-
1
-
-
23744460935
-
Living in a fungal world: impact of fungi on soil bacterial niche development
-
PID: 16102603
-
Boer, W., Folman, L. B., Summerbell, R. C. & Boddy, L. Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev. 29, 795–811 (2005).
-
(2005)
FEMS Microbiol Rev.
, vol.29
, pp. 795-811
-
-
Boer, W.1
Folman, L.B.2
Summerbell, R.C.3
Boddy, L.4
-
2
-
-
77951109198
-
Medically important bacterial–fungal interactions
-
PID: 20348933
-
Peleg, A. Y., Hogan, D. A. & Mylonakis, E. Medically important bacterial–fungal interactions. Nat. Rev. Microbiol. 8, 340–349 (2010).
-
(2010)
Nat. Rev. Microbiol
, vol.8
, pp. 340-349
-
-
Peleg, A.Y.1
Hogan, D.A.2
Mylonakis, E.3
-
3
-
-
84929314375
-
Secretion systems in Gram-negative bacteria: structural and mechanistic insights
-
PID: 25978706
-
Costa, T. R. et al. Secretion systems in Gram-negative bacteria: structural and mechanistic insights. Nat. Rev. Microbiol. 13, 343–359 (2015).
-
(2015)
Nat. Rev. Microbiol
, vol.13
, pp. 343-359
-
-
Costa, T.R.1
-
4
-
-
84941710294
-
Type VI secretion system: secretion by a contractile nanomachine
-
Basler, M. Type VI secretion system: secretion by a contractile nanomachine. Phil. Trans. R. Soc. Lond. B 370, 20150021 (2015).
-
(2015)
Phil. Trans. R. Soc. Lond. B
, vol.370
, pp. 20150021
-
-
Basler, M.1
-
5
-
-
84955388560
-
Aim, load, fire: the type VI secretion system, a bacterial nanoweapon
-
PID: 26549582
-
Cianfanelli, F. R., Monlezun, L. & Coulthurst, S. J. Aim, load, fire: the type VI secretion system, a bacterial nanoweapon. Trends Microbiol. 24, 51–62 (2016).
-
(2016)
Trends Microbiol
, vol.24
, pp. 51-62
-
-
Cianfanelli, F.R.1
Monlezun, L.2
Coulthurst, S.J.3
-
6
-
-
84906934947
-
VgrG, Tae, Tle, and beyond: the versatile arsenal of type VI secretion effectors
-
PID: 25042941
-
Durand, E., Cambillau, C., Cascales, E. & Journet, L. VgrG, Tae, Tle, and beyond: the versatile arsenal of type VI secretion effectors. Trends Microbiol. 22, 498–507 (2014).
-
(2014)
Trends Microbiol
, vol.22
, pp. 498-507
-
-
Durand, E.1
Cambillau, C.2
Cascales, E.3
Journet, L.4
-
7
-
-
84951128081
-
Type VI secretion and anti-host effectors
-
PID: 26722980
-
Hachani, A., Wood, T. E. & Filloux, A. Type VI secretion and anti-host effectors. Curr. Opin. Microbiol. 29, 81–93 (2016).
-
(2016)
Curr. Opin. Microbiol
, vol.29
, pp. 81-93
-
-
Hachani, A.1
Wood, T.E.2
Filloux, A.3
-
8
-
-
84947914935
-
Molecular weaponry: diverse effectors delivered by the type VI secretion system
-
PID: 26432982
-
Alcoforado Diniz, J., Liu, Y. C. & Coulthurst, S. J. Molecular weaponry: diverse effectors delivered by the type VI secretion system. Cell Microbiol. 17, 1742–1751 (2015).
-
(2015)
Cell Microbiol.
, vol.17
, pp. 1742-1751
-
-
Alcoforado Diniz, J.1
Liu, Y.C.2
Coulthurst, S.J.3
-
9
-
-
84892670882
-
Type VI secretion system effectors: poisons with a purpose
-
PID: 24384601
-
Russell, A. B., Peterson, S. B. & Mougous, J. D. Type VI secretion system effectors: poisons with a purpose. Nat. Rev. Microbiol. 12, 137–148 (2014).
