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Volumn 26, Issue 18, 2017, Pages 3639-3650

Trans-ethnic meta-regression of genome-wide association studies accounting for ancestry increases power for discovery and improves fine-mapping resolution

Author keywords

[No Author keywords available]

Indexed keywords

ANCESTRY GROUP; ARTICLE; ETHNIC GROUP; FALSE POSITIVE RESULT; GENE FREQUENCY; GENE LOCUS; GENE MAPPING; GENETIC SUSCEPTIBILITY; GENETIC VARIATION; GENOME-WIDE ASSOCIATION STUDY; HUMAN; KIDNEY FUNCTION; LINEAR REGRESSION ANALYSIS; NON INSULIN DEPENDENT DIABETES MELLITUS; POPULATION GENETICS; PRIORITY JOURNAL; REGRESSION ANALYSIS; ALLELE; CAUCASIAN; DNA SEQUENCE; GENE LINKAGE DISEQUILIBRIUM; GENETICS; META ANALYSIS; PROCEDURES; SINGLE NUCLEOTIDE POLYMORPHISM; SOFTWARE;

EID: 85040673553     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddx280     Document Type: Article
Times cited : (145)

References (43)
  • 1
    • 84879655915 scopus 로고    scopus 로고
    • High-trans-ethnic replicability of GWAS results implies common causal variants
    • Marigorta, U.L. and Navarro, A. (2013) High-trans-ethnic replicability of GWAS results implies common causal variants. PLoS Genet., 9, e1003566
    • (2013) PLoS Genet , vol.9
    • Marigorta, U.L.1    Navarro, A.2
  • 2
    • 84920807370 scopus 로고    scopus 로고
    • Trans-ethnic genome-wide association studies: advantages and challenges of mapping in diverse populations
    • Li, Y.R. and Keating, B.J. (2014) Trans-ethnic genome-wide association studies: advantages and challenges of mapping in diverse populations. Genome Med., 6, 91
    • (2014) Genome Med , vol.6 , pp. 91
    • Li, Y.R.1    Keating, B.J.2
  • 3
    • 84862775448 scopus 로고    scopus 로고
    • Consistency of genome-wide associations across major ancestral groups
    • Ntzani, E.E., Liberopoulos, G., Manolio, T.A. and Ioannidis, J.P.A. (2012) Consistency of genome-wide associations across major ancestral groups. Hum. Genet., 131, 1057-1071
    • (2012) Hum. Genet , vol.131 , pp. 1057-1071
    • Ntzani, E.E.1    Liberopoulos, G.2    Manolio, T.A.3    Ioannidis, J.P.A.4
  • 5
    • 73149100820 scopus 로고    scopus 로고
    • Leveraging genetic variability across populations for the identification of causal variants
    • Zaitlen, N., Pasaniuc, B., Gur, T., Ziv, E. and Halperin, E. (2010) Leveraging genetic variability across populations for the identification of causal variants. Am. J. Hum. Genet., 86, 23-33
    • (2010) Am. J. Hum. Genet , vol.86 , pp. 23-33
    • Zaitlen, N.1    Pasaniuc, B.2    Gur, T.3    Ziv, E.4    Halperin, E.5
  • 6
    • 84858340640 scopus 로고    scopus 로고
    • A statistical method for region-based meta-analysis of genome-wide association studies in genetically diverse populations
    • Wang, X., Liu, X., Sim, X., Xu, H., Khor, C.-C., Ong, R.T.-H., Tay, W.-T., Suo, C., Poh, W.-T., Ng, D.P.-K. et al. (2012) A statistical method for region-based meta-analysis of genome-wide association studies in genetically diverse populations. Eur. J. Hum. Genet., 20, 469-475
    • (2012) Eur. J. Hum. Genet , vol.20 , pp. 469-475
    • Wang, X.1    Liu, X.2    Sim, X.3    Xu, H.4    Khor, C.-C.5    Ong, R.T.-H.6    Tay, W.-T.7    Suo, C.8    Poh, W.-T.9    Ng, D.P.-K.10
  • 7
    • 79955860273 scopus 로고    scopus 로고
    • Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies
    • Han, B. and Eskin, E. (2011) Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies. Am. J. Hum. Genet., 88, 586-598
    • (2011) Am. J. Hum. Genet , vol.88 , pp. 586-598
    • Han, B.1    Eskin, E.2
  • 8
    • 82355170584 scopus 로고    scopus 로고
    • Transethnic meta-analysis of genomewide association studies
    • Morris, A.P. (2011) Transethnic meta-analysis of genomewide association studies. Genet. Epidemiol., 35, 809-822
    • (2011) Genet. Epidemiol , vol.35 , pp. 809-822
    • Morris, A.P.1
  • 10
