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Volumn 99, Issue 3, 2016, Pages 636-646

Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity

(38)  Mahajan, Anubha a   Rodan, Aylin R b   Le, Thu H c   Gaulton, Kyle J d   Haessler, Jeffrey e   Stilp, Adrienne M f   Kamatani, Yoichiro g   Zhu, Gu h   Sofer, Tamar f   Puri, Sanjana b   Schellinger, Jeffrey N b   Chu, Pei Lun c   Cechova, Sylvia c   van Zuydam, Natalie a   Arnlov, Johan i,j   Flessner, Michael F k   Giedraitis, Vilmantas l   Heath, Andrew C m   Kubo, Michiaki g   Larsson, Anders i   more..


Author keywords

[No Author keywords available]

Indexed keywords

ALMS1 PROTEIN; BCAS3 PROTEIN; CPS1 PROTEIN; DAB2 C9 PROTEIN; DCDC5 MPPED2 PROTEIN; DEOXYRIBONUCLEASE I; DROSOPHILA PROTEIN; GCKR PROTEIN; LRP2 PROTEIN; NFATC1 PROTEIN; ORGANIC CATION TRANSPORTER 2; PDILT UMOD PROTEIN; PHTF2 PROTEIN; PIP5K1B PROTEIN; PRKAG2 PROTEIN; RGS14 PROTEIN; SHROOM3 PROTEIN; SLC43A1 PROTEIN; SODIUM CHLORIDE; SPATA5L1 GATM PROTEIN; TFDP2 PROTEIN; UNCLASSIFIED DRUG; UNCX PROTEIN; VASCULOTROPIN A; WDR72 PROTEIN; NFATC1 PROTEIN, HUMAN; NFATC1 PROTEIN, MOUSE; RGS PROTEIN; RGS14 PROTEIN, HUMAN; RGS14 PROTEIN, MOUSE; SLC34A1 PROTEIN, HUMAN; SODIUM PHOSPHATE COTRANSPORTER 2A; TRANSCRIPTION FACTOR NFAT;

EID: 85020917020     PISSN: 00029297     EISSN: 15376605     Source Type: Journal    
DOI: 10.1016/j.ajhg.2016.07.012     Document Type: Article
Times cited : (57)

