-
1
-
-
84883858159
-
Intraluminal containment of commensal outgrowth in the gut during infection-induced dysbiosis
-
M. J. Molloy, J. R. Grainger, N. Bouladoux, T. W. Hand, L. Y. Koo, S. Naik, M. Quinones, A. K. Dzutsev, J.-L. Gao, G. Trinchieri, P. M. Murphy, Y. Belkaid, Intraluminal containment of commensal outgrowth in the gut during infection-induced dysbiosis. Cell Host Microbe 14, 318-328 (2013).
-
(2013)
Cell Host Microbe
, vol.14
, pp. 318-328
-
-
Molloy, M.J.1
Grainger, J.R.2
Bouladoux, N.3
Hand, T.W.4
Koo, L.Y.5
Naik, S.6
Quinones, M.7
Dzutsev, A.K.8
Gao, J.-L.9
Trinchieri, G.10
Murphy, P.M.11
Belkaid, Y.12
-
2
-
-
77954051526
-
Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses
-
S. Hapfelmeier, M. A. E. Lawson, E. Slack, J. K. Kirundi, M. Stoel, M. Heikenwalder, J. Cahenzli, Y. Velykoredko, M. L. Balmer, K. Endt, M. B. Geuking, R. Curtiss III, K. D. McCoy, A. J. Macpherson, Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science 328, 1705-1709 (2010).
-
(2010)
Science
, vol.328
, pp. 1705-1709
-
-
Hapfelmeier, S.1
Lawson, M.A.E.2
Slack, E.3
Kirundi, J.K.4
Stoel, M.5
Heikenwalder, M.6
Cahenzli, J.7
Velykoredko, Y.8
Balmer, M.L.9
Endt, K.10
Geuking, M.B.11
Curtiss, R.12
McCoy, K.D.13
Macpherson, A.J.14
-
3
-
-
77649086402
-
Immune adaptations that maintain homeostasis with the intestinal microbiota
-
L. V. Hooper, A. J. Macpherson, Immune adaptations that maintain homeostasis with the intestinal microbiota. Nat. Rev. Immunol. 10, 159-169 (2010).
-
(2010)
Nat. Rev. Immunol.
, vol.10
, pp. 159-169
-
-
Hooper, L.V.1
Macpherson, A.J.2
-
4
-
-
1242296822
-
Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut
-
K. Suzuki, B. Meek, Y. Doi, M. Muramatsu, T. Chiba, T. Honjo, S. Fagarasan, Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut. Proc. Natl. Acad. Sci. U.S.A. 101, 1981-1986 (2004).
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 1981-1986
-
-
Suzuki, K.1
Meek, B.2
Doi, Y.3
Muramatsu, M.4
Chiba, T.5
Honjo, T.6
Fagarasan, S.7
-
5
-
-
0037112050
-
Critical roles of activation-induced cytidine deaminase in the homeostasis of gut flora
-
S. Fagarasan, M. Muramatsu, K. Suzuki, H. Nagaoka, H. Hiai, T. Honjo, Critical roles of activation-induced cytidine deaminase in the homeostasis of gut flora. Science 298, 1424-1427 (2002).
-
(2002)
Science
, vol.298
, pp. 1424-1427
-
-
Fagarasan, S.1
Muramatsu, M.2
Suzuki, K.3
Nagaoka, H.4
Hiai, H.5
Honjo, T.6
-
6
-
-
0033104726
-
Targeted deletion of the IgA constant region in mice leads to IgA deficiency with alterations in expression of other Ig isotypes
-
G. R. Harriman, M. Bogue, P. Rogers, M. Finegold, S. Pacheco, A. Bradley, Y. Zhang, I. N. Mbawuike, Targeted deletion of the IgA constant region in mice leads to IgA deficiency with alterations in expression of other Ig isotypes. J. Immunol. 162, 2521-2529 (1999).
-
(1999)
J. Immunol.
, vol.162
, pp. 2521-2529
-
-
Harriman, G.R.1
Bogue, M.2
Rogers, P.3
Finegold, M.4
Pacheco, S.5
Bradley, A.6
Zhang, Y.7
Mbawuike, I.N.8
-
7
-
-
84868101602
-
Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice
-
D. H. Reikvam, M. Derrien, R. Islam, A. Erofeev, V. Grcic, A. Sandvik, P. Gaustad, L. A. Meza-Zepeda, F. L. Jahnsen, H. Smidt, F.-E. Johansen, Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice. Eur. J. Immunol. 42, 2959-2970 (2012).
-
(2012)
Eur. J. Immunol.
, vol.42
, pp. 2959-2970
-
-
Reikvam, D.H.1
Derrien, M.2
Islam, R.3
Erofeev, A.4
Grcic, V.5
Sandvik, A.6
Gaustad, P.7
Meza-Zepeda, L.A.8
Jahnsen, F.L.9
Smidt, H.10
Johansen, F.-E.11
-
8
-
-
31344443857
-
Innate secretory antibodies protect against natural Salmonella typhimurium infection
-
O. L. C. Wijburg, T. K. Uren, K. Simpfendorfer, F.-E. Johansen, P. Brandtzaeg, R. A. Strugnell, Innate secretory antibodies protect against natural Salmonella typhimurium infection. J. Exp. Med. 203, 21-26 (2006).
-
(2006)
J. Exp. Med.
, vol.203
, pp. 21-26
-
-
Wijburg, O.L.C.1
Uren, T.K.2
Simpfendorfer, K.3
Johansen, F.-E.4
Brandtzaeg, P.5
Strugnell, R.A.6
-
9
-
-
0033566004
-
Lack of J chain inhibits the transport of gut IgA and abrogates the development of intestinal antitoxic protection
-
N. Lycke, L. Erlandsson, L. Ekman, K. Schon, T. Leanderson, Lack of J chain inhibits the transport of gut IgA and abrogates the development of intestinal antitoxic protection. J. Immunol. 163, 913-919 (1999).
-
(1999)
J. Immunol.
, vol.163
, pp. 913-919
-
-
Lycke, N.1
Erlandsson, L.2
Ekman, L.3
Schon, K.4
Leanderson, T.5
-
10
-
-
79951602552
-
Mice carrying a knock-in mutation of Aicda resulting in a defect in somatic hypermutation have impaired gut homeostasis and compromised mucosal defense
-
M. Wei, R. Shinkura, Y. Doi, M. Maruya, S. Fagarasan, T. Honjo, Mice carrying a knock-in mutation of Aicda resulting in a defect in somatic hypermutation have impaired gut homeostasis and compromised mucosal defense. Nat. Immunol. 12, 264-270 (2011).
-
(2011)
Nat. Immunol.
, vol.12
, pp. 264-270
-
-
Wei, M.1
Shinkura, R.2
Doi, Y.3
Maruya, M.4
Fagarasan, S.5
Honjo, T.6
-
11
-
-
84860123211
-
The inhibitory receptor PD-1 regulates IgA selection and bacterial composition in the gut
-
S. Kawamoto, T. H. Tran, M. Maruya, K. Suzuki, Y. Doi, Y. Tsutsui, L. M. Kato, S. Fagarasan, The inhibitory receptor PD-1 regulates IgA selection and bacterial composition in the gut. Science 336, 485-489 (2012).
