메뉴 건너뛰기




Volumn 2018, Issue , 2018, Pages 31.12.1-31.12.23

CRISPR/Cas9-mediated genome editing in Epstein-Barr virus-transformed lymphoblastoid B-cell lines

Author keywords

Burkitt lymphoma; CRISPR; Enhancer; Epstein Barr virus; Genome editing; Lymphoblastoid

Indexed keywords

GREEN FLUORESCENT PROTEIN; GUIDE RNA; RIBONUCLEOPROTEIN; SINGLE GUIDE RNA; UNCLASSIFIED DRUG;

EID: 85042097534     PISSN: 19343639     EISSN: 19343647     Source Type: Journal    
DOI: 10.1002/cpmb.51     Document Type: Article
Times cited : (26)

References (37)
  • 1
    • 85020445347 scopus 로고    scopus 로고
    • A decade of discovery: CRISPR functions and applications
    • Barrangou, R., & Horvath, P. (2017). A decade of discovery: CRISPR functions and applications. Nature Microbiology, 2, 17092. doi: 10.1038/nmicrobiol.2017.92
    • (2017) Nature Microbiology , vol.2 , pp. 17092
    • Barrangou, R.1    Horvath, P.2
  • 3
    • 84917725056 scopus 로고    scopus 로고
    • Easy quantitative assessment of genome editing by sequence trace decomposition
    • Brinkman, E. K., Chen, T., Amendola, M., & van Steensel, B. (2014). Easy quantitative assessment of genome editing by sequence trace decomposition. Nucleic Acids Research, 42(22), e168-e168. doi: 10.1093/nar/gku936
    • (2014) Nucleic Acids Research , vol.42 , Issue.22
    • Brinkman, E.K.1    Chen, T.2    Amendola, M.3    van Steensel, B.4
  • 4
    • 84905388288 scopus 로고    scopus 로고
    • Characterization of genomic deletion efficiency mediated by clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells
    • Canver, M. C., Bauer, D. E., Dass, A., Yien, Y. Y., Chung, J., Masuda, T., Orkin, S. H. (2017). Characterization of genomic deletion efficiency mediated by clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells. Journal of Biological Chemistry, 292(6), 2556. doi: 10.1074/jbc.A114.564625
    • (2017) Journal of Biological Chemistry , vol.292 , Issue.6 , pp. 2556
    • Canver, M.C.1    Bauer, D.E.2    Dass, A.3    Yien, Y.Y.4    Chung, J.5    Masuda, T.6    Orkin, S.H.7
  • 5
    • 84946925193 scopus 로고    scopus 로고
    • BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis
    • Canver, M. C., Smith, E. C., Sher, F., Pinello, L., Sanjana, N. E., Shalem, O., Bauer, D. E. (2015). BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis. Nature, 527(7577), 192-197. doi: 10.1038/nature15521. Retrieved from https://www.nature.com/nature/journal/v527/n7577/abs/nature15521.htmlsupplementary-information
    • (2015) Nature , vol.527 , Issue.7577 , pp. 192-197
    • Canver, M.C.1    Smith, E.C.2    Sher, F.3    Pinello, L.4    Sanjana, N.E.5    Shalem, O.6    Bauer, D.E.7
  • 6
    • 57149114316 scopus 로고    scopus 로고
    • Genetic analysis of human traits in vitro: Drug response and gene expression in lymphoblastoid cell lines
    • Choy, E., Yelensky, R., Bonakdar, S., Plenge, R. M., Saxena, R., De Jager, P. L., Altshuler, D. (2008). Genetic analysis of human traits in vitro: Drug response and gene expression in lymphoblastoid cell lines. PLoS Genetics, 4(11), e1000287. doi: 10.1371/journal.pgen.1000287
    • (2008) PLoS Genetics , vol.4 , Issue.11
    • Choy, E.1    Yelensky, R.2    Bonakdar, S.3    Plenge, R.M.4    Saxena, R.5    De Jager, P.L.6    Altshuler, D.7
  • 7
