Comment: The FAIR Guiding Principles for scientific data management and stewardship

Scientific Data

Volumn 3, Issue , 2016, Pages

  Wilkinson, Mark D ^a   Dumontier, Michel ^b   Aalbersberg, IJsbrand Jan ^c   Appleton, Gabrielle ^c   Axton, Myles ^d   Baak, Arie ^e   Blomberg, Niklas ^f   Boiten, Jan Willem ^g   da Silva Santos, Luiz Bonino ^h   Bourne, Philip E ⁱ   Bouwman, Jildau ^j   Brookes, Anthony J ^k   Clark, Tim ^l   Crosas, Mercè ^m   Dillo, Ingrid ⁿ   Dumon, Olivier ^c   Edmunds, Scott ^o   Evelo, Chris T ^p   Finkers, Richard ^q   Gonzalez Beltran, Alejandra ^r   Gray, Alasdair J G ^s   Groth, Paul ^c   Goble, Carole ^t   Grethe, Jeffrey S ^u   Heringa, Jaap ^v   t Hoen, Peter A C ^w   Hooft, Rob ^x   Kuhn, Tobias ^h   Kok, Ruben ^v   Kok, Joost ^y   Lusher, Scott J ^z   Martone, Maryann E ^aa   Mons, Albert ^e   Packer, Abel L ^ab   Persson, Bengt ^ac   Rocca Serra, Philippe ^r   Roos, Marco ^w   van Schaik, Rene ^ad   Sansone, Susanna Assunta ^r   Schultes, Erik ^w   Sengstag, Thierry ^ae   Slater, Ted ^af   Strawn, George ^ag   Swertz, Morris A ^ah   Thompson, Mark ^w   Van Der Lei, Johan ^ai   Van Mulligen, Erik ^ai   Velterop, Jan ^aj   Waagmeester, Andra ^ak   Wittenburg, Peter ^al   Wolstencroft, Katherine ^y   Zhao, Jun ^r   Mons, Barend ^w,z,ai   more..

^a UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

^b STANFORD UNIVERSITY   (United States)

^c ELSEVIER MASSON   (France)

^d Nature Genetics   (United States)

^e Euretos and Phortos Consultants   (Netherlands)

^f ELIXIR Wellcome Trust Genome Campus   (United Kingdom)

^g Lygature   (Netherlands)

^h VU UNIVERSITY AMSTERDAM   (Netherlands)

ⁱ NATIONAL INSTITUTES OF HEALTH   (United States)

^j TNO   (Netherlands)

^k UNIVERSITY OF LEICESTER   (United Kingdom)

^l HARVARD MEDICAL SCHOOL   (United States)

^m HARVARD UNIVERSITY   (United States)

ⁿ Data Archiving and Networked Services (DANS)   (Netherlands)

^o BGI SHENZHEN   (China)

^p MAASTRICHT UNIVERSITY   (Netherlands)

^q WAGENINGEN UNIVERSITY   (Netherlands)

^r UNIVERSITY OF OXFORD   (United Kingdom)

^s HERIOT WATT UNIVERSITY   (United Kingdom)

^t UNIVERSITY OF MANCHESTER   (United Kingdom)

^u UNIVERSITY OF CALIFORNIA   (United States)

^v Dutch Techcenter for the Life Sciences   (Netherlands)

^w LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

^x Dutch TechCenter for Life Sciences and ELIXIR NL   (Netherlands)

^y LEIDEN UNIVERSITY   (Netherlands)

^z NETHERLANDS ESCIENCE CENTER   (Netherlands)

^aa UNIVERSITY OF CALIFORNIA   (United States)

^ab FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^ac SCIENCE FOR LIFE LABORATORY   (Sweden)

^ad Bayer Cropscience Belgium   (Belgium)

^ae SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^af CRAY INC   (United States)

^ag Swiss Institute of Bioinformatics and University of Basel ^*

^ah UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

^ai ERASMUS MEDICAL CENTER   (Netherlands)

^aj Independent Open Access and Open Science Advocate   (United Kingdom)

^ak Micelio   (Belgium)

^al MAX PLANCK COMPUTING AND DATA FACILITY   (Germany)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE MANAGEMENT SYSTEM; INFORMATION PROCESSING; METHODOLOGY; PRACTICE GUIDELINE; REPRODUCIBILITY;

DATA COLLECTION; DATA CURATION; DATABASE MANAGEMENT SYSTEMS; GUIDELINES AS TOPIC; REPRODUCIBILITY OF RESULTS; RESEARCH DESIGN;

EID: 84962269370     PISSN: None     EISSN: 20524463     Source Type: Journal    
DOI: 10.1038/sdata.2016.18     Document Type: Article

References (32)