-
(2012)
Science
, vol.336
, pp. 485-489
-
-
Kawamoto, S.1
Tran, T.H.2
Maruya, M.3
Suzuki, K.4
Doi, Y.5
Tsutsui, Y.6
Kato, L.M.7
Fagarasan, S.8
-
12
-
-
84904384753
-
Foxp3+ T cells regulate immunoglobulin a selection and facilitate diversification of bacterial species responsible for immune homeostasis
-
S. Kawamoto, M. Maruya, L. M. Kato, W. Suda, K. Atarashi, Y. Doi, Y. Tsutsui, H. Qin, K. Honda, T. Okada, M. Hattori, S. Fagarasan, Foxp3+ T cells regulate immunoglobulin a selection and facilitate diversification of bacterial species responsible for immune homeostasis. Immunity 41, 152-165 (2014).
-
(2014)
Immunity
, vol.41
, pp. 152-165
-
-
Kawamoto, S.1
Maruya, M.2
Kato, L.M.3
Suda, W.4
Atarashi, K.5
Doi, Y.6
Tsutsui, Y.7
Qin, H.8
Honda, K.9
Okada, T.10
Hattori, M.11
Fagarasan, S.12
-
13
-
-
84941659588
-
Innate and adaptive humoral responses coat distinct commensal bacteria with immunoglobulin A
-
J. J. Bunker, T. M. Flynn, J. C. Koval, D. G. Shaw, M. Meisel, B. D. McDonald, I. E. Ishizuka, A. L. Dent, P. C. Wilson, B. Jabri, D. A. Antonopoulos, A. Bendelac, Innate and adaptive humoral responses coat distinct commensal bacteria with immunoglobulin A. Immunity 43, 541-553 (2015).
-
(2015)
Immunity
, vol.43
, pp. 541-553
-
-
Bunker, J.J.1
Flynn, T.M.2
Koval, J.C.3
Shaw, D.G.4
Meisel, M.5
McDonald, B.D.6
Ishizuka, I.E.7
Dent, A.L.8
Wilson, P.C.9
Jabri, B.10
Antonopoulos, D.A.11
Bendelac, A.12
-
14
-
-
0016862455
-
Immune exclusion is a function of IgA
-
C. R. Stokes, J. F. Soothill, M. W. Turner, Immune exclusion is a function of IgA. Nature 255, 745-746 (1975).
-
(1975)
Nature
, vol.255
, pp. 745-746
-
-
Stokes, C.R.1
Soothill, J.F.2
Turner, M.W.3
-
15
-
-
77249139158
-
Selective IgA deficiency
-
L. Yel, Selective IgA deficiency. J. Clin. Immunol. 30, 10-16 (2010).
-
(2010)
J. Clin. Immunol.
, vol.30
, pp. 10-16
-
-
Yel, L.1
-
17
-
-
84878013905
-
Clinical symptoms in adults with selective IgA deficiency: A case-control study
-
G. H. Jorgensen, A. Gardulf, M. I. Sigurdsson, S. T. Sigurdardottir, I. Thorsteinsdottir, S. Gudmundsson, L. Hammarstrom, B. R. Ludviksson, Clinical symptoms in adults with selective IgA deficiency: A case-control study. J. Clin. Immunol. 33, 742-747 (2013).
-
(2013)
J. Clin. Immunol.
, vol.33
, pp. 742-747
-
-
Jorgensen, G.H.1
Gardulf, A.2
Sigurdsson, M.I.3
Sigurdardottir, S.T.4
Thorsteinsdottir, I.5
Gudmundsson, S.6
Hammarstrom, L.7
Ludviksson, B.R.8
-
18
-
-
0029902596
-
Long-term follow-up of health in blood donors with primary selective IgA deficiency
-
S. Koskinen, Long-term follow-up of health in blood donors with primary selective IgA deficiency. J. Clin. Immunol. 16, 165-170 (1996).
-
(1996)
J. Clin. Immunol.
, vol.16
, pp. 165-170
-
-
Koskinen, S.1
-
19
-
-
59449092473
-
IgA deficiency: Correlation between clinical and immunological phenotypes
-
A. Aghamohammadi, T. Cheraghi, M. Gharagozlou, M. Movahedi, N. Rezaei, M. Yeganeh, N. Parvaneh, H. Abolhassani, Z. Pourpak, M. Moin, IgA deficiency: Correlation between clinical and immunological phenotypes. J. Clin. Immunol. 29, 130-136 (2009).
-
(2009)
J. Clin. Immunol.
, vol.29
, pp. 130-136
-
-
Aghamohammadi, A.1
Cheraghi, T.2
Gharagozlou, M.3
Movahedi, M.4
Rezaei, N.5
Yeganeh, M.6
Parvaneh, N.7
Abolhassani, H.8
Pourpak, Z.9
Moin, M.10
-
20
-
-
84901400545
-
Association between IgA deficiency & other autoimmune conditions: A population-based matched cohort study
-
J. F. Ludvigsson, M. Neovius, L. Hammarstrom, Association between IgA deficiency & other autoimmune conditions: A population-based matched cohort study. J. Clin. Immunol. 34, 444-451 (2014).
-
(2014)
J. Clin. Immunol.
, vol.34
, pp. 444-451
-
-
Ludvigsson, J.F.1
Neovius, M.2
Hammarstrom, L.3
-
21
-
-
0022871605
-
Secretory antibodies in IgA-deficient and immunosuppressed individuals
-
L. Mellander, J. Bjorkander, B. Carlsson, L. Hanson, Secretory antibodies in IgA-deficient and immunosuppressed individuals. J. Clin. Immunol. 6, 284-291 (1986).
-
(1986)
J. Clin. Immunol.
, vol.6
, pp. 284-291
-
-
Mellander, L.1
Bjorkander, J.2
Carlsson, B.3
Hanson, L.4
-
22
-
-
0023138381
-
The clinical condition of IgA-deficient patients is related to the proportion of IgD-and IgM-producing cells in their nasal mucosa
-
P. Brandtzaeg, G. Karlsson, G. Hansson, B. Petruson, J. Bjorkander, L. A. Hanson, The clinical condition of IgA-deficient patients is related to the proportion of IgD-and IgM-producing cells in their nasal mucosa. Clin. Exp. Immunol. 67, 626-636 (1987).
-
(1987)
Clin. Exp. Immunol.
, vol.67
, pp. 626-636
-
-
Brandtzaeg, P.1
Karlsson, G.2
Hansson, G.3
Petruson, B.4
Bjorkander, J.5
Hanson, L.A.6
-
23
-
-
0000402712
-
Gamma-globulins: Quantitative relationships in human serum and nonvascular fluids
-
W. B. Chodirker, T. B. Tomasi Jr., Gamma-globulins: Quantitative relationships in human serum and nonvascular fluids. Science 142, 1080-1081 (1963).
-
(1963)
Science
, vol.142
, pp. 1080-1081
-
-
Chodirker, W.B.1
Tomasi, T.B.2
-
24
-
-
35848931007
-
IgA response to symbiotic bacteria as a mediator of gut homeostasis
-
D. A. Peterson, N. P. McNulty, J. L. Guruge, J. I. Gordon, IgA response to symbiotic bacteria as a mediator of gut homeostasis. Cell Host Microbe 2, 328-339 (2007).