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 137-148
-
-
Russell, A.B.1
Peterson, S.B.2
Mougous, J.D.3
-
10
-
-
80055042052
-
The opportunistic pathogen Serratia marcescens utilizes type VI secretion to target bacterial competitors
-
PID: 21890705
-
Murdoch, S. L. et al. The opportunistic pathogen Serratia marcescens utilizes type VI secretion to target bacterial competitors. J. Bacteriol. 193, 6057–6069 (2011).
-
(2011)
J. Bacteriol.
, vol.193
, pp. 6057-6069
-
-
Murdoch, S.L.1
-
11
-
-
84891610562
-
Cell wall-related bionumbers and bioestimates of Saccharomyces cerevisiae and Candida albicans
-
PID: 24243791
-
Klis, F. M., de Koster, C. G. & Brul, S. Cell wall-related bionumbers and bioestimates of Saccharomyces cerevisiae and Candida albicans. Eukaryot. Cell 13, 2–9 (2014).
-
(2014)
Eukaryot. Cell
, vol.13
, pp. 2-9
-
-
Klis, F.M.1
de Koster, C.G.2
Brul, S.3
-
12
-
-
84883619568
-
Proteomic identification of novel secreted antibacterial toxins of the Serratia marcescens type VI secretion system
-
Fritsch, M. J. et al. Proteomic identification of novel secreted antibacterial toxins of the Serratia marcescens type VI secretion system. Mol. Cell Proteom. 12, 2735–2749 (2013).
-
(2013)
Mol. Cell Proteom.
, vol.12
, pp. 2735-2749
-
-
Fritsch, M.J.1
-
13
-
-
84855656898
-
Polymicrobial interactions: impact on pathogenesis and human disease
-
PID: 22232376
-
Peters, B. M., Jabra-Rizk, M. A., O’May, G. A., Costerton, J. W. & Shirtliff, M. E. Polymicrobial interactions: impact on pathogenesis and human disease. Clin. Microbiol. Rev. 25, 193–213 (2012).
-
(2012)
Clin. Microbiol. Rev.
, vol.25
, pp. 193-213
-
-
Peters, B.M.1
Jabra-Rizk, M.A.2
O’May, G.A.3
Costerton, J.W.4
Shirtliff, M.E.5
-
15
-
-
84978923181
-
VgrG and PAAR proteins define distinct versions of a functional type VI secretion system
-
PID: 27352036
-
Cianfanelli, F. R. et al. VgrG and PAAR proteins define distinct versions of a functional type VI secretion system. PLoS Pathog. 12, e1005735 (2016).
-
(2016)
PLoS Pathog.
, vol.12
-
-
Cianfanelli, F.R.1
-
16
-
-
84871786739
-
New secreted toxins and immunity proteins encoded within the type VI secretion system gene cluster of Serratia marcescens
-
PID: 22957938
-
English, G. et al. New secreted toxins and immunity proteins encoded within the type VI secretion system gene cluster of Serratia marcescens. Mol. Microbiol. 86, 921–936 (2012).
-
(2012)
Mol. Microbiol
, vol.86
, pp. 921-936
-
-
English, G.1
-
17
-
-
23844485512
-
Tetracycline-inducible gene expression and gene deletion in Candida albicans
-
PID: 16087738
-
Park, Y. N. & Morschhauser, J. Tetracycline-inducible gene expression and gene deletion in Candida albicans. Eukaryot. Cell 4, 1328–1342 (2005).
-
(2005)
Eukaryot. Cell
, vol.4
, pp. 1328-1342
-
-
Park, Y.N.1
Morschhauser, J.2
-
18
-
-
0030788865
-
Development of the FUN-1 family of fluorescent probes for vacuole labeling and viability testing of yeasts
-
PID: 9212436
-
Millard, P. J., Roth, B. L., Thi, H. P., Yue, S. T. & Haugland, R. P. Development of the FUN-1 family of fluorescent probes for vacuole labeling and viability testing of yeasts. Appl. Environ. Microbiol. 63, 2897–2905 (1997).