1. Roche, D. G., Kruuk, L. E. B., Lanfear, R. & Binning, S. A. Public Data Archiving in Ecology and Evolution: How Well Are We Doing? PLOS Biol. 13, e1002295 (2015).
2. Bechhofer, S. et al. Research Objects: Towards Exchange and Reuse of Digital Knowledge. Nat. Preced. doi:10.1038/npre.2010.4626.1 (2010).
3. Benson, D. A. et al. GenBank. Nucleic Acids Res. 41, D36-D42 (2013).
4. Berman, H., Henrick, K. & Nakamura, H. Announcing the worldwide Protein Data Bank. Nat. Struct. Biol. 10, 980-980 (2003).
5. The Uniprot Consortium. UniProt: A hub for protein information. Nucleic Acids Res. 43, D204-D212 (2015).
6. Wenger, M. et al. The SIMBAD astronomical database-The CDS reference database for astronomical objects. Astron. Astrophys. Suppl. Ser. 143, 9-22 (2000).
7. Crosas, M. "The Dataverse Network®: An Open-Source Application for Sharing, Discovering and Preserving Data". D-Lib Mag 17 (1), p2 (2011).
8. White, H. C., Carrier, S., Thompson, A., Greenberg, J. & Scherle, R. The Dryad data repository: A Singapore framework metadata architecture in a DSpace environment. Univ. Göttingen, p157 (2008).
9. Lecarpentier, D. et al. EUDAT: A New Cross-Disciplinary Data Infrastructure for Science. Int. J. Digit. Curation 8, 279-287 (2013).
10. Martone, M. E. FORCE11: Building the Future for Research Communications and e-Scholarship. Bioscience 65, 635 (2015).
11. White, E. et al. Nine simple ways to make it easier to (re)use your data. Ideas Ecol. Evol. 6 (2013).
12. Sandve, G. K., Nekrutenko, A., Taylor, J. & Hovig, E. Ten Simple Rules for Reproducible Computational Research. PLoS Comput. Biol. 9, e1003285 (2013).
13. Altman, M. & King, G. in D-Lib Magazine 13, no. 3/4 (2007).
14. Wolstencroft, K. et al. SEEK: A systems biology data and model management platform. BMC Syst. Biol. 9, 33 (2015).
15. Bauch, A. et al. openBIS: A flexible framework for managing and analyzing complex data in biology research. BMC Bioinformatics 12, 468 (2011).
16. Sansone, S.-A. et al. Toward interoperable bioscience data. Nat. Genet. 44, 121-126 (2012).
17. González-Beltrán, A., Maguire, E., Sansone, S.-A. & Rocca-Serra, P. linkedISA: semantic representation of ISA-Tab experimental metadata. BMC Bioinformatics 15, S4 (2014).
18. González-Beltrán, A. et al. From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics. PLoS ONE 10, e0127612 (2015).
19. Harland, L. Open PHACTS: A Semantic Knowledge Infrastructure for Public and Commercial Drug Discovery Research. Knowl. Eng. Knowl. Manag. Lect. Notes Comput. Sci. 7603/2012, 1-7 (2012).
20. Groth, P. et al. API-centric Linked Data integration: The Open PHACTS Discovery Platform case study. Web Semant. Sci. Serv. Agents World Wide Web 29, 12-18 (2014).
21. Berman, H. M. et al. The Protein Data Bank. Nucleic Acids Res. 28, 235-242 (2000).
22. Bourne, P. E., Berman, H. M., Watenpaugh, K., Westbrook, J. D. & Fitzgerald, P. M. D. The macromolecular crystallographic information file (mmCIF). Meth. Enzym 277, 571-590 (1997).
23. Rose, P. W. et al. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res. 43, D345-D356 (2015).
24. Kinjo, A. R. et al. Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format. Nucleic Acids Res. 40, D453-D460 (2012).
25. Gutmanas, A. et al. PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 42, D285-D291 (2014).
26. UniProt Consortium. UniProt: A hub for protein information. Nucleic Acids Res. 43, D204-D212 (2015).
27. Starr, J. et al. Achieving human and machine accessibility of cited data in scholarly publications. PeerJ Comput. Sci. 1, e1 (2015).
28. Wilkinson, M., Dumontier, M. & Durbin, P. DataFairPort: The Perl libraries version 0.231 doi:10.5281/zenodo.33584 (2015).
29. Data Citation Synthesis Group: Joint Declaration of Data Citation Principles. San Diego CA: FORCE11 [https://www.force11.org/datacitation] (2014).
30. Ohno-machado, L. et al. NIH BD2K bioCADDIE white paper-Data Discovery Index. http://dx.doi.org/10.6084/m9.figshare. 1362572 (2015).
31. NIH BD2K bioCADDIE WG3 Members. WG3-MetadataSpecifications: NIH BD2K bioCADDIE Data Discovery Index WG3 Metadata Specification v1 doi:10.5281/zenodo.28019 (2015).
32. Musen, M. A. et al. The center for expanded data annotation and retrieval. J. Am. Med. Informatics Assoc. 22, 1148-1152 (2015).