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Zhang, F. (2013). Multiplex genome engineering using CRISPR/Cas systems. Science, 339(6121), 819-823. doi: 10.1126/science.1231143
    • (2013) Science , vol.339 , Issue.6121 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5    Habib, N.6    Zhang, F.7
  • 9
    • 85017510953 scopus 로고    scopus 로고
    • A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells
    • Diao, Y., Fang, R., Li, B., Meng, Z., Yu, J., Qiu, Y., Ren, B. (2017). A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells. Nature Methods, 14(6), 629-635. doi: 10.1038/nmeth.4264
    • (2017) Nature Methods , vol.14 , Issue.6 , pp. 629-635
    • Diao, Y.1    Fang, R.2    Li, B.3    Meng, Z.4    Yu, J.5    Qiu, Y.6    Ren, B.7
  • 10
    • 84957605863 scopus 로고    scopus 로고
    • Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
    • Doench, J. G., Fusi, N., Sullender, M., Hegde, M., Vaimberg, E. W., Donovan, K. F., Root, D. E. (2016). Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9. Nature Biotechnology, 34(2), 184-191. doi: 10.1038/nbt.3437. Retrieved from https://www.nature.com/nbt/journal/v34/n2/abs/nbt.3437.html-supplementa ry-information
    • (2016) Nature Biotechnology , vol.34 , Issue.2 , pp. 184-191
    • Doench, J.G.1    Fusi, N.2    Sullender, M.3    Hegde, M.4    Vaimberg, E.W.5    Donovan, K.F.6    Root, D.E.7
  • 11
    • 84921540377 scopus 로고    scopus 로고
    • Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation
    • Doench, J. G., Hartenian, E., Graham, D. B., Tothova, Z., Hegde, M., Smith, I., Root, D. E. (2014). Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation. Nature Biotechnology, 32(12), 1262-1267. doi: 10.1038/nbt.3026. Retrieved from https://www.nature.com/nbt/journal/v32/n12/abs/nbt.3026.html-supplementary-infor mation
    • (2014) Nature Biotechnology , vol.32 , Issue.12 , pp. 1262-1267
    • Doench, J.G.1    Hartenian, E.2    Graham, D.B.3    Tothova, Z.4    Hegde, M.5    Smith, I.6    Root, D.E.7
  • 12
    • 79953271731 scopus 로고    scopus 로고
    • Quantitation of DNA and RNA with Absorption and Fluorescence Spectroscopy
    • Gallagher, S. R. (2011). Quantitation of DNA and RNA with Absorption and Fluorescence Spectroscopy. Current Protocols in Molecular Biology. 93, 3D:A.3D.1-A.3D.14
    • (2011) Current Protocols in Molecular Biology , vol.93
    • Gallagher, S.R.1
  • 13
    • 84930330653 scopus 로고    scopus 로고
    • TRAF1 Coordinates polyubiquitin signaling to enhance Epstein-Barr Virus LMP1-mediated growth and survival pathway activation
    • Greenfeld, H., Takasaki, K., Walsh, M. J., Ersing, I., Bernhardt, K., Ma, Y., Gewurz, B. E. (2015). TRAF1 Coordinates polyubiquitin signaling to enhance Epstein-Barr Virus LMP1-mediated growth and survival pathway activation. PLoS Pathogens, 11(5), e1004890. doi: 10.1371/journal.ppat.1004890
    • (2015) PLoS Pathogens , vol.11 , Issue.5
    • Greenfeld, H.1    Takasaki, K.2    Walsh, M.J.3    Ersing, I.4    Bernhardt, K.5    Ma, Y.6    Gewurz, B.E.7
  • 14
    • 84988808534 scopus 로고    scopus 로고
    • CRISPR-Cas: Biology, mechanisms and relevance. Philosophical Transactions of the Royal Society of London
    • Hille, F., & Charpentier, E. (2016). CRISPR-Cas: Biology, mechanisms and relevance. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 371(1707). doi: 10.1098/rstb.2015.0496