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 2897-2905
-
-
Millard, P.J.1
Roth, B.L.2
Thi, H.P.3
Yue, S.T.4
Haugland, R.P.5
-
19
-
-
67650127112
-
Assessment of FUN-1 vital dye staining: yeast with a block in the vacuolar sorting pathway have impaired ability to form CIVS when stained with FUN-1 fluorescent dye
-
PID: 19501122
-
Essary, B. D. & Marshall, P. A. Assessment of FUN-1 vital dye staining: yeast with a block in the vacuolar sorting pathway have impaired ability to form CIVS when stained with FUN-1 fluorescent dye. J. Microbiol Methods 78, 208–212 (2009).
-
(2009)
J. Microbiol Methods
, vol.78
, pp. 208-212
-
-
Essary, B.D.1
Marshall, P.A.2
-
20
-
-
0037150709
-
Pseudomonas–Candida interactions: an ecological role for virulence factors
-
PID: 12077418
-
Hogan, D. A. & Kolter, R. Pseudomonas–Candida interactions: an ecological role for virulence factors. Science 296, 2229–2232 (2002).
-
(2002)
Science
, vol.296
, pp. 2229-2232
-
-
Hogan, D.A.1
Kolter, R.2
-
21
-
-
0030824249
-
Control of filament formation in Candida albicans by the transcriptional repressor TUP1
-
PID: 9204892
-
Braun, B. R. & Johnson, A. D. Control of filament formation in Candida albicans by the transcriptional repressor TUP1. Science 277, 105–109 (1997).
-
(1997)
Science
, vol.277
, pp. 105-109
-
-
Braun, B.R.1
Johnson, A.D.2
-
22
-
-
0030845895
-
Molecular genetics of sulfur assimilation in filamentous fungi and yeast
-
PID: 9343344
-
Marzluf, G. A. Molecular genetics of sulfur assimilation in filamentous fungi and yeast. Annu Rev. Microbiol. 51, 73–96 (1997).
-
(1997)
Annu Rev. Microbiol
, vol.51
, pp. 73-96
-
-
Marzluf, G.A.1
-
23
-
-
85041507184
-
Characterization of the Candida albicans amino acid permease family: Gap2 is the only general amino acid permease and Gap4 is an S-adenosylmethionine (SAM) transporter required for SAM-induced morphogenesis
-
Kraidlova, L. et al. Characterization of the Candida albicans amino acid permease family: Gap2 is the only general amino acid permease and Gap4 is an S-adenosylmethionine (SAM) transporter required for SAM-induced morphogenesis. mSphere 1, 00284-16 (2016).
-
(2016)
mSphere
, vol.1
, pp. 16-00284
-
-
Kraidlova, L.1
-
24
-
-
0028556749
-
CAN1, a gene encoding a permease for basic amino acids in Candida albicans
-
PID: 7725800
-
Sychrova, H. & Souciet, J. L. CAN1, a gene encoding a permease for basic amino acids in Candida albicans. Yeast 10, 1647–1651 (1994).
-
(1994)
Yeast
, vol.10
, pp. 1647-1651
-
-
Sychrova, H.1
Souciet, J.L.2
-
25
-
-
0030959216
-
Biogenesis of Candida albicans Can1 permease expressed in Saccharomyces cerevisiae
-
PID: 9180275
-
Matijekova, A. & Sychrova, H. Biogenesis of Candida albicans Can1 permease expressed in Saccharomyces cerevisiae. FEBS Lett. 408, 89–93 (1997).
-
(1997)
FEBS Lett.
, vol.408
, pp. 89-93
-
-
Matijekova, A.1
Sychrova, H.2
-
26
-
-
84858183302
-
Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae
-
PID: 22419079
-
Ljungdahl, P. O. & Daignan-Fornier, B. Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae. Genetics 190, 885–929 (2012).
-
(2012)
Genetics
, vol.190
, pp. 885-929
-
-
Ljungdahl, P.O.1
Daignan-Fornier, B.2
-
27
-
-
59749083485
-
Amino-acid-induced signalling via the SPS-sensing pathway in yeast
-
PID: 19143640
-
Ljungdahl, P. O. Amino-acid-induced signalling via the SPS-sensing pathway in yeast. Biochem Soc. Trans. 37, 242–247 (2009).
