메뉴 건너뛰기




Volumn 78, Issue 6, 2012, Pages 1890-1898

Biodiversity in Oscypek, a traditional Polish Cheese, determined by culture-dependent and -independent approaches

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA GENE; 454-PYROSEQUENCING; AMPLICONS; BACTERIAL DIVERSITY; BACTERIAL GENUS; DENATURING GRADIENT GEL ELECTROPHORESES (DGGE); FUTURE APPLICATIONS; GAIN INSIGHT; LACTOCOCCUS; LEUCONOSTOC; MICROBIAL GROUPS; MICROBIOTAS; PCR-DGGE; PYROSEQUENCING; STARTER CULTURES;

EID: 84857839097     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.06081-11     Document Type: Article
Times cited : (132)

References (50)
  • 1
    • 77956188822 scopus 로고    scopus 로고
    • Bacteriocins produced by wild Lactococcus lactis strains isolated from traditional, starter-free cheeses made of raw milk
    • Alegría A, Delgado S, Roces C, López B, Mayo B. 2010. Bacteriocins produced by wild Lactococcus lactis strains isolated from traditional, starter-free cheeses made of raw milk. Int. J. Food Microbiol. 143:61-66.
    • (2010) Int. J. Food Microbiol. , vol.143 , pp. 61-66
    • Alegría, A.1    Delgado, S.2    Roces, C.3    López, B.4    Mayo, B.5
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 77954863593 scopus 로고    scopus 로고
    • Terminal restriction fragment polymorphism and automated ribosomal intergenic spacer analysis profiling of fungal communities in Camembert cheese
    • Arteau M, Labrie S, Roy D. 2010. Terminal restriction fragment polymorphism and automated ribosomal intergenic spacer analysis profiling of fungal communities in Camembert cheese. Int. Dairy J. 20:545-554.
    • (2010) Int. Dairy J. , vol.20 , pp. 545-554
    • Arteau, M.1    Labrie, S.2    Roy, D.3
  • 4
    • 0033451975 scopus 로고    scopus 로고
    • Flavour forming abilities and amino acid requirements of Lactococcus lactis strains isolated from artisanal and non-dairy origin
    • Ayad EHE, Verheul A, de Jong C, Wouters JTM, Smit G. 1999. Flavour forming abilities and amino acid requirements of Lactococcus lactis strains isolated from artisanal and non-dairy origin. Int. Dairy J. 9:725-735.
    • (1999) Int. Dairy J. , vol.9 , pp. 725-735
    • Ayad, E.H.E.1    Verheul, A.2    de Jong, C.3    Wouters, J.T.M.4    Smit, G.5
  • 5
    • 0035129116 scopus 로고    scopus 로고
    • Enhanced flavour formation by combination of selected lactococci from industrial and artisanal origin with focus on completion of a metabolic pathway
    • Ayad EHE, Verheul A, Engels WJ, Wouters JT, Smit G. 2001. Enhanced flavour formation by combination of selected lactococci from industrial and artisanal origin with focus on completion of a metabolic pathway. J. Appl. Microbiol. 90:59-67.
    • (2001) J. Appl. Microbiol. , vol.90 , pp. 59-67
    • Ayad, E.H.E.1    Verheul, A.2    Engels, W.J.3    Wouters, J.T.4    Smit, G.5
  • 6
    • 16644374516 scopus 로고    scopus 로고
    • Psychrophilic prokaryote structural-functional relationships, biogeography and evolution within marine sediment
    • Bowman JP. 2004. Psychrophilic prokaryote structural-functional relationships, biogeography and evolution within marine sediment. Cell. Mol. Biol. 50:503-515.
