.S., Roh, S.W., Bae, J.W., Halomonas jeotgali sp. nov., a new moderate halophilic bacterium isolated from a traditional fermented seafood. Journal of Microbiology 48 (2010), 404–410.
-
(2010)
Journal of Microbiology
, vol.48
, pp. 404-410
-
-
Kim, M.S.1
Roh, S.W.2
Bae, J.W.3
-
34
-
-
0034213698
-
Differentiation of Tetragenococcus populations occurring in products and manufacturing processes of puffer fish ovaries fermented with rice-bran
-
Kobayashi, T., Kimura, B., Fujii, T., Differentiation of Tetragenococcus populations occurring in products and manufacturing processes of puffer fish ovaries fermented with rice-bran. International Journal of Food Microbiology 56 (2000), 211–218.
-
(2000)
International Journal of Food Microbiology
, vol.56
, pp. 211-218
-
-
Kobayashi, T.1
Kimura, B.2
Fujii, T.3
-
35
-
-
84886099720
-
Towards a unified paradigm for sequence-based identification of fungi
-
Kõljalg, U., Nilsson, R.H., Abarenkov, K., Tedersoo, L., Taylor, A.F.S., Bahram, M., Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology 22 (2014), 5271–5277.
-
(2014)
Molecular Ecology
, vol.22
, pp. 5271-5277
-
-
Kõljalg, U.1
Nilsson, R.H.2
Abarenkov, K.3
Tedersoo, L.4
Taylor, A.F.S.5
Bahram, M.6
-
36
-
-
0033195263
-
Survival of Listeria monocytogenes in commercial cheese brines
-
Larson, A.E., Johnson, E.A., Nelson, J.H., Survival of Listeria monocytogenes in commercial cheese brines. Journal of Dairy Science 82 (1999), 1860–1868.
-
(1999)
Journal of Dairy Science
, vol.82
, pp. 1860-1868
-
-
Larson, A.E.1
Johnson, E.A.2
Nelson, J.H.3
-
37
-
-
84896981679
-
Microbial species diversity, community dynamics, and metabolite kinetics of water kefir fermentation
-
Laureys, D., De Vuyst, L., Microbial species diversity, community dynamics, and metabolite kinetics of water kefir fermentation. Applied and Environmental Microbiology 80 (2014), 2564–2572.
-
(2014)
Applied and Environmental Microbiology
, vol.80
, pp. 2564-2572
-
-
Laureys, D.1
De Vuyst, L.2
-
38
-
-
84994798348
-
Microbial community characteristics in industrial matured Chinese paocai, a fermented vegetable food, from different factories
-
Liang, H., Zhang, A., Wu, Z., Cheng, S., Yu, W., Zhang, W., Microbial community characteristics in industrial matured Chinese paocai, a fermented vegetable food, from different factories. Food Science and Technology Research 22 (2016), 595–604.
-
(2016)
Food Science and Technology Research
, vol.22
, pp. 595-604
-
-
Liang, H.1
Zhang, A.2
Wu, Z.3
Cheng, S.4
Yu, W.5
Zhang, W.6
-
39
-
-
84923818301
-
Microbiology of sugar-rich environments: Diversity, ecology and system constraints
-
Lievens, B., Hallsworth, J.E., Pozo, M.I., Belgacem, Z.B., Stevenson, A., Willems, K.A., et al. Microbiology of sugar-rich environments: Diversity, ecology and system constraints. Environmental Microbiology 17 (2015), 278–298.
-
(2015)
Environmental Microbiology
, vol.17
, pp. 278-298
-
-
Lievens, B.1
Hallsworth, J.E.2
Pozo, M.I.3
Belgacem, Z.B.4
Stevenson, A.5
Willems, K.A.6
-
40
-
-
85033802250
-
Diversity within Italian cheesemaking brine-associated bacterial communities evidenced by massive parallel 16S rRNA gene tag sequencing
-
Marino, M., Innocente, N., Maifreni, M., Mounier, J., Cobo-Díaz, J.F., Coton, E., et al. Diversity within Italian cheesemaking brine-associated bacterial communities evidenced by massive parallel 16S rRNA gene tag sequencing. Frontiers in Microbiology, 8, 2017, 2119.
-
(2017)
Frontiers in Microbiology
, vol.8
, pp. 2119
-
-
Marino, M.1
Innocente, N.2
Maifreni, M.3
Mounier, J.4
Cobo-Díaz, J.F.5
Coton, E.6
-
41
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M., Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.Journal 17 (2011), 1–10.