-
(2009)
Biochem Soc. Trans.
, vol.37
, pp. 242-247
-
-
Ljungdahl, P.O.1
-
28
-
-
1242277768
-
Candida albicans Csy1p is a nutrient sensor important for activation of amino acid uptake and hyphal morphogenesis
-
PID: 14871944
-
Brega, E., Zufferey, R. & Mamoun, C. B. Candida albicans Csy1p is a nutrient sensor important for activation of amino acid uptake and hyphal morphogenesis. Eukaryot. Cell 3, 135–143 (2004).
-
(2004)
Eukaryot. Cell
, vol.3
, pp. 135-143
-
-
Brega, E.1
Zufferey, R.2
Mamoun, C.B.3
-
29
-
-
0031963197
-
The permease homologue Ssy1p controls the expression of amino acid and peptide transporter genes in Saccharomyces cerevisiae
-
PID: 9489675
-
Didion, T., Regenberg, B., Jorgensen, M. U., Kielland-Brandt, M. C. & Andersen, H. A. The permease homologue Ssy1p controls the expression of amino acid and peptide transporter genes in Saccharomyces cerevisiae. Mol. Microbiol. 27, 643–650 (1998).
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 643-650
-
-
Didion, T.1
Regenberg, B.2
Jorgensen, M.U.3
Kielland-Brandt, M.C.4
Andersen, H.A.5
-
30
-
-
0032962927
-
Amino acid signaling in Saccharomyces cerevisiae: a permease-like sensor of external amino acids and F-Box protein Grr1p are required for transcriptional induction of the AGP1 gene, which encodes a broad-specificity amino acid permease
-
PID: 9891035
-
Iraqui, I. et al. Amino acid signaling in Saccharomyces cerevisiae: a permease-like sensor of external amino acids and F-Box protein Grr1p are required for transcriptional induction of the AGP1 gene, which encodes a broad-specificity amino acid permease. Mol. Cell Biol. 19, 989–1001 (1999).
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 989-1001
-
-
Iraqui, I.1
-
31
-
-
0032778041
-
Ssy1p and Ptr3p are plasma membrane components of a yeast system that senses extracellular amino acids
-
PID: 10409731
-
Klasson, H., Fink, G. R. & Ljungdahl, P. O. Ssy1p and Ptr3p are plasma membrane components of a yeast system that senses extracellular amino acids. Mol. Cell Biol. 19, 5405–5416 (1999).
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 5405-5416
-
-
Klasson, H.1
Fink, G.R.2
Ljungdahl, P.O.3
-
32
-
-
0037107425
-
Gcn4 co-ordinates morphogenetic and metabolic responses to amino acid starvation in Candida albicans
-
PID: 12374745
-
Tripathi, G. et al. Gcn4 co-ordinates morphogenetic and metabolic responses to amino acid starvation in Candida albicans. EMBO J. 21, 5448–5456 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 5448-5456
-
-
Tripathi, G.1
-
33
-
-
0023901907
-
Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae
-
PID: 3045517
-
Hinnebusch, A. G. Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae. Microbiol Rev. 52, 248–273 (1988).
-
(1988)
Microbiol Rev.
, vol.52
, pp. 248-273
-
-
Hinnebusch, A.G.1
-
34
-
-
84878562770
-
Autophagic processes in yeast: mechanism, machinery and regulation
-
PID: 23733851
-
Reggiori, F. & Klionsky, D. J. Autophagic processes in yeast: mechanism, machinery and regulation. Genetics 194, 341–361 (2013).
-
(2013)
Genetics
, vol.194
, pp. 341-361
-
-
Reggiori, F.1
Klionsky, D.J.2
-
35
-
-
0035661648
-
Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris
-
PID: 11739783
-
Guan, J. et al. Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris. Mol. Biol. Cell 12, 3821–3838 (2001).
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 3821-3838
-
-
Guan, J.1
-
36
-
-
84924404047
-
The yeast Saccharomyces cerevisiae: an overview of methods to study autophagy progression
-
PID: 25526918
-
Delorme-Axford, E., Guimaraes, R. S., Reggiori, F. & Klionsky, D. J. The yeast Saccharomyces cerevisiae: an overview of methods to study autophagy progression. Methods 75, 3–12 (2015).