    • (2016) Series B, Biological Sciences , vol.371 , Issue.1707
    • Hille, F.1    Charpentier, E.2
  • 15
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPR-Cas9 for genome engineering
    • Hsu, P. D., Lander, E. S., & Zhang, F. (2014). Development and applications of CRISPR-Cas9 for genome engineering. Cell, 157(6), 1262-1278. doi: 10.1016/j.cell.2014.05 .010
    • (2014) Cell , vol.157 , Issue.6 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 16
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project. (2003). Nature, 426(6968), 789-796. REtrieved from https://www.nature.com/nature/journal/v426/n6968/suppinfo/nature02168_S1.html. doi: 10.1038/nature02168
    • (2003) Nature , vol.426 , Issue.6968 , pp. 789-796
  • 17
    • 84923007402 scopus 로고    scopus 로고
    • 3D genome landscape of Epstein-Barr Virus oncoproteins and virus activated NF-B in lymphoblastoid cells
    • Jiang, S., Zhou, H., Liang, J., Gerdt, C., Wang, C., Ke, L., Zhao, B. (2017). 3D genome landscape of Epstein-Barr Virus oncoproteins and virus activated NF-B in lymphoblastoid cells. Cell Host & Microbe, Accepted). 17, 205-216. doi: 10.1016/j.chom.2014.12.013
    • (2017) Cell Host & Microbe, Accepted) , vol.17 , pp. 205-216
    • Jiang, S.1    Zhou, H.2    Liang, J.3    Gerdt, C.4    Wang, C.5    Ke, L.6    Zhao, B.7
  • 18
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A., & Charpentier, E. (2012). A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337(6096), 816-821. doi: 10.1126/science. 1225829
    • (2012) Science , vol.337 , Issue.6096 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 19
    • 34249064632 scopus 로고    scopus 로고
    • Epstein-Barr Virus and Its Replication
    • In P. Howley & D. Knipe (Eds.). Philadelphia: Lippincott Williams & Wilkins
    • Kieff, E., & Rickinson, A. (2007). Epstein-Barr Virus and Its Replication. In P. Howley & D. Knipe (Eds.), Fields Virology (pp. 2603-2654). Philadelphia: Lippincott Williams & Wilkins
    • (2007) Fields Virology , pp. 2603-2654
    • Kieff, E.1    Rickinson, A.2
  • 20
    • 84901834420 scopus 로고    scopus 로고
    • Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins
    • Kim, S., Kim, D., Cho, S.W., Kim, J., & Kim, J. S. (2014). Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome Research, 24(6), 1012-1019. doi: 10.1101/gr.171322 .113
    • (2014) Genome Research , vol.24 , Issue.6 , pp. 1012-1019
    • Kim, S.1    Kim, D.2    Cho, S.W.3    Kim, J.4    Kim, J.S.5
  • 21
    • 84957590341 scopus 로고    scopus 로고
    • Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9
    • Korkmaz, G., Lopes, R., Ugalde, A. P., Nevedomskaya, E., Han, R., Myacheva, K., Agami, R. (2016). Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9. Nature Biotechnology, 34(2), 192-198. doi: 10.1038/nbt.3450. Retrieved from https://www.nature .com/nbt/journal/v34/n2/abs/nbt.3450.htmlsupplementary-information
    • (2016) Nature Biotechnology , vol.34 , Issue.2 , pp. 192-198
    • Korkmaz, G.1    Lopes, R.2    Ugalde, A.P.3    Nevedomskaya, E.4    Han, R.5    Myacheva, K.6    Agami, R.7
  • 26
    • 84955619179 scopus 로고    scopus 로고
    • The EBNA3 family of Epstein-Barr virus nuclear proteins associates with the USP46/USP12 deubiquitination complexes to regulate lymphoblastoid cell line growth