References (55)
  • 1
    • 84855854046 scopus 로고    scopus 로고
    • Chronic kidney disease
    • Levey, A.S., Coresh, J., Chronic kidney disease. Lancet 379 (2012), 165–180.
    • (2012) Lancet , vol.379 , pp. 165-180
    • Levey, A.S.1    Coresh, J.2
  • 2
    • 84930158140 scopus 로고    scopus 로고
    • United States Renal Data System public health surveillance of chronic kidney disease and end-stage renal disease
    • Collins, A.J., Foley, R.N., Gilbertson, D.T., Chen, S.-C., United States Renal Data System public health surveillance of chronic kidney disease and end-stage renal disease. Kidney Int Suppl (2011) 5 (2015), 2–7.
    • (2015) Kidney Int Suppl (2011) , vol.5 , pp. 2-7
    • Collins, A.J.1    Foley, R.N.2    Gilbertson, D.T.3    Chen, S.-C.4
  • 3
    • 34047226048 scopus 로고    scopus 로고
    • Longitudinal study of racial and ethnic differences in developing end-stage renal disease among aged medicare beneficiaries
    • Xue, J.L., Eggers, P.W., Agodoa, L.Y., Foley, R.N., Collins, A.J., Longitudinal study of racial and ethnic differences in developing end-stage renal disease among aged medicare beneficiaries. J. Am. Soc. Nephrol. 18 (2007), 1299–1306.
    • (2007) J. Am. Soc. Nephrol. , vol.18 , pp. 1299-1306
    • Xue, J.L.1    Eggers, P.W.2    Agodoa, L.Y.3    Foley, R.N.4    Collins, A.J.5
  • 5
    • 84859224378 scopus 로고    scopus 로고
    • Genome-wide association and functional follow-up reveals new loci for kidney function
    • Pattaro, C., Köttgen, A., Teumer, A., Garnaas, M., Böger, C.A., Fuchsberger, C., Olden, M., Chen, M.-H., Tin, A., Taliun, D., et al. CARDIoGRAM Consortium ICBP Consortium CARe Consortium, Wellcome Trust Case Control Consortium 2 (WTCCC2). Genome-wide association and functional follow-up reveals new loci for kidney function. PLoS Genet., 8, 2012, e1002584.
    • (2012) PLoS Genet. , vol.8 , pp. e1002584
    • Pattaro, C.1    Köttgen, A.2    Teumer, A.3    Garnaas, M.4    Böger, C.A.5    Fuchsberger, C.6    Olden, M.7    Chen, M.-H.8    Tin, A.9    Taliun, D.10
  • 6
    • 84864413706 scopus 로고    scopus 로고
    • Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations
    • Okada, Y., Sim, X., Go, M.J., Wu, J.Y., Gu, D., Takeuchi, F., Takahashi, A., Maeda, S., Tsunoda, T., Chen, P., et al. KidneyGen Consortium CKDGen Consortium, GUGC consortium. Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. Nat. Genet. 44 (2012), 904–909.
    • (2012) Nat. Genet. , vol.44 , pp. 904-909
    • Okada, Y.1    Sim, X.2    Go, M.J.3    Wu, J.Y.4    Gu, D.5    Takeuchi, F.6    Takahashi, A.7    Maeda, S.8    Tsunoda, T.9    Chen, P.10
  • 8
    • 84957605211 scopus 로고    scopus 로고
    • Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function
    • Pattaro, C., Teumer, A., Gorski, M., Chu, A.Y., Li, M., Mijatovic, V., Garnaas, M., Tin, A., Sorice, R., Li, Y., et al. ICBP Consortium AGEN Consortium CARDIOGRAM CHARGe-Heart Failure Group, ECHOGen Consortium. Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function. Nat. Commun., 7, 2016, 10023.
    • (2016) Nat. Commun. , vol.7 , pp. 10023
    • Pattaro, C.1    Teumer, A.2    Gorski, M.3    Chu, A.Y.4    Li, M.5    Mijatovic, V.6    Garnaas, M.7    Tin, A.8    Sorice, R.9    Li, Y.10
  • 10
    • 84856478855 scopus 로고    scopus 로고
    • A linear complexity phasing method for thousands of genomes
    • Delaneau, O., Marchini, J., Zagury, J.F., A linear complexity phasing method for thousands of genomes. Nat. Methods 9 (2011), 179–181.
    • (2011) Nat. Methods , vol.9 , pp. 179-181
    • Delaneau, O.1    Marchini, J.2    Zagury, J.F.3
  • 11
    • 84864417548 scopus 로고    scopus 로고
    • Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
    • Howie, B., Fuchsberger, C., Stephens, M., Marchini, J., Abecasis, G.R., Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nat. Genet. 44 (2012), 955–959.
    • (2012) Nat. Genet. , vol.44 , pp. 955-959
    • Howie, B.1    Fuchsberger, C.2    Stephens, M.3    Marchini, J.4    Abecasis, G.R.5
  • 13
