메뉴 건너뛰기




Volumn 32, Issue 10, 2016, Pages 1493-1501

FINEMAP: Efficient variable selection using summary data from genome-wide association studies

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; GENOME; GENOME-WIDE ASSOCIATION STUDY; GENOMICS; SINGLE NUCLEOTIDE POLYMORPHISM; SOFTWARE;

EID: 84970015769     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btw018     Document Type: Article
Times cited : (456)

References (29)
  • 1
    • 0037262814 scopus 로고    scopus 로고
    • An introduction to MCMC for machine learning
    • Andrieu,C. et al. (2003) An introduction to MCMC for machine learning. Mach. Learn., 50, 5-43.
    • (2003) Mach. Learn. , vol.50 , pp. 5-43
    • Andrieu, C.1
  • 2
    • 79951540621 scopus 로고    scopus 로고
    • Evolutionary stochastic search for Bayesian model exploration
    • Bottolo,L. and Richardson,S. (2010) Evolutionary stochastic search for Bayesian model exploration. Bayesian Anal., 3, 583-618.
    • (2010) Bayesian Anal. , vol.3 , pp. 583-618
    • Bottolo, L.1    Richardson, S.2
  • 3
    • 84884626511 scopus 로고    scopus 로고
    • GUESS-ing polygenic associations with multiple phenotypes using a GPU-based evolutionary stochastic search algorithm
    • Bottolo,L. et al. (2013) GUESS-ing polygenic associations with multiple phenotypes using a GPU-based evolutionary stochastic search algorithm. PLoS Genet., 9, e1003657.
    • (2013) PLoS Genet. , vol.9 , pp. e1003657
    • Bottolo, L.1
  • 4
    • 84939512410 scopus 로고    scopus 로고
    • Forty-year trends in cardiovascular risk factors in Finland
    • Borodulin,K. et al. (2015) Forty-year trends in cardiovascular risk factors in Finland. Eur. J. Public Health, 25, 539-546.
    • (2015) Eur. J. Public Health , vol.25 , pp. 539-546
    • Borodulin, K.1
  • 5
    • 84860819981 scopus 로고    scopus 로고
    • Scalable variational inference for Bayesian variable selection in regression, and its accuracy in genetic association studies
    • Carbonetto,P. and Stephens,M. (2012) Scalable variational inference for Bayesian variable selection in regression, and its accuracy in genetic association studies. Bayesian Anal., 1, 73-108.
    • (2012) Bayesian Anal. , vol.1 , pp. 73-108
    • Carbonetto, P.1    Stephens, M.2
  • 6
    • 84937035185 scopus 로고    scopus 로고
    • Fine mapping causal variants with an approximate Bayesian method using marginal test statistics
    • Chen,W. et al. (2015) Fine mapping causal variants with an approximate Bayesian method using marginal test statistics. Genetics, 200, 719-736.
    • (2015) Genetics , vol.200 , pp. 719-736
    • Chen, W.1
  • 7
    • 0033978594 scopus 로고    scopus 로고
    • The C-514T polymorphism in the human hepatic lipase gene promoter diminishes its activity
    • Deeb,S. and Peng,R. (2000) The C-514T polymorphism in the human hepatic lipase gene promoter diminishes its activity. J. Lipid Res., 41, 155-158.
    • (2000) J. Lipid Res. , vol.41 , pp. 155-158
    • Deeb, S.1    Peng, R.2
  • 8
    • 0028177427 scopus 로고
    • Molecular characterization of human hepatic lipase deficiency. in vitro expression of two naturally occurring mutations
    • Durstenfeld,A. et al. (1994) Molecular characterization of human hepatic lipase deficiency. in vitro expression of two naturally occurring mutations. Arterioscler. Thromb., 14, 381-385.
    • (1994) Arterioscler. Thromb. , vol.14 , pp. 381-385
    • Durstenfeld, A.1
  • 9
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images