    • 84938982145 scopus 로고    scopus 로고
    • Leveraging functional annotation data in trans-ethnic fine-mapping studies
    • Kichaev, G. and Pasaniuc, B. (2015) Leveraging functional annotation data in trans-ethnic fine-mapping studies. Am. J. Hum. Genet., 97, 260-271
    • (2015) Am. J. Hum. Genet , vol.97 , pp. 260-271
    • Kichaev, G.1    Pasaniuc, B.2
  • 13
    • 84943171338 scopus 로고    scopus 로고
    • A global reference for human genetic variation
    • The 1000 Genomes Project Consortium (2015) A global reference for human genetic variation. Nature, 526, 68-74
    • (2015) Nature , vol.526 , pp. 68-74
  • 14
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • The 1000 Genomes Project Consortium (2012) An integrated map of genetic variation from 1, 092 human genomes. Nature, 491, 56-65
    • (2012) Nature , vol.491 , pp. 56-65
  • 18
    • 67349176068 scopus 로고    scopus 로고
    • Genetics in geographically structured populations: defining, estimating and interpreting F(ST)
    • Holsinger, K.E. and Weir, B.S. (2009) Genetics in geographically structured populations: defining, estimating and interpreting F(ST). Nat. Rev. Genet., 10, 639-650
    • (2009) Nat. Rev. Genet , vol.10 , pp. 639-650
    • Holsinger, K.E.1    Weir, B.S.2
  • 20
    • 84970015769 scopus 로고    scopus 로고
    • FINEMAP: efficient variable selection using summary data from genome-wide association studies
    • Benner, C., Spencer, C.A., Havulinna, A.S., Salomaa, V., Ripatti, S. and Pirinen, M. (2016) FINEMAP: efficient variable selection using summary data from genome-wide association studies. Bioinformatics, 32, 1493-1501
    • (2016) Bioinformatics , vol.32 , pp. 1493-1501
    • Benner, C.1    Spencer, C.A.2    Havulinna, A.S.3    Salomaa, V.4    Ripatti, S.5    Pirinen, M.6
  • 22
    • 84943805735 scopus 로고    scopus 로고
    • Strategies for fine-mapping complex traits
    • Spain, S.L. and Barrett, J.C. (2015) Strategies for fine-mapping complex traits. Hum. Mol. Genet., 24, R111-R119
    • (2015) Hum. Mol. Genet , vol.24 , pp. R111-R119
    • Spain, S.L.1    Barrett, J.C.2
  • 23
    • 84862832570 scopus 로고    scopus 로고
    • Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits
    • Yang, J., Ferreira, T., Morris, A.P., Medland, S.E., Genetic Investigation of Anthropometric Traits (GIANT) Consortium, Diabetes Genetics Replication and Meta-analysis (DIAGRAM) Consortium, Madden, P.A.F., Heath, A.C., Martin, N.G., Montgomery, G.W. et al. (2012) Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits. Nat. Genet., 44, 369-375
    • (2012) Nat. Genet , vol.44 , pp. 369-375
    • Yang, J.1    Ferreira, T.2    Morris, A.P.3    Medland, S.E.4    Madden, P.A.F.5    Heath, A.C.6    Martin, N.G.7    Montgomery, G.W.8
  • 27
    • 84943749591 scopus 로고    scopus 로고
    • Integration of multiethnic fine-mapping and genomic annotation to prioritize candidate functional SNPs at prostate cancer susceptibility regions
    • Han, Y., Hazelett, D.J., Wiklund, F., Schumacher, F.R., Stram, D.O., Berndt, S.I., Wang, Z., Rand, K.A., Hoover, R.N., Machiela, M.J. et al. (2015) Integration of multiethnic fine-mapping and genomic annotation to prioritize candidate functional SNPs at prostate cancer susceptibility regions. Hum. Mol. Genet., 24, 5603-5618
    • (2015) Hum. Mol. Genet , vol.24 , pp. 5603-5618
    • Han, Y.1    Hazelett, D.J.2    Wiklund, F.3    Schumacher, F.R.4    Stram, D.O.5    Berndt, S.I.6    Wang, Z.7    Rand, K.A.8    Hoover, R.N.9    Machiela, M.J.10
  • 31
    • 85015585159 scopus 로고    scopus 로고
    • Fine mapping of QT interval regions in global populations refines previously identified QT interval loci and identifies signals unique to African and Hispanic descent populations
    • Avery, C.L., Wassel, C.L., Richard, M.A., Highland, H.M., Bien, S., Zubair, N., Soliman, E.Z., Fornage, M., Bielinski, S.J., Tao, R. et al. (2017) Fine mapping of QT interval regions in global populations refines previously identified QT interval loci and identifies signals unique to African and Hispanic descent populations. Heart Rhythm, 14, 572-580
