메뉴 건너뛰기




Volumn 46, Issue D1, 2018, Pages D428-D434

The eukaryotic linear motif resource - 2018 update

(21)  Gouw, Marc a   Michael, Sushama a   Sámano Sánchez, Hugo a   Kumar, Manjeet a   Zeke, András b   Lang, Benjamin a   Bely, Benoit c   Chemes, Lucía B d,e,f   Davey, Norman E g   Deng, Ziqi a   Diella, Francesca a   Gürth, Clara Marie h   Huber, Ann Kathrin h   Kleinsorg, Stefan h   Schlegel, Lara S h   Palopoli, Nicolás i   Roey, Kim V a   Altenberg, Brigitte a   Reményi, Attila b   Dinkel, Holger a,j   more..


Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN KINASE; PROTEIN KINASE KINOME; UNCLASSIFIED DRUG; PROTEIN; PROTEIN BINDING;

EID: 85040933008     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx1077     Document Type: Article
Times cited : (155)

References (50)
  • 2
    • 84902446852 scopus 로고    scopus 로고
    • Short linear motifs: Ubiquitous and functionally diverse protein interaction modules directing cell regulation
    • Van Roey, K., Uyar, B., Weatheritt, R. J., Dinkel, H., Seiler, M., Budd, A., Gibson, T. J. and Davey, N. E. (2014) Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation. Chem. Rev., 114, 6733-6778.
    • (2014) Chem. Rev. , vol.114 , pp. 6733-6778
    • Van Roey, K.1    Uyar, B.2    Weatheritt, R.J.3    Dinkel, H.4    Seiler, M.5    Budd, A.6    Gibson, T.J.7    Davey, N.E.8
  • 3
    • 49549122501 scopus 로고    scopus 로고
    • Understanding eukaryotic linear motifs and their role in cell signaling and regulation
    • Diella, F. (2008) Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Front. Biosci., 13, 6580-6603.
    • (2008) Front. Biosci. , vol.13 , pp. 6580-6603
    • Diella, F.1
  • 5
    • 84876158670 scopus 로고    scopus 로고
    • The switches ELM resource: A compendium of conditional regulatory interaction interfaces
    • Van Roey, K., Dinkel, H., Weatheritt, R. J., Gibson, T. J. and Davey, N. E. (2013) The switches. ELM resource: a compendium of conditional regulatory interaction interfaces. Sci. Signal., 6, rs7.
    • (2013) Sci. Signal. , vol.6 , pp. rs7
    • Van Roey, K.1    Dinkel, H.2    Weatheritt, R.J.3    Gibson, T.J.4    Davey, N.E.5
  • 7
    • 84907033567 scopus 로고    scopus 로고
    • Proteome-wide analysis of human disease mutations in short linear motifs: Neglected players in cancer? Mol
    • Uyar, B., Weatheritt, R. J., Dinkel, H., Davey, N. E. and Gibson, T. J. (2014) Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? Mol. Biosyst., 10, 2626-2642.
    • (2014) Biosyst. , vol.10 , pp. 2626-2642
    • Uyar, B.1    Weatheritt, R.J.2    Dinkel, H.3    Davey, N.E.4    Gibson, T.J.5
  • 9
    • 84904469894 scopus 로고    scopus 로고
    • A million peptide motifs for the molecular biologist
    • Tompa, P., Davey, N. E., Gibson, T. J. and Babu, M. M. (2014) A million peptide motifs for the molecular biologist. Mol. Cell, 55, 161-169.
    • (2014) Mol. Cell , vol.55 , pp. 161-169
    • Tompa, P.1    Davey, N.E.2    Gibson, T.J.3    Babu, M.M.4
  • 10
    • 0042622252 scopus 로고    scopus 로고
    • ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins
    • Puntervoll, P. (2003) ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res., 31, 3625-3630.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3625-3630
    • Puntervoll, P.1
  • 14
    • 85016166168 scopus 로고    scopus 로고
    • Expansion of the gene ontology knowledgebase and resources
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium (2017) Expansion of the Gene Ontology knowledgebase and resources. Nucleic Acids Res., 45, D331-D338.
    • (2017) Nucleic Acids Res. , vol.45 , pp. D331-D338
  • 19
    • 0042622240 scopus 로고    scopus 로고
    • GlobPlot: Exploring protein sequences for globularity and disorder
    • Linding, R., Russell, R. B., Neduva, V. and Gibson, T. J. (2003) GlobPlot: exploring protein sequences for globularity and disorder. Nucleic Acids Res., 31, 3701-3708.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3701-3708
    • Linding, R.1    Russell, R.B.2    Neduva, V.3    Gibson, T.J.4
  • 20
    • 24044538903 scopus 로고    scopus 로고
    • IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
    • Dosztányi, Z., Csizmok, V., Tompa, P. and Simon, I. (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics, 21, 3433-3434.