    • Ohashi, M., Holthaus, A. M., Calderwood, M. A., Lai, C. Y., Krastins, B., Sarracino, D., & Johannsen, E. (2015). The EBNA3 family of Epstein-Barr virus nuclear proteins associates with the USP46/USP12 deubiquitination complexes to regulate lymphoblastoid cell line growth. PLoS Pathogens, 11(4), e1004822. doi: 10.1371/journal.ppat.1004822
    • (2015) PLoS Pathogens , vol.11 , Issue.4
    • Ohashi, M.1    Holthaus, A.M.2    Calderwood, M.A.3    Lai, C.Y.4    Krastins, B.5    Sarracino, D.6    Johannsen, E.7
  • 27
    • 0015923136 scopus 로고
    • Selective transformation of B lymphocytes by E.B. virus
    • Pattengale, P., Smith, R., & Gerber, P. (1973). Selective transformation of B lymphocytes by E.B. virus. The Lancet, 302(7820), 93-94. doi: https://doi.org/10.1016/S0140-6736(73) 93286-8
    • (1973) The Lancet , vol.302 , Issue.7820 , pp. 93-94
    • Pattengale, P.1    Smith, R.2    Gerber, P.3
  • 29
    • 84900314611 scopus 로고    scopus 로고
    • CRISPR-Cas systems for editing, regulating and targeting genomes
    • Sander, J. D., & Joung, J. K. (2014). CRISPR-Cas systems for editing, regulating and targeting genomes. Nature Biotechnology, 32(4), 347-355. doi: 10.1038/nbt.2842. Retrieved from https://www.nature.com/nbt/journal/v32/n4/abs/nbt.2842.html-supplementary-information
    • (2014) Nature Biotechnology , vol.32 , Issue.4 , pp. 347-355
    • Sander, J.D.1    Joung, J.K.2
  • 31
    • 84943171338 scopus 로고    scopus 로고
    • Aglobal reference for human genetic variation
    • The Genomes Project,C. (2015).Aglobal reference for human genetic variation. Nature, 526(7571), 68-74. doi: 10.1038/nature15393. Retrieved from https://www.nature.com/nature/journal/v526/n7571/abs/nature15393.html-supplement ary-information
    • (2015) Nature , vol.526 , Issue.7571 , pp. 68-74
  • 33
  • 34
    • 84939603800 scopus 로고    scopus 로고
    • Rapid and efficient one-step generation of paired gRNA CRISPR-Cas9 libraries
    • Vidigal, J. A., & Ventura, A. (2015). Rapid and efficient one-step generation of paired gRNA CRISPR-Cas9 libraries. Nature Communications, 6. doi: 10.1038/ncomms9083
    • (2015) Nature Communications , vol.6
    • Vidigal, J.A.1    Ventura, A.2
  • 36
    • 84954214717 scopus 로고    scopus 로고
    • Biology and applications of CRISPR systems: Harnessing nature's toolbox for genome engineering
    • Wright, A. V., Nunez, J. K., & Doudna, J. A. (2016). Biology and applications of CRISPR systems: Harnessing nature's toolbox for genome engineering. Cell, 164(1-2), 29-44. doi: 10.1016/j.cell.2015.12.035
    • (2016) Cell , vol.164 , Issue.1-2 , pp. 29-44
    • Wright, A.V.1    Nunez, J.K.2    Doudna, J.A.3
  • 37
    • 85003712738 scopus 로고    scopus 로고
    • Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library
    • Zhu, S., Li, W., Liu, J., Chen, C.-H., Liao, Q., Xu, P., Wei, W. (2016). Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library. Nature Biotechnology, 34(12), 1279-1286. doi: 10.1038/nbt.3715. Retrieved from https://www.nature.com/nbt/journal/v34/n12/abs/nbt.3715.html-supplementaryinformation
    • (2016) Nature Biotechnology , vol.34 , Issue.12 , pp. 1279-1286
    • Zhu, S.1    Li, W.2    Liu, J.3    Chen, C.-H.4    Liao, Q.5    Xu, P.6    Wei, W.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.