-
(2015)
Methods
, vol.75
, pp. 3-12
-
-
Delorme-Axford, E.1
Guimaraes, R.S.2
Reggiori, F.3
Klionsky, D.J.4
-
37
-
-
69349096593
-
Regulation of autophagy in yeast Saccharomyces cerevisiae
-
PID: 19344676
-
Cebollero, E. & Reggiori, F. Regulation of autophagy in yeast Saccharomyces cerevisiae. Biochim Biophys. Acta 1793, 1413–1421 (2009).
-
(2009)
Biochim Biophys. Acta
, vol.1793
, pp. 1413-1421
-
-
Cebollero, E.1
Reggiori, F.2
-
38
-
-
0141814620
-
Phagocytosis by neutrophils induces an amino acid deprivation response in Saccharomyces cerevisiae and Candida albicans
-
PID: 12958213
-
Rubin-Bejerano, I., Fraser, I., Grisafi, P. & Fink, G. R. Phagocytosis by neutrophils induces an amino acid deprivation response in Saccharomyces cerevisiae and Candida albicans. Proc. Natl Acad. Sci. USA 100, 11007–11012 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11007-11012
-
-
Rubin-Bejerano, I.1
Fraser, I.2
Grisafi, P.3
Fink, G.R.4
-
39
-
-
17144368786
-
Granulocytes govern the transcriptional response, morphology and proliferation of Candida albicans in human blood
-
PID: 15813733
-
Fradin, C. et al. Granulocytes govern the transcriptional response, morphology and proliferation of Candida albicans in human blood. Mol. Microbiol. 56, 397–415 (2005).
-
(2005)
Mol. Microbiol
, vol.56
, pp. 397-415
-
-
Fradin, C.1
-
40
-
-
6344285788
-
Transcriptional response of Candida albicans upon internalization by macrophages
-
PID: 15470236
-
Lorenz, M. C., Bender, J. A. & Fink, G. R. Transcriptional response of Candida albicans upon internalization by macrophages. Eukaryot. Cell 3, 1076–1087 (2004).
-
(2004)
Eukaryot. Cell
, vol.3
, pp. 1076-1087
-
-
Lorenz, M.C.1
Bender, J.A.2
Fink, G.R.3
-
41
-
-
84871983136
-
Candida albicans induces arginine biosynthetic genes in response to host-derived reactive oxygen species
-
PID: 23143683
-
Jimenez-Lopez, C. et al. Candida albicans induces arginine biosynthetic genes in response to host-derived reactive oxygen species. Eukaryot. Cell 12, 91–100 (2013).
-
(2013)
Eukaryot. Cell
, vol.12
, pp. 91-100
-
-
Jimenez-Lopez, C.1
-
42
-
-
84858002430
-
Type VI secretion requires a dynamic contractile phage tail-like structure
-
PID: 22367545
-
Basler, M., Pilhofer, M., Henderson, G. P., Jensen, G. J. & Mekalanos, J. J. Type VI secretion requires a dynamic contractile phage tail-like structure. Nature 483, 182–186 (2012).
-
(2012)
Nature
, vol.483
, pp. 182-186
-
-
Basler, M.1
Pilhofer, M.2
Henderson, G.P.3
Jensen, G.J.4
Mekalanos, J.J.5
-
43
-
-
77957322373
-
Measuring cell wall thickness in living yeast cells using single molecular rulers
-
PID: 20804167
-
Dupres, V., Dufrene, Y. F. & Heinisch, J. J. Measuring cell wall thickness in living yeast cells using single molecular rulers. ACS Nano 4, 5498–5504 (2010).
-
(2010)
ACS Nano
, vol.4
, pp. 5498-5504
-
-
Dupres, V.1
Dufrene, Y.F.2
Heinisch, J.J.3
-
44
-
-
80054679190
-
Structome of Saccharomyces cerevisiae determined by freeze-substitution and serial ultrathin-sectioning electron microscopy
-
Yamaguchi, M. et al. Structome of Saccharomyces cerevisiae determined by freeze-substitution and serial ultrathin-sectioning electron microscopy. J. Electron Microsc. (Tokyo) 60, 321–335 (2011).