    • (2005) Bioinformatics , vol.21 , pp. 3433-3434
    • Dosztányi, Z.1    Csizmok, V.2    Tompa, P.3    Simon, I.4
  • 22
    • 84946060416 scopus 로고    scopus 로고
    • SMART: Recent updates, new developments and status in 2015
    • Letunic, I., Doerks, T. and Bork, P. (2015) SMART: recent updates, new developments and status in 2015. Nucleic Acids Res., 43, D257-D260.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D257-D260
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 24
    • 85004049538 scopus 로고    scopus 로고
    • ProViz-a web-based visualization tool to investigate the functional and evolutionary features of protein sequences
    • Jehl, P., Manguy, J., Shields, D. C., Higgins, D. G. and Davey, N. E. (2016) ProViz-a web-based visualization tool to investigate the functional and evolutionary features of protein sequences. Nucleic Acids Res., 44, W11-W15.
    • (2016) Nucleic Acids Res. , vol.44 , pp. W11-W15
    • Jehl, P.1    Manguy, J.2    Shields, D.C.3    Higgins, D.G.4    Davey, N.E.5
  • 25
    • 85023166089 scopus 로고    scopus 로고
    • SLiMSearch: A framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions
    • Krystkowiak, I. and Davey, N. E. (2017) SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions. Nucleic Acids Res., 45, W464-W469.
    • (2017) Nucleic Acids Res. , vol.45 , pp. W464-W469
    • Krystkowiak, I.1    Davey, N.E.2
  • 30
    • 85029443381 scopus 로고    scopus 로고
    • Exploring short linear motifs using the ELM database and tools
    • In: Bateman, A, Draghici, S, Khurana, E, Orchard, S and Pearson, WR (eds). John Wiley & Sons, Inc., Hoboken
    • Gouw, M., Sámano-Sánchez, H., Van Roey, K., Diella, F., Gibson, T. J. and Dinkel, H. (2017) Exploring short linear motifs using the ELM database and tools. In: Bateman, A, Draghici, S, Khurana, E, Orchard, S and Pearson, WR (eds). Current Protocols in Bioinformatics. John Wiley & Sons, Inc., Hoboken, pp. 8. 22. 1-8. 22. 35.
    • (2017) Current Protocols in Bioinformatics , pp. 8221-82235
    • Gouw, M.1    Sámano-Sánchez, H.2    Van Roey, K.3    Diella, F.4    Gibson, T.J.5    Dinkel, H.6
  • 31
    • 84963980075 scopus 로고    scopus 로고
    • How pathogens use linear motifs to perturb host cell networks
    • Via, A., Uyar, B., Brun, C. and Zanzoni, A. (2015) How pathogens use linear motifs to perturb host cell networks. Trends Biochem. Sci., 40, 36-48.
    • (2015) Trends Biochem. Sci. , vol.40 , pp. 36-48
    • Via, A.1    Uyar, B.2    Brun, C.3    Zanzoni, A.4
  • 32
    • 84893672733 scopus 로고    scopus 로고
    • Potential of known and short prokaryotic protein motifs as a basis for novel peptide-based antibacterial therapeutics: A computational survey
    • Ruhanen, H., Hurley, D., Ghosh, A., O'Brien, K. T., Johnston, C. R. and Shields, D. C. (2014) Potential of known and short prokaryotic protein motifs as a basis for novel peptide-based antibacterial therapeutics: a computational survey. Front. Microbiol., 5, 1-18.
    • (2014) Front. Microbiol. , vol.5 , pp. 1-18
    • Ruhanen, H.1    Hurley, D.2    Ghosh, A.3    O'brien, K.T.4    Johnston, C.R.5    Shields, D.C.6
  • 33
    • 36749011295 scopus 로고    scopus 로고
    • Structural insights into the enzymatic mechanism of the pathogenic MAPK phosphothreonine lyase
    • Zhu, Y., Li, H., Long, C., Hu, L., Xu, H., Liu, L., Chen, S., Wang, D. C. and Shao, F. (2007) Structural insights into the enzymatic mechanism of the pathogenic MAPK phosphothreonine lyase. Mol. Cell, 28, 899-913.
    • (2007) Mol. Cell , vol.28 , pp. 899-913
    • Zhu, Y.1    Li, H.2    Long, C.3    Hu, L.4    Xu, H.5    Liu, L.6    Chen, S.7    Wang, D.C.8    Shao, F.9
  • 34
    • 33847154642 scopus 로고    scopus 로고
    • The phosphothreonine lyase activity of a bacterial type III effector family
    • Li, H., Xu, H., Zhou, Y., Zhang, J., Long, C., Li, S., Chen, S., Zhou, J.-M. and Shao, F. (2007) The phosphothreonine lyase activity of a bacterial type III effector family. Science, 315, 1000-1003.
    • (2007) Science , vol.315 , pp. 1000-1003
    • Li, H.1    Xu, H.2    Zhou, Y.3    Zhang, J.4    Long, C.5    Li, S.6    Chen, S.7    Zhou, J.-M.8    Shao, F.9
  • 36