    • (2004) Cell. Mol. Biol. , vol.50 , pp. 503-515
    • Bowman, J.P.1
  • 7
    • 22544462274 scopus 로고    scopus 로고
    • Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia
    • Bowman JP, Nichols DS. 2005. Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia. Int. J. Syst. Evol. Microbiol. 55:1471-1486.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1471-1486
    • Bowman, J.P.1    Nichols, D.S.2
  • 9
    • 0036095105 scopus 로고    scopus 로고
    • An application of PCR-DGGE analysis to profile the yeast populations in raw milk
    • Cocolin L, Aggio D, Manzano M, Cantoni C, Comi G. 2002. An application of PCR-DGGE analysis to profile the yeast populations in raw milk. Int. Dairy J. 12:407-411.
    • (2002) Int. Dairy J. , vol.12 , pp. 407-411
    • Cocolin, L.1    Aggio, D.2    Manzano, M.3    Cantoni, C.4    Comi, G.5
  • 10
    • 0004919517 scopus 로고    scopus 로고
    • Ph.D. dissertation. Research School of Biosciences, University of Kent, Canterbury, England
    • Coloqhoun JA. 1997. Discovery of deep-sea actinomycetes. Ph.D. dissertation. Research School of Biosciences, University of Kent, Canterbury, England.
    • (1997) Discovery of deep-sea actinomycetes
    • Coloqhoun, J.A.1
  • 12
    • 33947355835 scopus 로고    scopus 로고
    • Monitoring bacterial communities in raw milk and cheese by culture-dependent and-independent 16S rRNA gene-based analyses
    • Delbès C, Ali-Mandjee L, Montel MC. 2007. Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses. Appl. Environ. Microbiol. 73:1882-1891.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1882-1891
    • Delbès, C.1    Ali-Mandjee, L.2    Montel, M.C.3
  • 13
    • 79957922792 scopus 로고    scopus 로고
    • Highthroughput sequence-based analysis of the bacterial composition of kefir and an associated kefir grain
    • Dobson A, O'Sullivan O, Cotter PD, Ross P, Hill C. 2011. Highthroughput sequence-based analysis of the bacterial composition of kefir and an associated kefir grain. FEMS Microbiol. Lett. 320:56-62.
    • (2011) FEMS Microbiol. Lett. , vol.320 , pp. 56-62
    • Dobson, A.1    O'Sullivan, O.2    Cotter, P.D.3    Ross, P.4    Hill, C.5
  • 14
    • 0037479834 scopus 로고    scopus 로고
    • Bacterial community dynamics during production of registered designation of origin Saler cheese as evaluated by 16S rRNA gene single-strand conformation polymorphism analysis
    • Duthoit F, Godon JJ, Montel MC. 2003. Bacterial community dynamics during production of registered designation of origin Saler cheese as evaluated by 16S rRNA gene single-strand conformation polymorphism analysis. Appl. Environ. Microbiol. 69:3840-3848.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3840-3848
    • Duthoit, F.1    Godon, J.J.2    Montel, M.C.3
  • 15
    • 33847206086 scopus 로고    scopus 로고
    • Biodiversity of bacterial ecosystems in traditional Egyptian Domiati cheese
    • El-Baradei G, Delacroix-Buchet A, Ogier JC. 2007. Biodiversity of bacterial ecosystems in traditional Egyptian Domiati cheese. Appl. Environ. Microbiol. 73:1248-1255.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1248-1255
    • El-Baradei, G.1    Delacroix-Buchet, A.2    Ogier, J.C.3
  • 16
    • 17644395922 scopus 로고    scopus 로고
    • Monitoring the lactic acid bacterial diversity during shochu fermentation by PCR-denaturing gradient gel electrophoresis
    • Endo A, Okada S. 2005. Monitoring the lactic acid bacterial diversity during shochu fermentation by PCR-denaturing gradient gel electrophoresis. J. Biosci. Bioeng. 99:216-221.