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie, B.N., Donnelly, P., Marchini, J., A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet., 5, 2009, e1000529.
    • (2009) PLoS Genet. , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 15
    • 0036176161 scopus 로고    scopus 로고
    • K/DOQI clinical practice guidelines for chronic kidney disease: evaluation, classification, and stratification
    • National Kidney Foundation. K/DOQI clinical practice guidelines for chronic kidney disease: evaluation, classification, and stratification. Am. J. Kidney Dis. 39:2 Suppl 1 (2002), S1–S266.
    • (2002) Am. J. Kidney Dis. , vol.39 , Issue.2 , pp. S1-S266
  • 16
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin, B., Roeder, K., Genomic control for association studies. Biometrics 55 (1999), 997–1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 17
    • 77952714079 scopus 로고    scopus 로고
    • GWAMA: software for genome-wide association meta-analysis
    • Mägi, R., Morris, A.P., GWAMA: software for genome-wide association meta-analysis. BMC Bioinformatics, 11, 2010, 288.
    • (2010) BMC Bioinformatics , vol.11 , pp. 288
    • Mägi, R.1    Morris, A.P.2
  • 18
    • 41049087605 scopus 로고    scopus 로고
    • Heterogeneity in meta-analyses of genome-wide association investigations
    • Ioannidis, J.P.A., Patsopoulos, N.A., Evangelou, E., Heterogeneity in meta-analyses of genome-wide association investigations. PLoS ONE, 2, 2007, e841.
    • (2007) PLoS ONE , vol.2 , pp. e841
    • Ioannidis, J.P.A.1    Patsopoulos, N.A.2    Evangelou, E.3
  • 19
    • 84947599300 scopus 로고    scopus 로고
    • LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants
    • Machiela, M.J., Chanock, S.J., LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants. Bioinformatics 31 (2015), 3555–3557.
    • (2015) Bioinformatics , vol.31 , pp. 3555-3557
    • Machiela, M.J.1    Chanock, S.J.2
  • 20
    • 77955894071 scopus 로고    scopus 로고
    • METAL: fast and efficient meta-analysis of genomewide association scans
    • Willer, C.J., Li, Y., Abecasis, G.R., METAL: fast and efficient meta-analysis of genomewide association scans. Bioinformatics 26 (2010), 2190–2191.
    • (2010) Bioinformatics , vol.26 , pp. 2190-2191
    • Willer, C.J.1    Li, Y.2    Abecasis, G.R.3
  • 22
    • 82355170584 scopus 로고    scopus 로고
    • Transethnic meta-analysis of genomewide association studies
    • Morris, A.P., Transethnic meta-analysis of genomewide association studies. Genet. Epidemiol. 35 (2011), 809–822.
    • (2011) Genet. Epidemiol. , vol.35 , pp. 809-822
    • Morris, A.P.1
  • 27
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489 (2012), 57–74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 29
    • 84898723939 scopus 로고    scopus 로고
    • Joint analysis of functional genomic data and genome-wide association studies of 18 human traits
    • Pickrell, J.K., Joint analysis of functional genomic data and genome-wide association studies of 18 human traits. Am. J. Hum. Genet. 94 (2014), 559–573.
    • (2014) Am. J. Hum. Genet. , vol.94 , pp. 559-573
    • Pickrell, J.K.1
  • 30
    • 79955944455 scopus 로고    scopus 로고
    • Regulation of longevity by regulator of G-protein signaling protein, Loco
    • Lin, Y.R., Kim, K., Yang, Y., Ivessa, A., Sadoshima, J., Park, Y., Regulation of longevity by regulator of G-protein signaling protein, Loco. Aging Cell 10 (2011), 438–447.
    • (2011) Aging Cell , vol.10 , pp. 438-447
    • Lin, Y.R.1    Kim, K.2    Yang, Y.3    Ivessa, A.4    Sadoshima, J.5    Park, Y.6
  • 31
    • 84885837321 scopus 로고    scopus 로고
    • Loss of collectrin, an angiotensin-converting enzyme 2 homolog, uncouples endothelial nitric oxide synthase and causes hypertension and vascular dysfunction
    • Cechova, S., Zeng, Q., Billaud, M., Mutchler, S., Rudy, C.K., Straub, A.C., Chi, L., Chan, F.R., Hu, J., Griffiths, R., et al. Loss of collectrin, an angiotensin-converting enzyme 2 homolog, uncouples endothelial nitric oxide synthase and causes hypertension and vascular dysfunction. Circulation 128 (2013), 1770–1780.