-
(2007)
Cell Host Microbe
, vol.2
, pp. 328-339
-
-
Peterson, D.A.1
McNulty, N.P.2
Guruge, J.L.3
Gordon, J.I.4
-
25
-
-
84887886701
-
Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut
-
T. C. Cullender, B. Chassaing, A. Janzon, K. A. Kumar, C. E. Muller, J. J. Werner, L. T. Angenent, M. E. Bell, A. G. Hay, D. A. Peterson, J. Walter, M. Vijay-Kumar, A. T. Gewirtz, R. E. Ley, Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut. Cell Host Microbe 14, 571-581 (2013).
-
(2013)
Cell Host Microbe
, vol.14
, pp. 571-581
-
-
Cullender, T.C.1
Chassaing, B.2
Janzon, A.3
Kumar, K.A.4
Muller, C.E.5
Werner, J.J.6
Angenent, L.T.7
Bell, M.E.8
Hay, A.G.9
Peterson, D.A.10
Walter, J.11
Vijay-Kumar, M.12
Gewirtz, A.T.13
Ley, R.E.14
-
26
-
-
84907300008
-
Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease
-
N. W. Palm, M. R. de Zoete, T. W. Cullen, N. A. Barry, J. Stefanowski, L. Hao, P. H. Degnan, J. Hu, I. Peter, W. Zhang, E. Ruggiero, J. H. Cho, A. L. Goodman, R. A. Flavell, Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease. Cell 158, 1000-1010 (2014).
-
(2014)
Cell
, vol.158
, pp. 1000-1010
-
-
Palm, N.W.1
De Zoete, M.R.2
Cullen, T.W.3
Barry, N.A.4
Stefanowski, J.5
Hao, L.6
Degnan, P.H.7
Hu, J.8
Peter, I.9
Zhang, W.10
Ruggiero, E.11
Cho, J.H.12
Goodman, A.L.13
Flavell, R.A.14
-
27
-
-
80054919389
-
Secretory IgA's complex roles in immunity and mucosal homeostasis in the gut
-
N. J. Mantis, N. Rol, B. Corthesy, Secretory IgA's complex roles in immunity and mucosal homeostasis in the gut. Mucosal Immunol. 4, 603-611 (2011).
-
(2011)
Mucosal Immunol.
, vol.4
, pp. 603-611
-
-
Mantis, N.J.1
Rol, N.2
Corthesy, B.3
-
28
-
-
84857728047
-
Primary immunodeficiency diseases: An update on the classification from the International Union of Immunological Societies Expert Committee for Primary Immunodeficiency
-
W. Al-Herz, A. Bousfiha, J.-L. Casanova, H. Chapel, M. E. Conley, C. Cunningham-Rundles, A. Etzioni, A. Fischer, J. L. Franco, R. S. Geha, L. Hammarstrom, S. Nonoyama, L. D. Notarangelo, H. D. Ochs, J. M. Puck, C. M. Roifman, R. Seger, M. L. K. Tang, Primary immunodeficiency diseases: An update on the classification from the International Union of Immunological Societies Expert Committee for Primary Immunodeficiency. Front. Immunol. 2, 54 (2011).
-
(2011)
Front. Immunol.
, vol.2
, pp. 54
-
-
Al-Herz, W.1
Bousfiha, A.2
Casanova, J.-L.3
Chapel, H.4
Conley, M.E.5
Cunningham-Rundles, C.6
Etzioni, A.7
Fischer, A.8
Franco, J.L.9
Geha, R.S.10
Hammarstrom, L.11
Nonoyama, S.12
Notarangelo, L.D.13
Ochs, H.D.14
Puck, J.M.15
Roifman, C.M.16
Seger, R.17
Tang, M.L.K.18
-
29
-
-
84979937087
-
Analysis of bacterial-surface-specific antibodies in body fluids using bacterial flow cytometry
-
K. Moor, J. Fadlallah, A. Toska, D. Sterlin, M. L. Balmer, A. J. Macpherson, G. Gorochov, M. Larsen, E. Slack, Analysis of bacterial-surface-specific antibodies in body fluids using bacterial flow cytometry. Nat. Protoc. 11, 1531-1553 (2016).
-
(2016)
Nat. Protoc.
, vol.11
, pp. 1531-1553
-
-
Moor, K.1
Fadlallah, J.2
Toska, A.3
Sterlin, D.4
Balmer, M.L.5
Macpherson, A.J.6
Gorochov, G.7
Larsen, M.8
Slack, E.9
-
30
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
J. Qin, R. Li, J. Raes, M. Arumugam, K. S. Burgdorf, C. Manichanh, T. Nielsen, N. Pons, F. Levenez, T. Yamada, D. R. Mende, J. Li, J. Xu, S. Li, D. Li, J. Cao, B. Wang, H. Liang, H. Zheng, Y. Xie, J. Tap, P. Lepage, M. Bertalan, J.-M. Batto, T. Hansen, D. Le Paslier, A. Linneberg, H. B. Nielsen, E. Pelletier, P. Renault, T. Sicheritz-Ponten, K. Turner, H. Zhu, C. Yu, S. Li, M. Jian, Y. Zhou, Y. Li, X. Zhang, S. Li, N. Qin, H. Yang, J. Wang, S. Brunak, J. Dore, F. Guarner, K. Kristiansen, O. Pedersen, J. Parkhill, J. Weissenbach; MetaHIT Consortium, P. Bork, S. D. Ehrlich, J. Wang, A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65 (2010).
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.-M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
Sicheritz-Ponten, T.31
Turner, K.32
Zhu, H.33
Yu, C.34
Li, S.35
Jian, M.36
Zhou, Y.37
Li, Y.38
Zhang, X.39
Li, S.40
Qin, N.41
Yang, H.42
Wang, J.43
Brunak, S.44
Dore, J.45
Guarner, F.46
Kristiansen, K.47
Pedersen, O.48
Parkhill, J.49
Weissenbach, J.50
Consortium, M.51
Bork, P.52
Ehrlich, S.D.53
Wang, J.54
more..
-
31
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
M. Arumugam, J. Raes, E. Pelletier, D. Le Paslier, T. Yamada, D. R. Mende, G. R. Fernandes, J. Tap, T. Bruls, J.-M. Batto, M. Bertalan, N. Borruel, F. Casellas, L. Fernandez, L. Gautier, T. Hansen, M. Hattori, T. Hayashi, M. Kleerebezem, K. Kurokawa, M. Leclerc, F. Levenez, C. Manichanh, H. B. Nielsen, T. Nielsen, N. Pons, J. Poulain, J. Qin, T. Sicheritz-Ponten, S. Tims, D. Torrents, E. Ugarte, E. G. Zoetendal, J. Wang, F. Guarner, O. Pedersen, W. M. de Vos, S. Brunak, J. Dore; MetaHIT Consortium, J. Weissenbach, S. D. Ehrlich, P. Bork, Enterotypes of the human gut microbiome. Nature 473, 174-180 (2011).