    • (2005) J. Biosci. Bioeng. , vol.99 , pp. 216-221
    • Endo, A.1    Okada, S.2
  • 17
    • 82955168976 scopus 로고    scopus 로고
    • Monitoring of microbial metabolites and bacterial diversity in beef stored under different packaging conditions
    • Ercolini D, et al. 2011. Monitoring of microbial metabolites and bacterial diversity in beef stored under different packaging conditions. Appl. Environ. Microbiol. 77:7372-7381.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 7372-7381
    • Ercolini, D.1
  • 18
    • 0037640904 scopus 로고    scopus 로고
    • Bacterial community structure and location in Stilton cheese
    • Ercolini D, Hill PJ, Dodd CER. 2003. Bacterial community structure and location in Stilton cheese. Appl. Environ. Microbiol. 69:3540-3548.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3540-3548
    • Ercolini, D.1    Hill, P.J.2    Dodd, C.E.R.3
  • 19
    • 34347224111 scopus 로고    scopus 로고
    • On the protection of geographical indications and designations of origin for agricultural prod-ucts and food stuffs. Commission regulation EC 510/06. Off
    • L.European Commission. 31 March
    • European Commission. 31 March 2006. On the protection of geographical indications and designations of origin for agricultural prod-ucts and food stuffs. Commission regulation EC 510/06. Off. J. Eur. Union L93:12-25.
    • (2006) J. Eur. Union , vol.93 , pp. 12-25
  • 20
    • 33745833650 scopus 로고    scopus 로고
    • Microbial diversity and succession during the manufacture and ripening of traditional, Spanish, blue-veined Cabrales cheese, as determined by PCR-DGGE
    • Flórez AB, Mayo B. 2006. Microbial diversity and succession during the manufacture and ripening of traditional, Spanish, blue-veined Cabrales cheese, as determined by PCR-DGGE. Int. J. Food Microbiol. 110:165-171.
    • (2006) Int. J. Food Microbiol. , vol.110 , pp. 165-171
    • Flórez, A.B.1    Mayo, B.2
  • 21
    • 33745161045 scopus 로고    scopus 로고
    • Improved enumeration of lactic acid bacteria in mesophilic starter cultures by using multiplex quantitative real-time PCR and flow cytometry-fluorescence in situ hybridization
    • Friedrich U, Lenke J. 2006. Improved enumeration of lactic acid bacteria in mesophilic starter cultures by using multiplex quantitative real-time PCR and flow cytometry-fluorescence in situ hybridization. Appl. Environ. Microbiol. 72:4163-4171.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4163-4171
    • Friedrich, U.1    Lenke, J.2
  • 22
    • 20444503846 scopus 로고    scopus 로고
    • Microbial solutions to microbial problems; lactococcal bacteriocins for the control of undesirable biota in food
    • Guinane CM, Cotter PD, Hill C, Ross RP. 2005. Microbial solutions to microbial problems; lactococcal bacteriocins for the control of undesirable biota in food. J. Appl. Microbiol. 98:1316-1325.
    • (2005) J. Appl. Microbiol. , vol.98 , pp. 1316-1325
    • Guinane, C.M.1    Cotter, P.D.2    Hill, C.3    Ross, R.P.4
  • 23
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • doi:10.1101/gr.112730.110
    • Haas BJ, et al. 2011. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res. 21: 494-504. doi:10.1101/gr.112730.110.
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1
  • 24
    • 67649624739 scopus 로고    scopus 로고
    • Pyrosequencing of tagged 16S rRNA gene amplicons for rapid deciphering of the microbiomes of fermented foods such as pearl millet slurries
    • Humblot C, Guyot JP. 2009. Pyrosequencing of tagged 16S rRNA gene amplicons for rapid deciphering of the microbiomes of fermented foods such as pearl millet slurries. Appl. Environ. Microbiol. 75:4354-4361.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4354-4361
    • Humblot, C.1    Guyot, J.P.2
  • 25
    • 49449084992 scopus 로고    scopus 로고
    • Culture-independent methods for identifying microbial communities in cheese
    • Jany JL, Barbier G. 2008. Culture-independent methods for identifying microbial communities in cheese. Food Microbiol. 25:839-848.