    • Geman,S. and Geman,D. (1984) Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell., 6, 721-741.
    • (1984) IEEE Trans. Pattern Anal. Mach. Intell. , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 11
    • 82955223524 scopus 로고    scopus 로고
    • Bayesian variable selection regression for genome-wide association studies and other large-scale problems
    • Guan,Y. and Stephens,M. (2011) Bayesian variable selection regression for genome-wide association studies and other large-scale problems. Ann. Appl. Stat., 5, 1780-1815.
    • (2011) Ann. Appl. Stat. , vol.5 , pp. 1780-1815
    • Guan, Y.1    Stephens, M.2
  • 12
    • 34250747348 scopus 로고    scopus 로고
    • Shotgun stochastic search for "large p" regression
    • Hans,D. et al. (2007) Shotgun stochastic search for "large p" regression. J. Am. Stat. Assoc., 102, 507-516.
    • (2007) J. Am. Stat. Assoc. , vol.102 , pp. 507-516
    • Hans, D.1
  • 13
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings,W. (1970) Monte Carlo sampling methods using Markov chains and their applications. Biometrika, 57, 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.1
  • 14
    • 84898058547 scopus 로고    scopus 로고
    • Systematic evaluation of coding variation identifies a candidate causal variant in TM6SF2 influencing total cholesterol and myocardial infarction risk
    • Holmen,O.L. et al. (2014) Systematic evaluation of coding variation identifies a candidate causal variant in TM6SF2 influencing total cholesterol and myocardial infarction risk. Nat. Genet., 46, 345-351.
    • (2014) Nat. Genet. , vol.46 , pp. 345-351
    • Holmen, O.L.1
  • 15
    • 84908042860 scopus 로고    scopus 로고
    • Identifying causal variants at loci with multiple signals of association
    • Hormozdiari,F. et al. (2014) Identifying causal variants at loci with multiple signals of association. Genetics, 198, 497-508.
    • (2014) Genetics , vol.198 , pp. 497-508
    • Hormozdiari, F.1
  • 16
    • 84908324508 scopus 로고    scopus 로고
    • Integrating functional data to prioritize causal variants in statistical fine mapping studies
    • Kichaev,G. et al. (2014) Integrating functional data to prioritize causal variants in statistical fine mapping studies. PLoS Genet., 10, e1004722.
    • (2014) PLoS Genet. , vol.10 , pp. e1004722
    • Kichaev, G.1
  • 17
    • 84938982145 scopus 로고    scopus 로고
    • Leveraging functional-annotation data in trans-ethnic fine-mapping studies
    • Kichaev,G. and Pasaniuc,B. (2015) Leveraging functional-annotation data in trans-ethnic fine-mapping studies. Am. J. Hum. Genet., 97, 260-271.
    • (2015) Am. J. Hum. Genet. , vol.97 , pp. 260-271
    • Kichaev, G.1    Pasaniuc, B.2
  • 18
    • 84890014591 scopus 로고    scopus 로고
    • DIST: Direct imputation of summary statistics for unmeasured SNPs
    • Lee,D. et al. (2013) DIST: direct imputation of summary statistics for unmeasured SNPs. Bioinformatics, 29, 2925-2927.
    • (2013) Bioinformatics , vol.29 , pp. 2925-2927
    • Lee, D.1
  • 19
    • 5744249209 scopus 로고
    • Equations of state calculations by fast computing machines
    • Metropolis,N. et al. (1953) Equations of state calculations by fast computing machines. J. Chem. Phys., 21, 1087-1092.
    • (1953) J. Chem. Phys. , vol.21 , pp. 1087-1092
    • Metropolis, N.1
  • 20
    • 84921782559 scopus 로고    scopus 로고
    • Fast and accurate imputation of summary statistics enhances evidence of functional enrichment
    • Pasaniuc,B. et al. (2014) Fast and accurate imputation of summary statistics enhances evidence of functional enrichment. Bioinformatics, 30, 2906-2914.