    • 84867386417 scopus 로고    scopus 로고
    • Enterohaemorrhagic escherichia coli exploits a tryptophan switch to hijack host F-Actin assembly
    • Aitio, O., Hellman, M., Skehan, B., Kesti, T., Leong, J. M., Saksela, K. and Permi, P. (2012) Enterohaemorrhagic escherichia coli exploits a tryptophan switch to hijack host F-Actin assembly. Structure, 20, 1692-1703.
    • (2012) Structure , vol.20 , pp. 1692-1703
    • Aitio, O.1    Hellman, M.2    Skehan, B.3    Kesti, T.4    Leong, J.M.5    Saksela, K.6    Permi, P.7
  • 37
    • 0037423309 scopus 로고    scopus 로고
    • Attenuation of Helicobacter pylori CagA?SHP-2 Signaling by Interaction between CagA and C-terminal Src Kinase
    • Tsutsumi, R., Higashi, H., Higuchi, M., Okada, M. and Hatakeyama, M. (2003) Attenuation of Helicobacter pylori CagA?SHP-2 Signaling by Interaction between CagA and C-terminal Src Kinase. J. Biol. Chem., 278, 3664-3670.
    • (2003) J. Biol. Chem. , vol.278 , pp. 3664-3670
    • Tsutsumi, R.1    Higashi, H.2    Higuchi, M.3    Okada, M.4    Hatakeyama, M.5
  • 38
    • 84903956934 scopus 로고    scopus 로고
    • The Haemophilus ducreyi LspA1 protein inhibits phagocytosis by using a new mechanism involving activation of C-terminal Src kinase
    • Dodd, D. A., Worth, R. G., Rosen, M. K., Grinstein, S., van Oers, N. S. C. and Hansen, E. J. (2014) The Haemophilus ducreyi LspA1 protein inhibits phagocytosis by using a new mechanism involving activation of C-terminal Src kinase. Mbio, 5, doi:10. 1128/mBio. 01178-14.
    • (2014) Mbio , vol.5
    • Dodd, D.A.1    Worth, R.G.2    Rosen, M.K.3    Grinstein, S.4    Van Oers, N.S.C.5    Hansen, E.J.6
  • 39
    • 84920019093 scopus 로고    scopus 로고
    • Redox and Src family kinase signaling control leukocyte wound attraction and neutrophil reverse migration
    • Tauzin, S., Starnes, T. W., Becker, F. B., ying Lam, P. and Huttenlocher, A. (2014) Redox and Src family kinase signaling control leukocyte wound attraction and neutrophil reverse migration. J. Cell Biol., 207, 589-598.
    • (2014) J. Cell Biol. , vol.207 , pp. 589-598
    • Tauzin, S.1    Starnes, T.W.2    Becker, F.B.3    Ying Lam, P.4    Huttenlocher, A.5
  • 40
    • 20044363664 scopus 로고    scopus 로고
    • Src and Syk kinases: Key regulators of phagocytic cell activation
    • Berton, G., Mócsai, A. and Lowell, C. A. (2005) Src and Syk kinases: key regulators of phagocytic cell activation. Trends Immunol., 26, 208-214.
    • (2005) Trends Immunol. , vol.26 , pp. 208-214
    • Berton, G.1    Mocsai, A.2    Lowell, C.A.3
  • 42
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 45
    • 84983050252 scopus 로고    scopus 로고
    • JNK Signaling: Regulation and functions based on complex proteinprotein partnerships
    • Zeke, A., Misheva, M., Remenyi, A. and Bogoyevitch, M. A. (2016) JNK Signaling: regulation and functions based on complex proteinprotein partnerships. Microbiol. Mol. Biol. Rev., 80, 793-835.
    • (2016) Microbiol. Mol. Biol. Rev. , vol.80 , pp. 793-835
    • Zeke, A.1    Misheva, M.2    Remenyi, A.3    Bogoyevitch, M.A.4
  • 47
    • 2942615282 scopus 로고    scopus 로고
    • Polo-like kinases and the orchestration of cell division
    • Barr, F. A., Silljé, H. H. W. and Nigg, E. A. (2004) Polo-like kinases and the orchestration of cell division. Nat. Rev. Mol. Cell Biol., 5, 429-441.
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 429-441
    • Barr, F.A.1    Silljé, H.H.W.2    Nigg, E.A.3
  • 49
    • 13244284602 scopus 로고    scopus 로고
    • Structure and function of Polo-like kinases
    • Lowery, D. M., Lim, D. and Yaffe, M. B. (2005) Structure and function of Polo-like kinases. Oncogene, 24, 248-259.
    • (2005) Oncogene , vol.24 , pp. 248-259
    • Lowery, D.M.1    Lim, D.2    Yaffe, M.B.3
  • 50
    • 84941702187 scopus 로고    scopus 로고
    • QSLiMFinder: Improved short linear motif prediction using specific query protein data
    • Palopoli, N., Lythgow, K. T. and Edwards, R. J. (2015) QSLiMFinder: improved short linear motif prediction using specific query protein data. Bioinformatics, 31, 2284-2293.
    • (2015) Bioinformatics , vol.31 , pp. 2284-2293
    • Palopoli, N.1    Lythgow, K.T.2    Edwards, R.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.