    • (2008) Food Microbiol , vol.25 , pp. 839-848
    • Jany, J.L.1    Barbier, G.2
  • 26
    • 79953291919 scopus 로고    scopus 로고
    • Metagenomic analysis of kimchi, a traditional Korean fermented food
    • Jung JY, et al. 2011. Metagenomic analysis of kimchi, a traditional Korean fermented food. Appl. Environ. Microbiol. 77:2264-2274.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 2264-2274
    • Jung, J.Y.1
  • 28
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, Goodfellow M (ed)
    • Lane DJ. 1991. 16S/23S rRNA sequencing, p 115-148. In Stackebrandt E, Goodfellow M (ed), Nucleic acid techniques in bacterial systematics, 1st ed. John Wiley & Sons, Chichester, United Kingdom.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-148
    • Lane, D.J.1
  • 29
    • 1542299660 scopus 로고    scopus 로고
    • Evaluation of bacterial communities belonging to natural whey starters for Grana Padano cheese by length heterogeneity-PCR
    • Lazzi C, Rossetti L, Zago M, Neviani E, Giraffa G. 2004. Evaluation of bacterial communities belonging to natural whey starters for Grana Padano cheese by length heterogeneity-PCR. J. Appl. Microbiol. 96:481-490.
    • (2004) J. Appl. Microbiol. , vol.96 , pp. 481-490
    • Lazzi, C.1    Rossetti, L.2    Zago, M.3    Neviani, E.4    Giraffa, G.5
  • 30
    • 33947269742 scopus 로고    scopus 로고
    • Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities
    • doi:10.1128/AEM.01996-06
    • Lozupone CA, Hamady M, Kelley ST, Knight R. 2007. Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities. Appl. Environ. Microbiol. 73:1576-1585. doi:10.1128/AEM.01996-06.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1576-1585
    • Lozupone, C.A.1    Hamady, M.2    Kelley, S.T.3    Knight, R.4
  • 31
    • 0042665849 scopus 로고    scopus 로고
    • Characterization of proficient wild Lactococcus lactis strains resistant to phage infection
    • Madera C, García P, Janzen T, Rodríguez A, Suárez JE. 2003. Characterization of proficient wild Lactococcus lactis strains resistant to phage infection. Int. J. Food Microbiol. 86:213-222.
    • (2003) Int. J. Food Microbiol. , vol.86 , pp. 213-222
    • Madera, C.1    García, P.2    Janzen, T.3    Rodríguez, A.4    Suárez, J.E.5
  • 32
    • 79955508188 scopus 로고    scopus 로고
    • Changes in volatile, sensory and microbial profiles during preparation of smoked ewe cheese
    • Majcher MA, Goderska K, Pikul J, Jeleń HH. 2011. Changes in volatile, sensory and microbial profiles during preparation of smoked ewe cheese. J. Sci. Food Agric. 91:1416-1423.
    • (2011) J. Sci. Food Agric. , vol.91 , pp. 1416-1423
    • Majcher, M.A.1    Goderska, K.2    Pikul, J.3    Jeleń, H.H.4
  • 33
    • 79955687928 scopus 로고    scopus 로고
    • Key odorants of Oscypek, a traditional Polish ewe's milk cheese
    • Majcher MA, Jeleń HH. 2011. Key odorants of Oscypek, a traditional Polish ewe's milk cheese. J. Agric. Food Chem. 59:4932-4937.