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.-M.10
Bertalan, M.11
Borruel, N.12
Casellas, F.13
Fernandez, L.14
Gautier, L.15
Hansen, T.16
Hattori, M.17
Hayashi, T.18
Kleerebezem, M.19
Kurokawa, K.20
Leclerc, M.21
Levenez, F.22
Manichanh, C.23
Nielsen, H.B.24
Nielsen, T.25
Pons, N.26
Poulain, J.27
Qin, J.28
Sicheritz-Ponten, T.29
Tims, S.30
Torrents, D.31
Ugarte, E.32
Zoetendal, E.G.33
Wang, J.34
Guarner, F.35
Pedersen, O.36
De Vos, W.M.37
Brunak, S.38
Dore, J.39
Consortium, M.40
Weissenbach, J.41
Ehrlich, S.D.42
Bork, P.43
more..
-
32
-
-
84905730761
-
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
-
H. B. Nielsen, M. Almeida, A. S. Juncker, S. Rasmussen, J. Li, S. Sunagawa, D. R. Plichta, L. Gautier, A. G. Pedersen, E. Le Chatelier, E. Pelletier, I. Bonde, T. Nielsen, C. Manichanh, M. Arumugam, J.-M. Batto, M. B. Q. dos Santos, N. Blom, N. Borruel, K. S. Burgdorf, F. Boumezbeur, F. Casellas, J. Dore, P. Dworzynski, F. Guarner, T. Hansen, F. Hildebrand, R. S. Kaas, S. Kennedy, K. Kristiansen, J. R. Kultima, P. Leonard, F. Levenez, O. Lund, B. Moumen, D. Le Paslier, N. Pons, O. Pedersen, E. Prifti, J. Qin, J. Raes, S. Sorensen, J. Tap, S. Tims, D. W. Ussery, T. Yamada; MetaHIT Consortium, P. Renault, T. Sicheritz-Ponten, P. Bork, J. Wang, S. Brunak, S. D. Ehrlich, Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat. Biotechnol. 32, 822-828 (2014).
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 822-828
-
-
Nielsen, H.B.1
Almeida, M.2
Juncker, A.S.3
Rasmussen, S.4
Li, J.5
Sunagawa, S.6
Plichta, D.R.7
Gautier, L.8
Pedersen, A.G.9
Le Chatelier, E.10
Pelletier, E.11
Bonde, I.12
Nielsen, T.13
Manichanh, C.14
Arumugam, M.15
Batto, J.-M.16
Dos Santos, M.B.Q.17
Blom, N.18
Borruel, N.19
Burgdorf, K.S.20
Boumezbeur, F.21
Casellas, F.22
Dore, J.23
Dworzynski, P.24
Guarner, F.25
Hansen, T.26
Hildebrand, F.27
Kaas, R.S.28
Kennedy, S.29
Kristiansen, K.30
Kultima, J.R.31
Leonard, P.32
Levenez, F.33
Lund, O.34
Moumen, B.35
Le Paslier, D.36
Pons, N.37
Pedersen, O.38
Prifti, E.39
Qin, J.40
Raes, J.41
Sorensen, S.42
Tap, J.43
Tims, S.44
Ussery, D.W.45
Yamada, T.46
Consortium, M.47
Renault, P.48
Sicheritz-Ponten, T.49
Bork, P.50
Wang, J.51
Brunak, S.52
Ehrlich, S.D.53
more..
-
33
-
-
84907225684
-
Alterations of the human gut microbiome in liver cirrhosis
-
N. Qin, F. Yang, A. Li, E. Prifti, Y. Chen, L. Shao, J. Guo, E. Le Chatelier, J. Yao, L. Wu, J. Zhou, S. Ni, L. Liu, N. Pons, J. M. Batto, S. P. Kennedy, P. Leonard, C. Yuan, W. Ding, Y. Chen, X. Hu, B. Zheng, G. Qian, W. Xu, S. D. Ehrlich, S. Zheng, L. Li, Alterations of the human gut microbiome in liver cirrhosis. Nature 513, 59-64 (2014).
-
(2014)
Nature
, vol.513
, pp. 59-64
-
-
Qin, N.1
Yang, F.2
Li, A.3
Prifti, E.4
Chen, Y.5
Shao, L.6
Guo, J.7
Le Chatelier, E.8
Yao, J.9
Wu, L.10
Zhou, J.11
Ni, S.12
Liu, L.13
Pons, N.14
Batto, J.M.15
Kennedy, S.P.16
Leonard, P.17
Yuan, C.18
Ding, W.19
Chen, Y.20
Hu, X.21
Zheng, B.22
Qian, G.23
Xu, W.24
Ehrlich, S.D.25
Zheng, S.26
Li, L.27
more..
-
34
-
-
84925351919
-
Quality control of microbiota metagenomics by k-mer analysis
-
F. Plaza Onate, J.-M. Batto, C. Juste, J. Fadlallah, C. Fougeroux, D. Gouas, N. Pons, S. Kennedy, F. Levenez, J. Dore, S. D. Ehrlich, G. Gorochov, M. Larsen, Quality control of microbiota metagenomics by k-mer analysis. BMC Genomics 16, 183 (2015).
-
(2015)
BMC Genomics
, vol.16
, pp. 183
-
-
Plaza Onate, F.1
Batto, J.-M.2
Juste, C.3
Fadlallah, J.4
Fougeroux, C.5
Gouas, D.6
Pons, N.7
Kennedy, S.8
Levenez, F.9
Dore, J.10
Ehrlich, S.D.11
Gorochov, G.12
Larsen, M.13
-
35
-
-
0014421231
-
Immunoglobulin M: Local synthesis and selective secretion in patients with immunoglobulin A deficiency
-
P. Brandtzaeg, I. Fjellanger, S. T. Gjeruldsen, Immunoglobulin M: Local synthesis and selective secretion in patients with immunoglobulin A deficiency. Science 160, 789-791 (1968).
-
(1968)
Science
, vol.160
, pp. 789-791
-
-
Brandtzaeg, P.1
Fjellanger, I.2
Gjeruldsen, S.T.3
-
36
-
-
1842405428
-
Evidence for a large compartment of IgM-expressing memory B cells in humans
-
U. Klein, R. Kuppers, K. Rajewsky, Evidence for a large compartment of IgM-expressing memory B cells in humans. Blood 89, 1288-1298 (1997).
-
(1997)
Blood
, vol.89
, pp. 1288-1298
-
-
Klein, U.1
Kuppers, R.2
Rajewsky, K.3
-
37
-
-
84991929179
-
Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy
-
A. L. Kau, J. D. Planer, J. Liu, S. Rao, T. Yatsunenko, I. Trehan, M. J. Manary, T.-C. Liu, T. S. Stappenbeck, K. M. Maleta, P. Ashorn, K. G. Dewey, E. R. Houpt, C.-S. Hsieh, J. I. Gordon, Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy. Sci. Transl. Med. 7, 276ra24 (2015).
-
(2015)
Sci. Transl. Med.