-
(2011)
EMBnet.Journal
, vol.17
, pp. 1-10
-
-
Martin, M.1
-
42
-
-
32044437371
-
Surface microflora of four smear-ripened cheeses
-
Mounier, J., Gelsomino, R., Goerges, S., Vancanneyt, M., Vandemeulebroecke, K., Hoste, B., et al. Surface microflora of four smear-ripened cheeses. Applied and Environmental Microbiology 71 (2005), 6489–6500.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 6489-6500
-
-
Mounier, J.1
Gelsomino, R.2
Goerges, S.3
Vancanneyt, M.4
Vandemeulebroecke, K.5
Hoste, B.6
-
43
-
-
33747090845
-
Sources of the adventitious microflora of a smear-ripened cheese
-
Mounier, J., Goerges, S., Gelsomine, R., Vancanneyt, M., Vandemeulebroecke, K., Hoste, B., et al. Sources of the adventitious microflora of a smear-ripened cheese. Journal of Applied Microbiology 101 (2006), 668–681.
-
(2006)
Journal of Applied Microbiology
, vol.101
, pp. 668-681
-
-
Mounier, J.1
Goerges, S.2
Gelsomine, R.3
Vancanneyt, M.4
Vandemeulebroecke, K.5
Hoste, B.6
-
44
-
-
84921963430
-
Survival of Escherichia coli O157:H7 during manufacture and storage of white brined cheese
-
Osaili, T.M., Al-Nabulsi, A.A., Olaimat, A.N., Shaker, R.R., Taha, M., Holley, R.A., Survival of Escherichia coli O157:H7 during manufacture and storage of white brined cheese. Journal of Food Science 79 (2014), M1750–M1755.
-
(2014)
Journal of Food Science
, vol.79
, pp. M1750-M1755
-
-
Osaili, T.M.1
Al-Nabulsi, A.A.2
Olaimat, A.N.3
Shaker, R.R.4
Taha, M.5
Holley, R.A.6
-
45
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., et al. SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 35 (2007), 7188–7196.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
-
46
-
-
13444306641
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt, K.D., Tatusova, T., Maglott, D.R., NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Research 33 (2005), 501–504.
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 501-504
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
47
-
-
78650038811
-
Halomonas titanicae sp. nov., a halophilic bacterium isolated from the RMS Titanic
-
Sánchez-Porro, C., Kaur, B., Mann, H., Ventosa, A., Halomonas titanicae sp. nov., a halophilic bacterium isolated from the RMS Titanic. International Journal of Systematic and Evolutionary Microbiology 60 (2010), 2768–2774.
-
(2010)
International Journal of Systematic and Evolutionary Microbiology
, vol.60
, pp. 2768-2774
-
-
Sánchez-Porro, C.1
Kaur, B.2
Mann, H.3
Ventosa, A.4
-
48
-
-
35649007277
-
Chromohalobacter japonicus sp. nov., a moderately halophilic bacterium isolated from a Japanese salty food
-
Sánchez-Porro, C., Tokunaga, H., Tokunaga, M., Ventosa, A., Chromohalobacter japonicus sp. nov., a moderately halophilic bacterium isolated from a Japanese salty food. International Journal of Systematic and Evolutionary Microbiology 57 (2007), 2262–2266.
-
(2007)
International Journal of Systematic and Evolutionary Microbiology
, vol.57
, pp. 2262-2266
-
-
Sánchez-Porro, C.1
Tokunaga, H.2
Tokunaga, M.3
Ventosa, A.4
-
49
-
-
84884350148
-
Microbial background flora in small-scale cheese production facilities does not inhibit growth and surface attachment of Listeria monocytogenes
-
Schirmer, B.C.T., Heir, E., Møretrø T., Skaar, I., Langsrud, S., Microbial background flora in small-scale cheese production facilities does not inhibit growth and surface attachment of Listeria monocytogenes. Journal of Dairy Science 96 (2013), 6161–6171.
-
(2013)
Journal of Dairy Science
, vol.96
, pp. 6161-6171
-
-
Schirmer, B.C.T.1
Heir, E.2
Møretrø, T.3
Skaar, I.4
Langsrud, S.5
-
50
-
-
0021673023
-
Staphylococcus arlettae sp. nov., S. equorum sp. nov., and S. kloosii sp. nov.: Three new coagulase-negative, novobiocin-resistant species from animals
-
Schleifer, K.H., Kilpper-Bälz, R., Devriese, L.A., Staphylococcus arlettae sp. nov., S. equorum sp. nov., and S. kloosii sp. nov.: Three new coagulase-negative, novobiocin-resistant species from animals. Systematic and Applied Microbiology 5 (1984), 501–509.
-
(1984)
Systematic and Applied Microbiology
, vol.5
, pp. 501-509
-
-
Schleifer, K.H.1
Kilpper-Bälz, R.2
Devriese, L.A.3
-
51
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., et al. Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 75 (2009), 7537–7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
52
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder, R., Edwards, R., Quality control and preprocessing of metagenomic datasets. Bioinformatics 27 (2011), 863–864.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
53
-
-
84899849757
-
Cultivation-independent analysis of microbial communities on Austrian raw milk hard cheese rinds
-
Schornsteiner, E., Mann, E., Bereuter, O., Wagner, M., Schmitz-Esser, S., Cultivation-independent analysis of microbial communities on Austrian raw milk hard cheese rinds. International Journal of Food Microbiology 180 (2014), 88–97.
