PHYLOSCANNER: Inferring transmission from within- and between-host pathogen genetic diversity

Molecular Biology and Evolution

Volumn 35, Issue 3, 2018, Pages 719-733

  Wymant, Chris ^a,b   Hall, Matthew ^a,b   Ratmann, Oliver ^b   Bonsall, David ^a   Golubchik, Tanya ^a   De Cesare, Mariateresa ^a   Gall, Astrid ^c   Cornelissen, Marion ^d   Fraser, Christophe ^a,b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b IMPERIAL COLLEGE LONDON   (United Kingdom)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d ACADEMIC MEDICAL CENTER   (Netherlands)

Author keywords

Molecular epidemiology; Multiple infection; Pathogen diversity; Pathogen genomics; Pathogen transmission; Phylogenetics

Indexed keywords

VIRUS RNA;

ARTICLE; CONTAMINATION; GENETIC VARIABILITY; HEPATITIS C VIRUS; HOST; HOST PATHOGEN INTERACTION; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; MIXED INFECTION; NONHUMAN; PHYLOGENETIC TREE; SOFTWARE; STREPTOCOCCUS PNEUMONIAE; VIRUS TRANSMISSION;

EID: 85051984104     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msx304     Document Type: Article

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