    • (2011) J. Agric. Food Chem. , vol.59 , pp. 4932-4937
    • Majcher, M.A.1    Jeleń, H.H.2
  • 34
    • 0038154325 scopus 로고    scopus 로고
    • Temporal stability and biodiversity of two complex antilisterial cheese-ripening microbial consortia
    • Maoz A, Mayr R, Scherer S. 2003. Temporal stability and biodiversity of two complex antilisterial cheese-ripening microbial consortia. Appl. Environ. Microbiol. 69:4012-4018.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4012-4018
    • Maoz, A.1    Mayr, R.2    Scherer, S.3
  • 35
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated highdensity picolitre reactors
    • Margulies M, et al. 2005. Genome sequencing in microfabricated highdensity picolitre reactors. Nature 437:376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 36
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 37
    • 32944481454 scopus 로고    scopus 로고
    • Study of the heterogeneity of 16S rRNA genes in gamma-proteobacteria: implications for phylogenetic analysis
    • Olivier A, Lee HY, Côté JC. 2005. Study of the heterogeneity of 16S rRNA genes in gamma-proteobacteria: implications for phylogenetic analysis. J. Gen. Appl. Microbiol. 51:395-405.
    • (2005) J. Gen. Appl. Microbiol. , vol.51 , pp. 395-405
    • Olivier, A.1    Lee, H.Y.2    Côté, J.C.3
  • 38
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data
    • Palys T, Nakamura LK, Cohan FM. 1997. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47:1145-1156.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 40
    • 0036211215 scopus 로고    scopus 로고
    • Diversity, dynamics, and activity of bacterial communities during production of an artisanal Sicilian cheese as evaluated by 16S rRNA analysis
    • Randazzo CL, Torriani S, Akkermans ALD, de Vos WM, Vaughan EE. 2002. Diversity, dynamics, and activity of bacterial communities during production of an artisanal Sicilian cheese as evaluated by 16S rRNA analysis. Appl. Environ. Microbiol. 68:1882-1892.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1882-1892
    • Randazzo, C.L.1    Torriani, S.2    Akkermans, A.L.D.3    de Vos, W.M.4    Vaughan, E.E.5
  • 41
    • 73449146256 scopus 로고    scopus 로고
    • Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
    • Roh SW, et al. 2010. Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J. 4:1-16.
    • (2010) ISME J , vol.4 , pp. 1-16
    • Roh, S.W.1
  • 42
    • 0034695194 scopus 로고    scopus 로고
    • Listeria monocytogenes in the smoked salmon industry
    • Rorvik LM. 2000. Listeria monocytogenes in the smoked salmon industry. Int. J. Food Microbiol. 62:183-190.
    • (2000) Int. J. Food Microbiol. , vol.62 , pp. 183-190
    • Rorvik, L.M.1
  • 43
    • 0345293356 scopus 로고    scopus 로고
    • Molecular approaches for the detection and identification of bifidobacteria and lactobacilli in the human gastrointestinal tract
    • Satokari RM, et al. 2003. Molecular approaches for the detection and identification of bifidobacteria and lactobacilli in the human gastrointestinal tract. Syst. Appl. Microbiol. 26:572-584.
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 572-584
    • Satokari, R.M.1
  • 44
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platformindependent, community-supported software for describing and comparing microbial communities
    • doi: 10.1128/AEM.01541-09
    • Schloss PD, et al. 2009. Introducing mothur: open-source, platformindependent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541. doi: 10.1128/AEM.01541-09.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 46
    • 23944493804 scopus 로고    scopus 로고
    • Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products
    • Smit G, Smit BA, Engels WJ. 2005. Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products. FEMS Microbiol. Rev. 29:591-610.
    • (2005) FEMS Microbiol. Rev. , vol.29 , pp. 591-610
    • Smit, G.1    Smit, B.A.2    Engels, W.J.3
  • 47
    • 0028028182 scopus 로고
    • Taxonomic note: a place for DNADNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E, Goebel BM. 1994. Taxonomic note: a place for DNADNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 48
    • 39149102449 scopus 로고    scopus 로고
    • Bacterial flora typing with deep, targeted, chipbased pyrosequencing
    • Sundquist A, et al. 2007. Bacterial flora typing with deep, targeted, chipbased pyrosequencing. BMC Microbiol. 7:108.
    • (2007) BMC Microbiol , vol.7 , pp. 108
    • Sundquist, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.