-
(2014)
International Journal of Food Microbiology
, vol.180
, pp. 88-97
-
-
Schornsteiner, E.1
Mann, E.2
Bereuter, O.3
Wagner, M.4
Schmitz-Esser, S.5
-
55
-
-
84946015800
-
Coexistence of lactic acid bacteria and potential spoilage microbiota in a dairy processing environment
-
Stellato, G., De Filippis, F., La Storia, A., Ercolini, D., Coexistence of lactic acid bacteria and potential spoilage microbiota in a dairy processing environment. Applied and Environmental Microbiology 81 (2015), 7893–7904.
-
(2015)
Applied and Environmental Microbiology
, vol.81
, pp. 7893-7904
-
-
Stellato, G.1
De Filippis, F.2
La Storia, A.3
Ercolini, D.4
-
56
-
-
33646088966
-
Determination of microbiological contamination sources during Turkish white cheese production
-
Temelli, S., Anar, Ş., Sen, C., Akyuva, P., Determination of microbiological contamination sources during Turkish white cheese production. Food Control 11 (2006), 856–861.
-
(2006)
Food Control
, vol.11
, pp. 856-861
-
-
Temelli, S.1
Anar, Ş.2
Sen, C.3
Akyuva, P.4
-
57
-
-
0024447236
-
Classification of “Chromohalobacterium marismortui” in a new genus, Chromohalobacter gen. nov., as Chromohalobacter marismortui comb. nov., nom. rev
-
Ventosa, A., Gutierrez, M.C., Garcia, M.T., Ruiz-Berraquero, F., Classification of “Chromohalobacterium marismortui” in a new genus, Chromohalobacter gen. nov., as Chromohalobacter marismortui comb. nov., nom. rev. International Journal of Systematic Bacteriology 39 (1989), 382–386.
-
(1989)
International Journal of Systematic Bacteriology
, vol.39
, pp. 382-386
-
-
Ventosa, A.1
Gutierrez, M.C.2
Garcia, M.T.3
Ruiz-Berraquero, F.4
-
58
-
-
0018869340
-
Halomonas elongata, a new genus and species of extremely salt-tolerant bacteria
-
Vreeland, R.H., Litchfield, C.D., Martin, E.L., Elliot, E., Halomonas elongata, a new genus and species of extremely salt-tolerant bacteria. International Journal of Systematic Bacteriology 30 (1980), 485–495.
-
(1980)
International Journal of Systematic Bacteriology
, vol.30
, pp. 485-495
-
-
Vreeland, R.H.1
Litchfield, C.D.2
Martin, E.L.3
Elliot, E.4
-
59
-
-
84905898989
-
The fate of Listeria monocytogenes in brine and on Gouda cheese following artificial contamination during brining
-
Wemmenhove, E., Beumer, R.R., van Hooijdonk, A.C.M., Zwietering, M.H., Wells-Bennik, M.H.J., The fate of Listeria monocytogenes in brine and on Gouda cheese following artificial contamination during brining. Internationl Dairy Journal 39 (2014), 253–258.
-
(2014)
Internationl Dairy Journal
, vol.39
, pp. 253-258
-
-
Wemmenhove, E.1
Beumer, R.R.2
van Hooijdonk, A.C.M.3
Zwietering, M.H.4
Wells-Bennik, M.H.J.5
-
60
-
-
84899090573
-
Kraken: Ultrafast metagenomic sequence classification using exact alignments
-
Wood, D.E., Salzberg, S.L., Kraken: Ultrafast metagenomic sequence classification using exact alignments. Genome Biology, 15, 2014, R46.
-
(2014)
Genome Biology
, vol.15
, pp. R46
-
-
Wood, D.E.1
Salzberg, S.L.2
-
61
-
-
0036126815
-
Microbes from raw milk for fermented dairy products
-
Wouters, J.T.M., Ayad, E.H.E., Hugenholtz, J., Smit, G., Microbes from raw milk for fermented dairy products. International Dairy Journal 12 (2012), 91–109.
-
(2012)
International Dairy Journal
, vol.12
, pp. 91-109
-
-
Wouters, J.T.M.1
Ayad, E.H.E.2
Hugenholtz, J.3
Smit, G.4
-
62
-
-
34547471478
-
Halomonas saccharevitans sp. nov., Halomonas arcis sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria isolated from hypersaline environments of China
-
Xu, X.W., Wu, Y.H., Zhou, Z., Wang, C.S., Zhou, Y.G., Zhang, H.B., et al. Halomonas saccharevitans sp. nov., Halomonas arcis sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria isolated from hypersaline environments of China. International Journal of Systematic and Evolutionary Microbiology 57 (2007), 1619–1624.
-
(2007)
International Journal of Systematic and Evolutionary Microbiology
, vol.57
, pp. 1619-1624
-
-
Xu, X.W.1
Wu, Y.H.2
Zhou, Z.3
Wang, C.S.4
Zhou, Y.G.5
Zhang, H.B.6
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