, vol.7
, pp. 276ra24
-
-
Kau, A.L.1
Planer, J.D.2
Liu, J.3
Rao, S.4
Yatsunenko, T.5
Trehan, I.6
Manary, M.J.7
Liu, T.-C.8
Stappenbeck, T.S.9
Maleta, K.M.10
Ashorn, P.11
Dewey, K.G.12
Houpt, E.R.13
Hsieh, C.-S.14
Gordon, J.I.15
-
38
-
-
84973125318
-
Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice
-
J. D. Planer, Y. Peng, A. L. Kau, L. V. Blanton, I. M. Ndao, P. I. Tarr, B. B. Warner, J. I. Gordon, Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice. Nature 534, 263-266 (2016).
-
(2016)
Nature
, vol.534
, pp. 263-266
-
-
Planer, J.D.1
Peng, Y.2
Kau, A.L.3
Blanton, L.V.4
Ndao, I.M.5
Tarr, P.I.6
Warner, B.B.7
Gordon, J.I.8
-
39
-
-
84890675911
-
Active and secreted IgA-coated bacterial fractions from the human gut reveal an under-represented microbiota core
-
G. D'Auria, F. Peris-Bondia, M. Džunkova, A. Mira, M. C. Collado, A. Latorre, A. Moya, Active and secreted IgA-coated bacterial fractions from the human gut reveal an under-represented microbiota core. Sci. Rep. 3, 3515 (2013).
-
(2013)
Sci. Rep.
, vol.3
, pp. 3515
-
-
D'Auria, G.1
Peris-Bondia, F.2
Džunkova, M.3
Mira, A.4
Collado, M.C.5
Latorre, A.6
Moya, A.7
-
40
-
-
84994802430
-
Aberrant IgA responses to the gut microbiota during infancy precede asthma and allergy development
-
e14
-
M. Dzidic, T. Abrahamsson, A. Artacho, B. Bjorksten, M. C. Collado, A. Mira, M. Jenmalm, Aberrant IgA responses to the gut microbiota during infancy precede asthma and allergy development. J. Allergy Clin. Immunol. 139, 1017-1025.e14 (2017).
-
(2017)
J. Allergy Clin. Immunol.
, vol.139
, pp. 1017-1025
-
-
Dzidic, M.1
Abrahamsson, T.2
Artacho, A.3
Bjorksten, B.4
Collado, M.C.5
Mira, A.6
Jenmalm, M.7
-
41
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
-
H. Sokol, B. Pigneur, L. Watterlot, O. Lakhdari, L. G. Bermudez-Humaran, J.-J. Gratadoux, S. Blugeon, C. Bridonneau, J.-P. Furet, G. Corthier, C. Grangette, N. Vasquez, P. Pochart, G. Trugnan, G. Thomas, H. M. Blottiere, J. Dore, P. Marteau, P. Seksik, P. Langella, Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc. Natl. Acad. Sci. U.S.A. 105, 16731-16736 (2008).
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 16731-16736
-
-
Sokol, H.1
Pigneur, B.2
Watterlot, L.3
Lakhdari, O.4
Bermudez-Humaran, L.G.5
Gratadoux, J.-J.6
Blugeon, S.7
Bridonneau, C.8
Furet, J.-P.9
Corthier, G.10
Grangette, C.11
Vasquez, N.12
Pochart, P.13
Trugnan, G.14
Thomas, G.15
Blottiere, H.M.16
Dore, J.17
Marteau, P.18
Seksik, P.19
Langella, P.20
more..
-
42
-
-
84904048875
-
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis
-
K. Machiels, M. Joossens, J. Sabino, V. De Preter, I. Arijs, V. Eeckhaut, V. Ballet, K. Claes, F. Van Immerseel, K. Verbeke, M. Ferrante, J. Verhaegen, P. Rutgeerts, S. Vermeire, A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. Gut 63, 1275-1283 (2014).
-
(2014)
Gut
, vol.63
, pp. 1275-1283
-
-
Machiels, K.1
Joossens, M.2
Sabino, J.3
De Preter, V.4
Arijs, I.5
Eeckhaut, V.6
Ballet, V.7
Claes, K.8
Van Immerseel, F.9
Verbeke, K.10
Ferrante, M.11
Verhaegen, J.12
Rutgeerts, P.13
Vermeire, S.14
-
43
-
-
70349488325
-
Low counts of Faecalibacterium prausnitzii in colitis microbiota
-
H. N. Sokol, P. Seksik, J. P. Furet, O. Firmesse, I. Nion-Larmurier, L. Beaugerie, J. Cosnes, G. Corthier, P. Marteau, J. Dore, Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm. Bowel Dis. 15, 1183-1189 (2009).
-
(2009)
Inflamm. Bowel Dis.
, vol.15
, pp. 1183-1189
-
-
Sokol, H.N.1
Seksik, P.2
Furet, J.P.3
Firmesse, O.4
Nion-Larmurier, I.5
Beaugerie, L.6
Cosnes, J.7
Corthier, G.8
Marteau, P.9
Dore, J.10
-
44
-
-
79957576718
-
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis
-
E. Elinav, T. Strowig, A. L. Kau, J. Henao-Mejia, C. A. Thaiss, C. J. Booth, D. R. Peaper, J. Bertin, S. C. Eisenbarth, J. I. Gordon, R. A. Flavell, NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell 145, 745-757 (2011).
-
(2011)
Cell
, vol.145
, pp. 745-757
-
-
Elinav, E.1
Strowig, T.2
Kau, A.L.3
Henao-Mejia, J.4
Thaiss, C.A.5
Booth, C.J.6
Peaper, D.R.7
Bertin, J.8
Eisenbarth, S.C.9
Gordon, J.I.10
Flavell, R.A.11
-
45
-
-
84917706862
-
Immunomodulatory properties of Streptococcus and Veillonella isolates from the human small intestine microbiota
-
B. van den Bogert, M. Meijerink, E. G. Zoetendal, J. M. Wells, M. Kleerebezem, Immunomodulatory properties of Streptococcus and Veillonella isolates from the human small intestine microbiota. PLOS ONE 9, e114277 (2014).
-
(2014)
PLOS ONE
, vol.9
, pp. e114277
-
-
Van den Bogert, B.1
Meijerink, M.2
Zoetendal, E.G.3
Wells, J.M.4
Kleerebezem, M.5
-
46
-
-
84902241955
-
The influence of oral Veillonella species on biofilms formed by Streptococcus species
-
I. Mashima, F. Nakazawa, The influence of oral Veillonella species on biofilms formed by Streptococcus species. Anaerobe 28, 54-61 (2014).
-
(2014)
Anaerobe
, vol.28
, pp. 54-61
-
-
Mashima, I.1
Nakazawa, F.2
-
47
-
-
33746216089
-
Sepsis caused by Veillonella parvula infection in a 17-year-old patient with X-linked agammaglobulinemia (Bruton's disease)
-
M. Strach, M. Siedlar, D. Kowalczyk, M. Zembala, T. Grodzicki, Sepsis caused by Veillonella parvula infection in a 17-year-old patient with X-linked agammaglobulinemia (Bruton's disease). J. Clin. Microbiol. 44, 2655-2656 (2006).