    • (2017) Heart Rhythm , vol.14 , pp. 572-580
    • Avery, C.L.1    Wassel, C.L.2    Richard, M.A.3    Highland, H.M.4    Bien, S.5    Zubair, N.6    Soliman, E.Z.7    Fornage, M.8    Bielinski, S.J.9    Tao, R.10
  • 32
    • 85017161994 scopus 로고    scopus 로고
    • Trans-ethnic fine-mapping of genetic loci for body mass index in the diverse ancestral populations of the Population Architecture using Genomics and Epidemiology (PAGE) Study reveals evidence for multiple signals at established loci
    • Fernández-Rhodes, L., Gong, J., Haessler, J., Franceschini, N., Graff, M., Nishimura, K.K., Wang, Y., Highland, H.M., Yoneyama, S., Bush, W.S. et al. (2017) Trans-ethnic fine-mapping of genetic loci for body mass index in the diverse ancestral populations of the Population Architecture using Genomics and Epidemiology (PAGE) Study reveals evidence for multiple signals at established loci. Hum. Genet., 136, 771-800
    • (2017) Hum. Genet , vol.136 , pp. 771-800
    • Fernández-Rhodes, L.1    Gong, J.2    Haessler, J.3    Franceschini, N.4    Graff, M.5    Nishimura, K.K.6    Wang, Y.7    Highland, H.M.8    Yoneyama, S.9    Bush, W.S.10
  • 33
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz, G. (1978) Estimating the dimension of a model. Ann. Statist., 6, 461-464
    • (1978) Ann. Statist , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 36
    • 79961193174 scopus 로고    scopus 로고
    • HAPGEN2: simulation of multiple disease SNPs
    • Zhan, S., Marchini, J. and Donnelly, P. (2011) HAPGEN2: simulation of multiple disease SNPs. Bioinformatics, 27, 2304-2305
    • (2011) Bioinformatics , vol.27 , pp. 2304-2305
    • Zhan, S.1    Marchini, J.2    Donnelly, P.3
  • 37
    • 84864417548 scopus 로고    scopus 로고
    • Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
    • Howie, B., Fuchsberger, C., Stephens, M., Marchini, J. and Abecasis, G.R. (2012) Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nat. Genet., 44, 955-959
    • (2012) Nat. Genet , vol.44 , pp. 955-959
    • Howie, B.1    Fuchsberger, C.2    Stephens, M.3    Marchini, J.4    Abecasis, G.R.5
  • 38
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie, B.N., Donnelly, P. and Marchini, J. (2009) A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet, 5, e1000529
    • (2009) PLoS Genet , vol.5
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 39
    • 77953808087 scopus 로고    scopus 로고
    • Genotype imputation for genome-wide association studies
    • Marchini, J. and Howie, B. (2010) Genotype imputation for genome-wide association studies. Nat. Rev. Genet., 11, 499-511
    • (2010) Nat. Rev. Genet , vol.11 , pp. 499-511
    • Marchini, J.1    Howie, B.2
  • 41
    • 34547782270 scopus 로고    scopus 로고
    • Bayesian measure of the probability of false discovery in genetic epidemiology studies
    • Wakefield, J.A. (2007) Bayesian measure of the probability of false discovery in genetic epidemiology studies. Am. J. Hum. Genet., 81, 208-227
    • (2007) Am. J. Hum. Genet , vol.81 , pp. 208-227
    • Wakefield, J.A.1
  • 42
    • 0036176161 scopus 로고    scopus 로고
    • K/DOQI clinical practice guidelines for chronic kidney disease: evaluation, classification, and stratification
    • National Kidney Foundation (2002) K/DOQI clinical practice guidelines for chronic kidney disease: evaluation, classification, and stratification. Am. J. Kidney Dis., 39, S1-S266
    • (2002) Am. J. Kidney Dis , vol.39 , pp. S1-S266
  • 43
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin, B. and Roeder, K. (1999) Genomic control for association studies. Biometrics, 55, 997-1004
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2


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