    • (2013) Circulation , vol.128 , pp. 1770-1780
    • Cechova, S.1    Zeng, Q.2    Billaud, M.3    Mutchler, S.4    Rudy, C.K.5    Straub, A.C.6    Chi, L.7    Chan, F.R.8    Hu, J.9    Griffiths, R.10
  • 32
    • 73349118815 scopus 로고    scopus 로고
    • Glutathione S-transferase-micro1 regulates vascular smooth muscle cell proliferation, migration, and oxidative stress
    • Yang, Y., Parsons, K.K., Chi, L., Malakauskas, S.M., Le, T.H., Glutathione S-transferase-micro1 regulates vascular smooth muscle cell proliferation, migration, and oxidative stress. Hypertension 54 (2009), 1360–1368.
    • (2009) Hypertension , vol.54 , pp. 1360-1368
    • Yang, Y.1    Parsons, K.K.2    Chi, L.3    Malakauskas, S.M.4    Le, T.H.5
  • 33
    • 84884726709 scopus 로고    scopus 로고
    • Investigation of known estimated glomerular filtration rate loci in patients with type 2 diabetes
    • Deshmukh, H.A., Palmer, C.N., Morris, A.D., Colhoun, H.M., Investigation of known estimated glomerular filtration rate loci in patients with type 2 diabetes. Diabet. Med. 30 (2013), 1230–1235.
    • (2013) Diabet. Med. , vol.30 , pp. 1230-1235
    • Deshmukh, H.A.1    Palmer, C.N.2    Morris, A.D.3    Colhoun, H.M.4
  • 37
    • 80052753687 scopus 로고    scopus 로고
    • Histone deacetylase (HDAC) activity is critical for embryonic kidney gene expression, growth, and differentiation
    • Chen, S., Bellew, C., Yao, X., Stefkova, J., Dipp, S., Saifudeen, Z., Bachvarov, D., El-Dahr, S.S., Histone deacetylase (HDAC) activity is critical for embryonic kidney gene expression, growth, and differentiation. J. Biol. Chem. 286 (2011), 32775–32789.
    • (2011) J. Biol. Chem. , vol.286 , pp. 32775-32789
    • Chen, S.1    Bellew, C.2    Yao, X.3    Stefkova, J.4    Dipp, S.5    Saifudeen, Z.6    Bachvarov, D.7    El-Dahr, S.S.8
  • 39
    • 33947218932 scopus 로고    scopus 로고
    • The Drosophila NFAT homolog is involved in salt stress tolerance
    • Keyser, P., Borge-Renberg, K., Hultmark, D., The Drosophila NFAT homolog is involved in salt stress tolerance. Insect Biochem. Mol. Biol. 37 (2007), 356–362.
    • (2007) Insect Biochem. Mol. Biol. , vol.37 , pp. 356-362
    • Keyser, P.1    Borge-Renberg, K.2    Hultmark, D.3
  • 40
  • 43
    • 84873086126 scopus 로고    scopus 로고
    • Chromatin marks identify critical cell types for fine mapping complex trait variants
    • Trynka, G., Sandor, C., Han, B., Xu, H., Stranger, B.E., Liu, X.S., Raychaudhuri, S., Chromatin marks identify critical cell types for fine mapping complex trait variants. Nat. Genet. 45 (2013), 124–130.
    • (2013) Nat. Genet. , vol.45 , pp. 124-130
    • Trynka, G.1    Sandor, C.2    Han, B.3    Xu, H.4    Stranger, B.E.5    Liu, X.S.6    Raychaudhuri, S.7
  • 44
    • 84887072795 scopus 로고    scopus 로고
    • Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
    • Parker, S.C., Stitzel, M.L., Taylor, D.L., Orozco, J.M., Erdos, M.R., Akiyama, J.A., van Bueren, K.L., Chines, P.S., Narisu, N., Black, B.L., et al. NISC Comparative Sequencing Program National Institutes of Health Intramural Sequencing Center Comparative Sequencing Program Authors, NISC Comparative Sequencing Program Authors. Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants. Proc. Natl. Acad. Sci. USA 110 (2013), 17921–17926.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 17921-17926
    • Parker, S.C.1    Stitzel, M.L.2    Taylor, D.L.3    Orozco, J.M.4    Erdos, M.R.5    Akiyama, J.A.6    van Bueren, K.L.7    Chines, P.S.8    Narisu, N.9    Black, B.L.10
  • 45
    • 84922273141 scopus 로고    scopus 로고
    • Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases
    • Gusev, A., Lee, S.H., Trynka, G., Finucane, H., Vilhjálmsson, B.J., Xu, H., Zang, C., Ripke, S., Bulik-Sullivan, B., Stahl, E., et al. Schizophrenia Working Group of the Psychiatric Genomics Consortium SWE-SCZ Consortium Schizophrenia Working Group of the Psychiatric Genomics Consortium, SWE-SCZ Consortium. Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases. Am. J. Hum. Genet. 95 (2014), 535–552.