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 2655-2656
-
-
Strach, M.1
Siedlar, M.2
Kowalczyk, D.3
Zembala, M.4
Grodzicki, T.5
-
48
-
-
85032492045
-
Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation
-
K. Atarashi, W. Suda, C. Luo, T. Kawaguchi, I. Motoo, S. Narushima, Y. Kiguchi, K. Yasuma, E. Watanabe, T. Tanoue, C. A. Thaiss, M. Sato, K. Toyooka, H. S. Said, H. Yamagami, S. A. Rice, D. Gevers, R. C. Johnson, J. A. Segre, K. Chen, J. K. Kolls, E. Elinav, H. Morita, R. J. Xavier, M. Hattori, K. Honda, Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation. Science 358, 359-365 (2017).
-
(2017)
Science
, vol.358
, pp. 359-365
-
-
Atarashi, K.1
Suda, W.2
Luo, C.3
Kawaguchi, T.4
Motoo, I.5
Narushima, S.6
Kiguchi, Y.7
Yasuma, K.8
Watanabe, E.9
Tanoue, T.10
Thaiss, C.A.11
Sato, M.12
Toyooka, K.13
Said, H.S.14
Yamagami, H.15
Rice, S.A.16
Gevers, D.17
Johnson, R.C.18
Segre, J.A.19
Chen, K.20
Kolls, J.K.21
Elinav, E.22
Morita, H.23
Xavier, R.J.24
Hattori, M.25
Honda, K.26
more..
-
49
-
-
85017350184
-
High-avidity IgA protects the intestine by enchaining growing bacteria
-
K. Moor, M. Diard, M. E. Sellin, B. Felmy, S. Y. Wotzka, A. Toska, E. Bakkeren, M. Arnoldini, F. Bansept, A. Dal Co, T. Voller, A. Minola, B. Fernandez-Rodriguez, G. Agatic, S. Barbieri, L. Piccoli, C. Casiraghi, D. Corti, A. Lanzavecchia, R. R. Regoes, C. Loverdo, R. Stocker, D. R. Brumley, W.-D. Hardt, E. Slack, High-avidity IgA protects the intestine by enchaining growing bacteria. Nature 544, 498-502 (2017).
-
(2017)
Nature
, vol.544
, pp. 498-502
-
-
Moor, K.1
Diard, M.2
Sellin, M.E.3
Felmy, B.4
Wotzka, S.Y.5
Toska, A.6
Bakkeren, E.7
Arnoldini, M.8
Bansept, F.9
Dal Co, A.10
Voller, T.11
Minola, A.12
Fernandez-Rodriguez, B.13
Agatic, G.14
Barbieri, S.15
Piccoli, L.16
Casiraghi, C.17
Corti, D.18
Lanzavecchia, A.19
Regoes, R.R.20
Loverdo, C.21
Stocker, R.22
Brumley, D.R.23
Hardt, W.-D.24
Slack, E.25
more..
-
50
-
-
84983628480
-
High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in mice
-
S. Okai, F. Usui, S. Yokota, Y. Hori-i, M. Hasegawa, T. Nakamura, M. Kurosawa, S. Okada, K. Yamamoto, E. Nishiyama, H. Mori, T. Yamada, K. Kurokawa, S. Matsumoto, M. Nanno, T. Naito, Y. Watanabe, T. Kato, E. Miyauchi, H. Ohno, R. Shinkura, High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in mice. Nat. Microbiol. 1, 16103 (2016).
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 16103
-
-
Okai, S.1
Usui, F.2
Yokota, S.3
Hori-I, Y.4
Hasegawa, M.5
Nakamura, T.6
Kurosawa, M.7
Okada, S.8
Yamamoto, K.9
Nishiyama, E.10
Mori, H.11
Yamada, T.12
Kurokawa, K.13
Matsumoto, S.14
Nanno, M.15
Naito, T.16
Watanabe, Y.17
Kato, T.18
Miyauchi, E.19
Ohno, H.20
Shinkura, R.21
more..
-
51
-
-
79955758146
-
Recognition of gram-positive intestinal bacteria by hybridomaand colostrum-derived secretory immunoglobulin A is mediated by carbohydrates
-
A. Mathias, B. Corthesy, Recognition of gram-positive intestinal bacteria by hybridomaand colostrum-derived secretory immunoglobulin A is mediated by carbohydrates. J. Biol. Chem. 286, 17239-17247 (2011).
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 17239-17247
-
-
Mathias, A.1
Corthesy, B.2
-
52
-
-
85021941611
-
Human secretory IgM emerges from plasma cells clonally related to gut memory B cells and targets highly diverse commensals
-
e8
-
G. Magri, L. Comerma, M. Pybus, J. Sintes, D. Llige, D. Segura-Garzon, S. Bascones, A. Yeste, E. K. Grasset, C. Gutzeit, M. Uzzan, M. Ramanujam, M. C. van Zelm, R. Albero-Gonzalez, I. Vazquez, M. Iglesias, S. Serrano, L. Marquez, E. Mercade, S. Mehandru, A. Cerutti, Human secretory IgM emerges from plasma cells clonally related to gut memory B cells and targets highly diverse commensals. Immunity 47, 118-134.e8 (2017).
-
(2017)
Immunity
, vol.47
, pp. 118-134
-
-
Magri, G.1
Comerma, L.2
Pybus, M.3
Sintes, J.4
Llige, D.5
Segura-Garzon, D.6
Bascones, S.7
Yeste, A.8
Grasset, E.K.9
Gutzeit, C.10
Uzzan, M.11
Ramanujam, M.12
Van Zelm, M.C.13
Albero-Gonzalez, R.14
Vazquez, I.15
Iglesias, M.16
Serrano, S.17
Marquez, L.18
Mercade, E.19
Mehandru, S.20
Cerutti, A.21
more..
-
53
-
-
84991677429
-
Altered gut microbiota profile in common variable immunodeficiency associates with levels of lipopolysaccharide and markers of systemic immune activation
-
S. F. Jorgensen, M. Troseid, M. Kummen, J. A. Anmarkrud, A. E. Michelsen, L. T. Osnes, K. Holm, M. L. Hoivik, A. Rashidi, C. P. Dahl, M. Vesterhus, B. Halvorsen, T. E. Mollnes, R. K. Berge, B. Moum, K. E. A. Lundin, B. Fevang, T. Ueland, T. H. Karlsen, P. Aukrust, J. R. Hov, Altered gut microbiota profile in common variable immunodeficiency associates with levels of lipopolysaccharide and markers of systemic immune activation. Mucosal Immunol. 9, 1455-1465 (2016).
-
(2016)
Mucosal Immunol.
, vol.9
, pp. 1455-1465
-
-
Jorgensen, S.F.1
Troseid, M.2
Kummen, M.3
Anmarkrud, J.A.4
Michelsen, A.E.5
Osnes, L.T.6
Holm, K.7
Hoivik, M.L.8
Rashidi, A.9
Dahl, C.P.10
Vesterhus, M.11
Halvorsen, B.12
Mollnes, T.E.13
Berge, R.K.14
Moum, B.15
Lundin, K.E.A.16
Fevang, B.17
Ueland, T.18
Karlsen, T.H.19
Aukrust, P.20
Hov, J.R.21
more..
-
54
-
-
70449713437
-
Pathogenesis and treatment of gastrointestinal disease in antibody deficiency syndromes
-
S. Agarwal, L. Mayer, Pathogenesis and treatment of gastrointestinal disease in antibody deficiency syndromes. J. Allergy Clin. Immunol. 124, 658-664 (2009).
