Quality control of microbiota metagenomics by k-mer analysis

BMC Genomics

Volumn 16, Issue 1, 2015, Pages

  Plaza Onate, Florian ^a   Batto, Jean Michel ^b   Juste, Catherine ^a,b   Fadlallah, Jehane ^c,d   Fougeroux, Cyrielle ^c   Gouas, Doriane ^c,e   Pons, Nicolas ^a   Kennedy, Sean ^a   Levenez, Florence ^a,b   Dore, Joel ^a,b   Ehrlich, S Dusko ^a,b   Gorochov, Guy ^c,d,e   Larsen, Martin ^c,d,e  

^a University of Paris Saclay   (France)

^b UMR1319 MICALIS   (France)

^c SORBONNE UNIVERSITÉ   (France)

^d PITIÉ SALPÊTRIÈRE HOSPITAL   (France)

^e Assistance publique Hôpitaux de Paris   (France)

Author keywords

Metagenomics; Next generation sequencing; Quality control; Sample size limits; Sampling bias

Indexed keywords

GENOMIC DNA;

ARTICLE; BACTERIAL GENOME; BIOINFORMATICS; DNA EXTRACTION; FECES ANALYSIS; GENE MAPPING; GENE SEQUENCE; HUMAN; K MER ANALYSIS; METAGENOME; METAGENOMICS; MICROFLORA; NONHUMAN; QUALITY CONTROL; STATISTICAL ANALYSIS; BACTERIUM; CLASSIFICATION; CLUSTER ANALYSIS; FECES; GASTROINTESTINAL TRACT; GENETICS; MICROBIOLOGY; PROCEDURES; SENSITIVITY AND SPECIFICITY; STANDARDS;

BACTERIA; CLUSTER ANALYSIS; FECES; GASTROINTESTINAL TRACT; GENOME, BACTERIAL; HUMANS; METAGENOME; METAGENOMICS; MICROBIOTA; QUALITY CONTROL; SENSITIVITY AND SPECIFICITY;

EID: 84925351919     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1406-7     Document Type: Article

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