    • (2014) Am. J. Hum. Genet. , vol.95 , pp. 535-552
    • Gusev, A.1    Lee, S.H.2    Trynka, G.3    Finucane, H.4    Vilhjálmsson, B.J.5    Xu, H.6    Zang, C.7    Ripke, S.8    Bulik-Sullivan, B.9    Stahl, E.10
  • 46
    • 84938982145 scopus 로고    scopus 로고
    • Leveraging functional-annotation data in trans-ethnic fine-mapping studies
    • Kichaev, G., Pasaniuc, B., Leveraging functional-annotation data in trans-ethnic fine-mapping studies. Am. J. Hum. Genet. 97 (2015), 260–271.
    • (2015) Am. J. Hum. Genet. , vol.97 , pp. 260-271
    • Kichaev, G.1    Pasaniuc, B.2
  • 47
    • 0028121763 scopus 로고
    • Microalbuminuria in salt-sensitive patients. A marker for renal and cardiovascular risk factors
    • Bigazzi, R., Bianchi, S., Baldari, D., Sgherri, G., Baldari, G., Campese, V.M., Microalbuminuria in salt-sensitive patients. A marker for renal and cardiovascular risk factors. Hypertension 23 (1994), 195–199.
    • (1994) Hypertension , vol.23 , pp. 195-199
    • Bigazzi, R.1    Bianchi, S.2    Baldari, D.3    Sgherri, G.4    Baldari, G.5    Campese, V.M.6
  • 48
    • 0033897722 scopus 로고    scopus 로고
    • Association between salt sensitivity and target organ damage in essential hypertension
    • Bihorac, A., Tezcan, H., Ozener, C., Oktay, A., Akoglu, E., Association between salt sensitivity and target organ damage in essential hypertension. Am. J. Hypertens. 13 (2000), 864–872.
    • (2000) Am. J. Hypertens. , vol.13 , pp. 864-872
    • Bihorac, A.1    Tezcan, H.2    Ozener, C.3    Oktay, A.4    Akoglu, E.5
  • 50
    • 0000531165 scopus 로고
    • The sodium concentration in the macula densa cells as a regulating factor for glomerular filtration (micropuncture experiments)
    • Thurau, K., Schnermann, J., The sodium concentration in the macula densa cells as a regulating factor for glomerular filtration (micropuncture experiments). Klin. Wochenschr. 43 (1965), 410–413.
    • (1965) Klin. Wochenschr. , vol.43 , pp. 410-413
    • Thurau, K.1    Schnermann, J.2
  • 51
    • 0001901340 scopus 로고    scopus 로고
    • TGF and nitric oxide: effects of salt intake and salt-sensitive hypertension
    • Wilcox, C.S., Welch, W.J., TGF and nitric oxide: effects of salt intake and salt-sensitive hypertension. Kidney Int. Suppl. 55 (1996), S9–S13.
    • (1996) Kidney Int. Suppl. , vol.55 , pp. S9-S13
    • Wilcox, C.S.1    Welch, W.J.2
  • 52
    • 84884557758 scopus 로고    scopus 로고
    • Interactions between adenosine, angiotensin II and nitric oxide on the afferent arteriole influence sensitivity of the tubuloglomerular feedback
    • Persson, A.E.G., Lai, E.Y., Gao, X., Carlström, M., Patzak, A., Interactions between adenosine, angiotensin II and nitric oxide on the afferent arteriole influence sensitivity of the tubuloglomerular feedback. Front. Physiol., 4, 2013, 187.
    • (2013) Front. Physiol. , vol.4 , pp. 187
    • Persson, A.E.G.1    Lai, E.Y.2    Gao, X.3    Carlström, M.4    Patzak, A.5
  • 54
    • 79851513755 scopus 로고    scopus 로고
    • Mechanisms and consequences of salt sensitivity and dietary salt intake
    • Kanbay, M., Chen, Y., Solak, Y., Sanders, P.W., Mechanisms and consequences of salt sensitivity and dietary salt intake. Curr. Opin. Nephrol. Hypertens. 20 (2011), 37–43.
    • (2011) Curr. Opin. Nephrol. Hypertens. , vol.20 , pp. 37-43
    • Kanbay, M.1    Chen, Y.2    Solak, Y.3    Sanders, P.W.4
  • 55
    • 84959469818 scopus 로고    scopus 로고
    • Vasodysfunction that involves renal vasodysfunction, not abnormally increased renal retention of sodium, accounts for the initiation of salt-induced hypertension
    • Morris, R.C. Jr., Schmidlin, O., Sebastian, A., Tanaka, M., Kurtz, T.W., Vasodysfunction that involves renal vasodysfunction, not abnormally increased renal retention of sodium, accounts for the initiation of salt-induced hypertension. Circulation 133 (2016), 881–893.
    • (2016) Circulation , vol.133 , pp. 881-893
    • Morris, R.C.1    Schmidlin, O.2    Sebastian, A.3    Tanaka, M.4    Kurtz, T.W.5


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