-
(2009)
J. Allergy Clin. Immunol.
, vol.124
, pp. 658-664
-
-
Agarwal, S.1
Mayer, L.2
-
55
-
-
0028867492
-
Immunohistochemical findings in jejunal specimens from patients with IgA deficiency
-
T. Klemola, E. Savilahti, A. Arato, T. Ormala, J. Partanen, C. Eland, S. Koskimies, Immunohistochemical findings in jejunal specimens from patients with IgA deficiency. Gut 37, 519-523 (1995).
-
(1995)
Gut
, vol.37
, pp. 519-523
-
-
Klemola, T.1
Savilahti, E.2
Arato, A.3
Ormala, T.4
Partanen, J.5
Eland, C.6
Koskimies, S.7
-
56
-
-
84907192183
-
Exhaustion of bacteria-specific CD4 T cells and microbial translocation in common variable immunodeficiency disorders
-
M. Perreau, S. Vigano, F. Bellanger, C. Pellaton, G. Buss, D. Comte, T. Roger, C. Lacabaratz, P.-A. Bart, Y. Levy, G. Pantaleo, Exhaustion of bacteria-specific CD4 T cells and microbial translocation in common variable immunodeficiency disorders. J. Exp. Med. 211, 2033-2045 (2014).
-
(2014)
J. Exp. Med.
, vol.211
, pp. 2033-2045
-
-
Perreau, M.1
Vigano, S.2
Bellanger, F.3
Pellaton, C.4
Buss, G.5
Comte, D.6
Roger, T.7
Lacabaratz, C.8
Bart, P.-A.9
Levy, Y.10
Pantaleo, G.11
-
57
-
-
84939439014
-
Presepsin (sCD14-ST), an innate immune response marker in sepsis
-
C. Chenevier-Gobeaux, D. Borderie, N. Weiss, T. Mallet-Coste, Y.-E. Claessens, Presepsin (sCD14-ST), an innate immune response marker in sepsis. Clin. Chim. Acta 450, 97-103 (2015).
-
(2015)
Clin. Chim. Acta
, vol.450
, pp. 97-103
-
-
Chenevier-Gobeaux, C.1
Borderie, D.2
Weiss, N.3
Mallet-Coste, T.4
Claessens, Y.-E.5
-
58
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
E. Le Chatelier, T. Nielsen, J. Qin, E. Prifti, F. Hildebrand, G. Falony, M. Almeida, M. Arumugam, J.-M. Batto, S. Kennedy, P. Leonard, J. Li, K. Burgdorf, N. Grarup, T. Jorgensen, I. Brandslund, H. B. Nielsen, A. S. Juncker, M. Bertalan, F. Levenez, N. Pons, S. Rasmussen, S. Sunagawa, J. Tap, S. Tims, E. G. Zoetendal, S. Brunak, K. Clement, J. Dore, M. Kleerebezem, K. Kristiansen, P. Renault, T. Sicheritz-Ponten, W. M. de Vos, J.-D. Zucker, J. Raes, T. Hansen; MetaHIT consortium, P. Bork, J. Wang, S. D. Ehrlich, O. Pedersen, E. Guedon, C. Delorme, S. Layec, G. Khaci, M. van de Guchte, G. Vandemeulebrouck, A. Jamet, R. Dervyn, N. Sanchez, E. Maguin, F. Haimet, Y. Winogradski, A. Cultrone, M. Leclerc, C. Juste, H. Blottiere, E. Pelletier, D. LePaslier, F. Artiguenave, T. Bruls, J. Weissenbach, K. Turner, J. Parkhill, M. Antolin, C. Manichanh, F. Casellas, N. Boruel, E. Varela, A. Torrejon, F. Guarner, G. Denariaz, M. Derrien, J. E. van Hylckama Vlieg, P. Veiga, R. Oozeer, J. Knol, M. Rescigno, C. Brechot, C. M'Rini, A. Merieux, T. Yamada, Richness of human gut microbiome correlates with metabolic markers. Nature 500, 541-546 (2013).
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Le Chatelier, E.1
Nielsen, T.2
Qin, J.3
Prifti, E.4
Hildebrand, F.5
Falony, G.6
Almeida, M.7
Arumugam, M.8
Batto, J.-M.9
Kennedy, S.10
Leonard, P.11
Li, J.12
Burgdorf, K.13
Grarup, N.14
Jorgensen, T.15
Brandslund, I.16
Nielsen, H.B.17
Juncker, A.S.18
Bertalan, M.19
Levenez, F.20
Pons, N.21
Rasmussen, S.22
Sunagawa, S.23
Tap, J.24
Tims, S.25
Zoetendal, E.G.26
Brunak, S.27
Clement, K.28
Dore, J.29
Kleerebezem, M.30
Kristiansen, K.31
Renault, P.32
Sicheritz-Ponten, T.33
De Vos, W.M.34
Zucker, J.-D.35
Raes, J.36
Hansen, T.37
Consortium, M.38
Bork, P.39
Wang, J.40
Ehrlich, S.D.41
Pedersen, O.42
Guedon, E.43
Delorme, C.44
Layec, S.45
Khaci, G.46
Van De Guchte, M.47
Vandemeulebrouck, G.48
Jamet, A.49
Dervyn, R.50
Sanchez, N.51
Maguin, E.52
Haimet, F.53
Winogradski, Y.54
Cultrone, A.55
Leclerc, M.56
Juste, C.57
Blottiere, H.58
Pelletier, E.59
LePaslier, D.60
Artiguenave, F.61
Bruls, T.62
Weissenbach, J.63
Turner, K.64
Parkhill, J.65
Antolin, M.66
Manichanh, C.67
Casellas, F.68
Boruel, N.69
Varela, E.70
Torrejon, A.71
Guarner, F.72
Denariaz, G.73
Derrien, M.74
Van Hylckama Vlieg, J.E.75
Veiga, P.76
Oozeer, R.77
Knol, J.78
Rescigno, M.79
Brechot, C.80
M'Rini, C.81
Merieux, A.82
Yamada, T.83
more..
-
59
-
-
77953246142
-
Single-molecule enzyme-linked immunosorbent assay detects serum proteins at subfemtomolar concentrations
-
D. M. Rissin, C. W. Kan, T. G. Campbell, S. C. Howes, D. R. Fournier, L. Song, T. Piech, P. P. Patel, L. Chang, A. J. Rivnak, E. P. Ferrell, J. D. Randall, G. K. Provuncher, D. R. Walt, D. C. Duffy, Single-molecule enzyme-linked immunosorbent assay detects serum proteins at subfemtomolar concentrations. Nat. Biotechnol. 28, 595-599 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 595-599
-
-
Rissin, D.M.1
Kan, C.W.2
Campbell, T.G.3
Howes, S.C.4
Fournier, D.R.5
Song, L.6
Piech, T.7
Patel, P.P.8
Chang, L.9
Rivnak, A.J.10
Ferrell, E.P.11
Randall, J.D.12
Provuncher, G.K.13
Walt, D.R.14
Duffy, D.C.15
-
60
-
-
84937112190
-
Quantitative lipopolysaccharide analysis using HPLC/MS/MS and its combination with the limulus amebocyte lysate assay
-
J.-P. Pais de Barros, T. Gautier, W. Sali, C. Adrie, H. Choubley, E. Charron, C. Lalande, N. Le Guern, V. Deckert, M. Monchi, J.-P. Quenot, L. Lagrost, Quantitative lipopolysaccharide analysis using HPLC/MS/MS and its combination with the limulus amebocyte lysate assay. J. Lipid Res. 56, 1363-1369 (2015).