    • (2014) Bioinformatics , vol.30 , pp. 2906-2914
    • Pasaniuc, B.1
  • 21
    • 84876017803 scopus 로고    scopus 로고
    • Efficient computation with a linear mixed model on large-scale data sets with applications to genetic studies
    • Pirinen,M. et al. (2013) Efficient computation with a linear mixed model on large-scale data sets with applications to genetic studies. Ann. Appl. Stat., 7, 369-390.
    • (2013) Ann. Appl. Stat. , vol.7 , pp. 369-390
    • Pirinen, M.1
  • 22
    • 34547622688 scopus 로고    scopus 로고
    • Imputation-based analysis of association studies: Candidate regions and quantitative traits
    • Servin,B. and Stephens,M. (2007) Imputation-based analysis of association studies: candidate regions and quantitative traits. PLoS Genet., 3, e114.
    • (2007) PLoS Genet. , vol.3 , pp. e114
    • Servin, B.1    Stephens, M.2
  • 23
    • 84943805735 scopus 로고    scopus 로고
    • Strategies for fine mapping complex traits
    • Spain,S. and Barrett,J. (2015) Strategies for fine mapping complex traits. Hum. Mol. Genet., 42, 1001-1006.
    • (2015) Hum. Mol. Genet. , vol.42 , pp. 1001-1006
    • Spain, S.1    Barrett, J.2
  • 24
    • 84930090376 scopus 로고    scopus 로고
    • The impact of low-frequency and rare variants on lipid levels
    • Surakka,I. et al. (2015) The impact of low-frequency and rare variants on lipid levels. Nat. Genet., 47, 589-597.
    • (2015) Nat. Genet. , vol.47 , pp. 589-597
    • Surakka, I.1
  • 25
    • 78650550275 scopus 로고    scopus 로고
    • Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21
    • The UK Parkinson's Disease Consortium and The Wellcome Trust Case Control Consortium 2. (2011) Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21. Hum. Mol. Genet., 20, 345-353.
    • (2011) Hum. Mol. Genet. , vol.20 , pp. 345-353
    • The UK Parkinson's Disease Consortium and The Wellcome Trust Case Control Consortium 21
  • 26
    • 84937791662 scopus 로고    scopus 로고
    • Dissection of a complex disease susceptibility region using a Bayesian stochastic search approach to fine mapping
    • Wallace,C. et al. (2015) Dissection of a complex disease susceptibility region using a Bayesian stochastic search approach to fine mapping. PLoS Genet., 11, e1005272.
    • (2015) PLoS Genet. , vol.11 , pp. e1005272
    • Wallace, C.1
  • 27
    • 84870502629 scopus 로고    scopus 로고
    • Bayesian refinement of association signals for 14 loci in 3 common diseases
    • Wellcome Trust Case Control Consortium. et al. (2012) Bayesian refinement of association signals for 14 loci in 3 common diseases. Nat. Genet., 44, 1294-1301.
    • (2012) Nat. Genet. , vol.44 , pp. 1294-1301
    • Wellcome Trust Case Control Consortium. et al1
  • 28
    • 84908890496 scopus 로고    scopus 로고
    • Defining the role of common variation in the genomic and biological architecture of adult human height
    • Wood,A. et al. (2014) Defining the role of common variation in the genomic and biological architecture of adult human height. Nat. Genet., 46, 1173-1186.
    • (2014) Nat. Genet. , vol.46 , pp. 1173-1186
    • Wood, A.1
  • 29
    • 78650856517 scopus 로고    scopus 로고
    • GCTA: A tool for genome-wide complex trait analysis
    • Yang,J. et al. (2011) GCTA: A tool for genome-wide complex trait analysis. Am. J. Hum. Genet., 88, 76-82.
    • (2011) Am. J. Hum. Genet. , vol.88 , pp. 76-82
    • Yang, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.