-
(2011)
J. Electron Microsc. (Tokyo)
, vol.60
, pp. 321-335
-
-
Yamaguchi, M.1
-
45
-
-
84994442786
-
Bacteriome and mycobiome interactions underscore microbial dysbiosis in familial Crohn’s disease
-
PID: 27651359
-
Hoarau, G. et al. Bacteriome and mycobiome interactions underscore microbial dysbiosis in familial Crohn’s disease. mBio 7, e01250-16 (2016).
-
(2016)
mBio
, vol.7
-
-
Hoarau, G.1
-
46
-
-
80053587345
-
Serratia infections: from military experiments to current practice
-
PID: 21976608
-
Mahlen, S. D. Serratia infections: from military experiments to current practice. Clin. Microbiol. Rev. 24, 755–791 (2011).
-
(2011)
Clin. Microbiol. Rev.
, vol.24
, pp. 755-791
-
-
Mahlen, S.D.1
-
47
-
-
84866386269
-
Hcp2, a secreted protein of the phytopathogen Pseudomonas syringae pv. tomato DC3000, is required for fitness for competition against bacteria and yeasts
-
PID: 22753062
-
Haapalainen, M. et al. Hcp2, a secreted protein of the phytopathogen Pseudomonas syringae pv. tomato DC3000, is required for fitness for competition against bacteria and yeasts. J. Bacteriol. 194, 4810–4822 (2012).
-
(2012)
J. Bacteriol.
, vol.194
, pp. 4810-4822
-
-
Haapalainen, M.1
-
48
-
-
0003559611
-
-
Cold Spring Harbor Laboratory Press, New York
-
Amberg, D. C., Burke, D., Strathern, J. N. & Burke, D. Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual (Cold Spring Harbor Laboratory Press, New York, 2005).
-
(2005)
Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual
-
-
Amberg, D.C.1
Burke, D.2
Strathern, J.N.3
Burke, D.4
-
49
-
-
84863393849
-
OMERO: flexible, model-driven data management for experimental biology
-
PID: 22373911
-
Allan, C. et al. OMERO: flexible, model-driven data management for experimental biology. Nat. Methods 9, 245–253 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 245-253
-
-
Allan, C.1
-
50
-
-
84862520770
-
Fiji: an open-source platform for biological-image analysis
-
PID: 22743772
-
Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676–682 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
-
51
-
-
84994541713
-
Analysis of antimicrobial-triggered membrane depolarization using voltage sensitive dyes
-
PID: 27148531
-
te Winkel, J. D. et al. Analysis of antimicrobial-triggered membrane depolarization using voltage sensitive dyes. Front. Cell Dev. Biol. 4, 29 (2016).
-
(2016)
Front. Cell Dev. Biol.
, vol.4
, pp. 29
-
-
te Winkel, J.D.1
-
52
-
-
0032775010
-
Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines
-
PID: 10407276
-
Knop, M. et al. Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines. Yeast 15, 963–972 (1999).
-
(1999)
Yeast
, vol.15
, pp. 963-972
-
-
Knop, M.1
-
53
-
-
84896908524
-
Detection of Saccharomyces cerevisiae Atg13 by western blot
-
PID: 24430166
-
Miller-Fleming, L., Cheong, H., Antas, P. & Klionsky, D. J. Detection of Saccharomyces cerevisiae Atg13 by western blot. Autophagy 10, 514–517 (2014).
-
(2014)
Autophagy
, vol.10
, pp. 514-517
-
-
Miller-Fleming, L.1
Cheong, H.2
Antas, P.3
Klionsky, D.J.4
-
54
-
-
0344091555
-
Virulence factors of the human opportunistic pathogen Serratia marcescens identified by in vivo screening
-
PID: 12660152
-
Kurz, C. L. et al. Virulence factors of the human opportunistic pathogen Serratia marcescens identified by in vivo screening. EMBO J. 22, 1451–1460 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 1451-1460
-
-
Kurz, C.L.1
-
55
-
-
33745248066
-
A generalized transducing phage (phiIF3) for the genomically sequenced Serratia marcescens strain Db11: a tool for functional genomics of an opportunistic human pathogen
-
PID: 16735733
-
Petty, N. K., Foulds, I. J., Pradel, E., Ewbank, J. J. & Salmond, G. P. A generalized transducing phage (phiIF3) for the genomically sequenced Serratia marcescens strain Db11: a tool for functional genomics of an opportunistic human pathogen. Microbiology 152, 1701–1708 (2006).
