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Volumn 27, Issue R1, 2018, Pages R40-R47

Cell type discovery using single-cell transcriptomics: Implications for ontological representation

Author keywords

[No Author keywords available]

Indexed keywords

CELL LINEAGE; CELL STRUCTURE; CELLS; CELLULAR IMMUNITY; GENE IDENTIFICATION; HUMAN; INTERNEURON; MARKER GENE; NERVE CELL; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; RANDOM FOREST; REVIEW; RNA SEQUENCE; SINGLE CELL TRANSCRIPTOMICS; TISSUES; TRANSCRIPTOMICS; GENE EXPRESSION PROFILING; GENETICS; SEQUENCE ANALYSIS; SINGLE CELL ANALYSIS; TRENDS;

EID: 85048609035     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddy100     Document Type: Review
Times cited : (46)

References (42)
  • 2
    • 77956412152 scopus 로고    scopus 로고
    • Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis
    • Tang, F., Barbacioru, C., Bao, S., Lee, C., Nordman, E., Wang, X., Lao, K. and Surani, M.A. (2010) Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis. Cell Stem Cell, 6, 468-478
    • (2010) Cell Stem Cell , vol.6 , pp. 468-478
    • Tang, F.1    Barbacioru, C.2    Bao, S.3    Lee, C.4    Nordman, E.5    Wang, X.6    Lao, K.7    Surani, M.A.8
  • 7
    • 84953362048 scopus 로고    scopus 로고
    • Somatosensory neuron types identified by high-coverage single-cell RNA-sequencing and functional heterogeneity
    • Li, C.-L., Li, K.-C., Wu, D., Chen, Y., Luo, H., Zhao, J.-R., Wang, S.-S., Sun, M.-M., Lu, Y.-J., Zhong, Y.-Q. et al. (2015) Somatosensory neuron types identified by high-coverage single-cell RNA-sequencing and functional heterogeneity. Cell Res., 26, 83-102
    • (2015) Cell Res , vol.26 , pp. 83-102
    • Li, C.-L.1    Li, K.-C.2    Wu, D.3    Chen, Y.4    Luo, H.5    Zhao, J.-R.6    Wang, S.-S.7    Sun, M.-M.8    Lu, Y.-J.9    Zhong, Y.-Q.10
  • 15
    • 85025441550 scopus 로고    scopus 로고
    • A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA
    • Lake, B.B., Codeluppi, S., Yung, Y.C., Gao, D., Chun, J., Kharchenko, P.V., Linnarsson, S. and Zhang, K. (2017) A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA. Sci. Rep., 7, 6031
    • (2017) Sci. Rep , vol.7 , pp. 6031
    • Lake, B.B.1    Codeluppi, S.2    Yung, Y.C.3    Gao, D.4    Chun, J.5    Kharchenko, P.V.6    Linnarsson, S.7    Zhang, K.8
  • 16
    • 85059469833 scopus 로고    scopus 로고
    • Equivalent high-resolution identification of neuronal cell types with single-nucleus and single-cell RNA-sequencing
    • Preprint bioRxiv
    • Bakken, T., Hodge, R.D., Miller, J.M., Yao, Z., Nguyen, T.N., Aevermann, B., Barkan, E., Agnolli, D.B., Casper, T., Dee, N. et al. (2017) Equivalent high-resolution identification of neuronal cell types with single-nucleus and single-cell RNA-sequencing. Preprint bioRxiv, https://doi.org/10.1101/239749
    • (2017)
    • Bakken, T.1    Hodge, R.D.2    Miller, J.M.3    Yao, Z.4    Nguyen, T.N.5    Aevermann, B.6    Barkan, E.7    Agnolli, D.B.8    Casper, T.9    Dee, N.10
  • 17
    • 84998812131 scopus 로고    scopus 로고
    • Cerebral cortical neuron diversity and development at the single-cell resolution
    • Johnson, M.B. and Walsh, C.A. (2017) Cerebral cortical neuron diversity and development at the single-cell resolution. Curr. Opin. Neurobiol., 42, 9-16
    • (2017) Curr. Opin. Neurobiol , vol.42 , pp. 9-16
    • Johnson, M.B.1    Walsh, C.A.2
  • 18
    • 85027066112 scopus 로고    scopus 로고
    • Transcriptomic perspectives on neocortical structure, development, evolution, and disease
    • Lein, E.S., Belgard, T.G., Hawrylycz, M. and Molná r, Z. (2017) Transcriptomic perspectives on neocortical structure, development, evolution, and disease. Annu. Rev. Neurosci., 40, 629-652
    • (2017) Annu. Rev. Neurosci , vol.40 , pp. 629-652
    • Lein, E.S.1    Belgard, T.G.2    Hawrylycz, M.3    Molnár, Z.4
  • 20
    • 84922321862 scopus 로고    scopus 로고
    • Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
    • Pollen, A.A., Nowakowski, T.J., Shuga, J., Wang, X., Leyrat, A.A., Lui, J.H., Li, N., Szpankowski, L., Fowler, B., Chen, P. et al. (2014) Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat. Biotechnol., 32, 1053-1058
    • (2014) Nat. Biotechnol , vol.32 , pp. 1053-1058
    • Pollen, A.A.1    Nowakowski, T.J.2    Shuga, J.3    Wang, X.4    Leyrat, A.A.5    Lui, J.H.6    Li, N.7    Szpankowski, L.8    Fowler, B.9    Chen, P.10
  • 22
    • 85030648051 scopus 로고    scopus 로고
    • Single-cell transcriptomics to explore the immune systemin health and disease
    • Stubbington, M.J.T., Rozenblatt-Rosen, O., Regev, A. and Teichmann, S.A. (2017) Single-cell transcriptomics to explore the immune systemin health and disease. Science, 358, 58-63
    • (2017) Science , vol.358 , pp. 58-63
    • Stubbington, M.J.T.1    Rozenblatt-Rosen, O.2    Regev, A.3    Teichmann, S.A.4
  • 27
  • 41
    • 85048624623 scopus 로고    scopus 로고
    • SAKE (single-cell RNA-Seq analysis and klustering evaluation) identifies markers of resistance to targeted BRAF Inhibitors In Melanoma Cell Populations
    • Ho, Y., Anaparthy, N., Molik, D., Aicher, T., Patel, A., Hicks, J. and Hammell, M.G. (2017) SAKE (single-cell RNA-Seq analysis and klustering evaluation) identifies markers of resistance to targeted BRAF Inhibitors In Melanoma Cell Populations. Preprint bioRxiv, https://doi.org/10.1101/239319
    • (2017) Preprint bioRxiv
    • Ho, Y.1    Anaparthy, N.2    Molik, D.3    Aicher, T.4    Patel, A.5    Hicks, J.6    Hammell, M.G.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.