-
(2015)
J. Lipid Res.
, vol.56
, pp. 1363-1369
-
-
Barros De Pais, J.-P.1
Gautier, T.2
Sali, W.3
Adrie, C.4
Choubley, H.5
Charron, E.6
Lalande, C.7
Le Guern, N.8
Deckert, V.9
Monchi, M.10
Quenot, J.-P.11
Lagrost, L.12
-
61
-
-
66949171924
-
Functional delineation and differentiation dynamics of human CD4+ T cells expressing the FoxP3 transcription factor
-
M. Miyara, Y. Yoshioka, A. Kitoh, T. Shima, K. Wing, A. Niwa, C. Parizot, C. Taflin, T. Heike, D. Valeyre, A. Mathian, T. Nakahata, T. Yamaguchi, T. Nomura, M. Ono, Z. Amoura, G. Gorochov, S. Sakaguchi, Functional delineation and differentiation dynamics of human CD4+ T cells expressing the FoxP3 transcription factor. Immunity 30, 899-911 (2009).
-
(2009)
Immunity
, vol.30
, pp. 899-911
-
-
Miyara, M.1
Yoshioka, Y.2
Kitoh, A.3
Shima, T.4
Wing, K.5
Niwa, A.6
Parizot, C.7
Taflin, C.8
Heike, T.9
Valeyre, D.10
Mathian, A.11
Nakahata, T.12
Yamaguchi, T.13
Nomura, T.14
Ono, M.15
Amoura, Z.16
Gorochov, G.17
Sakaguchi, S.18
-
62
-
-
84931291785
-
Sialyl Lewis x (CD15s) identifies highly differentiated and most suppressive FOXP3high regulatory T cells in humans
-
M. Miyara, D. Chader, E. Sage, D. Sugiyama, H. Nishikawa, D. Bouvry, L. Claer, R. Hingorani, R. Balderas, J. Rohrer, N. Warner, A. Chapelier, D. Valeyre, R. Kannagi, S. Sakaguchi, Z. Amoura, G. Gorochov, Sialyl Lewis x (CD15s) identifies highly differentiated and most suppressive FOXP3high regulatory T cells in humans. Proc. Natl. Acad. Sci. U.S.A. 112, 7225-7230 (2015).
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. 7225-7230
-
-
Miyara, M.1
Chader, D.2
Sage, E.3
Sugiyama, D.4
Nishikawa, H.5
Bouvry, D.6
Claer, L.7
Hingorani, R.8
Balderas, R.9
Rohrer, J.10
Warner, N.11
Chapelier, A.12
Valeyre, D.13
Kannagi, R.14
Sakaguchi, S.15
Amoura, Z.16
Gorochov, G.17
-
63
-
-
84908554334
-
Bacterial protein signals are associated with Crohn's disease
-
gutjnl-2012-303786
-
C. Juste, D. P. Kreil, C. Beauvallet, A. Guillot, S. Vaca, C. Carapito, S. Mondot, P. Sykacek, H. Sokol, F. Blon, P. Lepercq, F. Levenez, B. Valot, W. Carre, V. Loux, N. Pons, O. David, B. Schaeffer, P. Lepage, P. Martin, V. Monnet, P. Seksik, L. Beaugerie, S. D. Ehrlich, J.-F. Gibrat, A. Van Dorsselaer, J. Dore, Bacterial protein signals are associated with Crohn's disease. Gut 63, gutjnl-2012-303786 (2014).
-
(2014)
Gut
, vol.63
-
-
Juste, C.1
Kreil, D.P.2
Beauvallet, C.3
Guillot, A.4
Vaca, S.5
Carapito, C.6
Mondot, S.7
Sykacek, P.8
Sokol, H.9
Blon, F.10
Lepercq, P.11
Levenez, F.12
Valot, B.13
Carre, W.14
Loux, V.15
Pons, N.16
David, O.17
Schaeffer, B.18
Lepage, P.19
Martin, P.20
Monnet, V.21
Seksik, P.22
Beaugerie, L.23
Ehrlich, S.D.24
Gibrat, J.-F.25
Van Dorsselaer, A.26
Dore, J.27
more..
-
64
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
J. J. Godon, E. Zumstein, P. Dabert, F. Habouzit, R. Moletta, Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63, 2802-2813 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
65
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
E. R. Mardis, The impact of next-generation sequencing technology on genetics. Trends Genet. 24, 133-141 (2008).
-
(2008)
Trends Genet.
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
66
-
-
79953177468
-
Aligning short sequencing reads with Bowtie
-
B. Langmead, Aligning short sequencing reads with Bowtie. Curr. Protoc. Bioinformatics 32, 11.7.1-11.7.14 (2010).
-
(2010)
Curr. Protoc. Bioinformatics
, vol.32
, pp. 1171-11714
-
-
Langmead, B.1
-
67
-
-
84887791432
-
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
-
M.-A. Dillies, A. Rau, J. Aubert, C. Hennequet-Antier, M. Jeanmougin, N. Servant, C. Keime, G. Marot, D. Castel, J. Estelle, G. Guernec, B. Jagla, L. Jouneau, D. Laloe, C. Le Gall, B. Schaeffer, S. Le Crom, M. Guedj, F. Jaffrezic, A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. Brief. Bioinform. 14, 671-683 (2013).
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 671-683
-
-
Dillies, M.-A.1
Rau, A.2
Aubert, J.3
Hennequet-Antier, C.4
Jeanmougin, M.5
Servant, N.6
Keime, C.7
Marot, G.8
Castel, D.9
Estelle, J.10
Guernec, G.11
Jagla, B.12
Jouneau, L.13
Laloe, D.14
Le Gall, C.15
Schaeffer, B.16
Le Crom, S.17
Guedj, M.18
Jaffrezic, F.19
-
68
-
-
0025045135
-
Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction
-
K. H. Wilson, R. B. Blitchington, R. C. Greene, Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J. Clin. Microbiol. 28, 1942-1946 (1990).
-
(1990)
J. Clin. Microbiol.
, vol.28
, pp. 1942-1946
-
-
Wilson, K.H.1
Blitchington, R.B.2
Greene, R.C.3
-
69
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
J. G. Caporaso, J. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K. Costello, N. Fierer, A. G. Pena, J. K. Goodrich, J. I. Gordon, G. A. Huttley, S. T. Kelley, D. Knights, J. E. Koenig, R. E. Ley, C. A. Lozupone, D. McDonald, B. D. Muegge, M. Pirrung, J. Reeder, J. R. Sevinsky, P. J. Turnbaugh, W. A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, R. Knight, QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
70
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
W. Li, A. Godzik, Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
71
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
J. R. Cole, Q. Wang, E. Cardenas, J. Fish, B. Chai, R. J. Farris, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, T. Marsh, G. M. Garrity, J. M. Tiedje, The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, D141-D145 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
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