-
(2006)
Microbiology
, vol.152
, pp. 1701-1708
-
-
Petty, N.K.1
Foulds, I.J.2
Pradel, E.3
Ewbank, J.J.4
Salmond, G.P.5
-
56
-
-
84959498218
-
IFNs modify the proteome of Legionella-containing vacuoles and restrict infection via IRG1-derived itaconic acid
-
PID: 26829557
-
Naujoks, J. et al. IFNs modify the proteome of Legionella-containing vacuoles and restrict infection via IRG1-derived itaconic acid. PLoS Pathog. 12, e1005408 (2016).
-
(2016)
PLoS Pathog.
, vol.12
-
-
Naujoks, J.1
-
57
-
-
84941734215
-
High-resolution quantitative proteome analysis reveals substantial differences between phagosomes of RAW 264.7 and bone marrow derived macrophages
-
PID: 25504905
-
Guo, M. et al. High-resolution quantitative proteome analysis reveals substantial differences between phagosomes of RAW 264.7 and bone marrow derived macrophages. Proteomics 15, 3169–3174 (2015).
-
(2015)
Proteomics
, vol.15
, pp. 3169-3174
-
-
Guo, M.1
-
58
-
-
84929657496
-
Quantitative proteome analysis of temporally resolved phagosomes following uptake via key phagocytic receptors
-
Dill, B. D. et al. Quantitative proteome analysis of temporally resolved phagosomes following uptake via key phagocytic receptors. Mol. Cell. Proteom. 14, 1334–1349 (2015).
-
(2015)
Mol. Cell. Proteom.
, vol.14
, pp. 1334-1349
-
-
Dill, B.D.1
-
59
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
PID: 19029910
-
Cox, J. & Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367–1372 (2008).
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
60
-
-
84879333731
-
Hydrophilic strong anion exchange (hSAX) chromatography for highly orthogonal peptide separation of complex proteomes
-
PID: 23294059
-
Ritorto, M. S., Cook, K., Tyagi, K., Pedrioli, P. G. & Trost, M. Hydrophilic strong anion exchange (hSAX) chromatography for highly orthogonal peptide separation of complex proteomes. J. Proteome Res. 12, 2449–2457 (2013).
-
(2013)
J. Proteome Res.
, vol.12
, pp. 2449-2457
-
-
Ritorto, M.S.1
Cook, K.2
Tyagi, K.3
Pedrioli, P.G.4
Trost, M.5
-
61
-
-
84883626672
-
Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure
-
PID: 24025428
-
Muzzey, D., Schwartz, K., Weissman, J. S. & Sherlock, G. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Genome Biol. 14, R97 (2013).
-
(2013)
Genome Biol.
, vol.14
-
-
Muzzey, D.1
Schwartz, K.2
Weissman, J.S.3
Sherlock, G.4
-
62
-
-
84976274986
-
The Perseus computational platform for comprehensive analysis of (prote)omics data
-
PID: 27348712
-
Tyanova, S. et al. The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat. Methods 13, 731–740 (2016).
-
(2016)
Nat. Methods
, vol.13
, pp. 731-740
-
-
Tyanova, S.1
-
63
-
-
85016105655
-
The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data
-
PID: 27738138
-
Skrzypek, M. S. et al. The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Res. 45, D592–D596 (2017).
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D592-D596
-
-
Skrzypek, M.S.1
-
64
-
-
84976871411
-
2016 update of the PRIDE database and its related tools
-
PID: 26527722
-
Vizcaino, J. A. et al. 2016 update of the PRIDE database and its related tools. Nucleic Acids Res. 44, D447–D456 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D447-D456
-
-
Vizcaino, J.A.1
|