-
1
-
-
84923258878
-
Neural progenitor cells orchestrate microglia migration and positioning into the developing cortex
-
Arnò, B., Grassivaro, F., Rossi, C., Bergamaschi, A., Castiglioni, V., Furlan, R., Greter, M., Favaro, R., Comi, G., Becher, B., et al. Neural progenitor cells orchestrate microglia migration and positioning into the developing cortex. Nat. Commun., 5, 2014, 5611.
-
(2014)
Nat. Commun.
, vol.5
, pp. 5611
-
-
Arnò, B.1
Grassivaro, F.2
Rossi, C.3
Bergamaschi, A.4
Castiglioni, V.5
Furlan, R.6
Greter, M.7
Favaro, R.8
Comi, G.9
Becher, B.10
-
2
-
-
79251648880
-
Orientation and expression of methicillin-resistant Staphylococcus aureus small RNAs by direct multiplexed measurements using the nCounter of NanoString technology
-
Beaume, M., Hernandez, D., Docquier, M., Delucinge-Vivier, C., Descombes, P., François, P., Orientation and expression of methicillin-resistant Staphylococcus aureus small RNAs by direct multiplexed measurements using the nCounter of NanoString technology. J. Microbiol. Methods 84 (2011), 327–334.
-
(2011)
J. Microbiol. Methods
, vol.84
, pp. 327-334
-
-
Beaume, M.1
Hernandez, D.2
Docquier, M.3
Delucinge-Vivier, C.4
Descombes, P.5
François, P.6
-
3
-
-
80053304450
-
High density DNA methylation array with single CpG site resolution
-
Bibikova, M., Barnes, B., Tsan, C., Ho, V., Klotzle, B., Le, J.M., Delano, D., Zhang, L., Schroth, G.P., Gunderson, K.L., et al. High density DNA methylation array with single CpG site resolution. Genomics 98 (2011), 288–295.
-
(2011)
Genomics
, vol.98
, pp. 288-295
-
-
Bibikova, M.1
Barnes, B.2
Tsan, C.3
Ho, V.4
Klotzle, B.5
Le, J.M.6
Delano, D.7
Zhang, L.8
Schroth, G.P.9
Gunderson, K.L.10
-
4
-
-
84911884131
-
The gut microbiota influences blood-brain barrier permeability in mice
-
Braniste, V., Al-Asmakh, M., Kowal, C., Anuar, F., Abbaspour, A., Tóth, M., Korecka, A., Bakocevic, N., Ng, L.G., Kundu, P., et al. The gut microbiota influences blood-brain barrier permeability in mice. Sci. Transl. Med., 6, 2014, 263ra158.
-
(2014)
Sci. Transl. Med.
, vol.6
, pp. 263ra158
-
-
Braniste, V.1
Al-Asmakh, M.2
Kowal, C.3
Anuar, F.4
Abbaspour, A.5
Tóth, M.6
Korecka, A.7
Bakocevic, N.8
Ng, L.G.9
Kundu, P.10
-
5
-
-
84888877924
-
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
-
Buenrostro, J.D., Giresi, P.G., Zaba, L.C., Chang, H.Y., Greenleaf, W.J., Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat. Methods 10 (2013), 1213–1218.
-
(2013)
Nat. Methods
, vol.10
, pp. 1213-1218
-
-
Buenrostro, J.D.1
Giresi, P.G.2
Zaba, L.C.3
Chang, H.Y.4
Greenleaf, W.J.5
-
6
-
-
84992386887
-
Sall1 is a transcriptional regulator defining microglia identity and function
-
Buttgereit, A., Lelios, I., Yu, X., Vrohlings, M., Krakoski, N.R., Gautier, E.L., Nishinakamura, R., Becher, B., Greter, M., Sall1 is a transcriptional regulator defining microglia identity and function. Nat. Immunol. 17 (2016), 1397–1406.
-
(2016)
Nat. Immunol.
, vol.17
, pp. 1397-1406
-
-
Buttgereit, A.1
Lelios, I.2
Yu, X.3
Vrohlings, M.4
Krakoski, N.R.5
Gautier, E.L.6
Nishinakamura, R.7
Becher, B.8
Greter, M.9
-
7
-
-
84923238571
-
Microglia: multitasking specialists of the brain
-
Casano, A.M., Peri, F., Microglia: multitasking specialists of the brain. Dev. Cell 32 (2015), 469–477.
-
(2015)
Dev. Cell
, vol.32
, pp. 469-477
-
-
Casano, A.M.1
Peri, F.2
-
8
-
-
85018340947
-
Microglia function in the central nervous system during health and neurodegeneration
-
Colonna, M., Butovsky, O., Microglia function in the central nervous system during health and neurodegeneration. Annu. Rev. Immunol. 35 (2017), 441–468.
-
(2017)
Annu. Rev. Immunol.
, vol.35
, pp. 441-468
-
-
Colonna, M.1
Butovsky, O.2
-
9
-
-
84906307352
-
Microglia as a critical player in both developmental and late-life CNS pathologies
-
Derecki, N.C., Katzmarski, N., Kipnis, J., Meyer-Luehmann, M., Microglia as a critical player in both developmental and late-life CNS pathologies. Acta Neuropathol. 128 (2014), 333–345.
-
(2014)
Acta Neuropathol.
, vol.128
, pp. 333-345
-
-
Derecki, N.C.1
Katzmarski, N.2
Kipnis, J.3
Meyer-Luehmann, M.4
-
10
-
-
79952601424
-
Normal gut microbiota modulates brain development and behavior
-
Diaz Heijtz, R., Wang, S., Anuar, F., Qian, Y., Björkholm, B., Samuelsson, A., Hibberd, M.L., Forssberg, H., Pettersson, S., Normal gut microbiota modulates brain development and behavior. Proc. Natl. Acad. Sci. USA 108 (2011), 3047–3052.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3047-3052
-
-
Diaz Heijtz, R.1
Wang, S.2
Anuar, F.3
Qian, Y.4
Björkholm, B.5
Samuelsson, A.6
Hibberd, M.L.7
Forssberg, H.8
Pettersson, S.9
-
11
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
Dobin, A., Davis, C.A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., Gingeras, T.R., STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29 (2013), 15–21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
12
-
-
46249088370
-
lumi: a pipeline for processing Illumina microarray
-
Du, P., Kibbe, W.A., Lin, S.M., lumi: a pipeline for processing Illumina microarray. Bioinformatics 24 (2008), 1547–1548.
-
(2008)
Bioinformatics
, vol.24
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
13
-
-
84933043202
-
Host microbiota constantly control maturation and function of microglia in the CNS
-
Erny, D., Hrabě de Angelis, A.L., Jaitin, D., Wieghofer, P., Staszewski, O., David, E., Keren-Shaul, H., Mahlakoiv, T., Jakobshagen, K., Buch, T., et al. Host microbiota constantly control maturation and function of microglia in the CNS. Nat. Neurosci. 18 (2015), 965–977.
-
(2015)
Nat. Neurosci.
, vol.18
, pp. 965-977
-
-
Erny, D.1
Hrabě de Angelis, A.L.2
Jaitin, D.3
Wieghofer, P.4
Staszewski, O.5
David, E.6
Keren-Shaul, H.7
Mahlakoiv, T.8
Jakobshagen, K.9
Buch, T.10
-
14
-
-
84940055979
-
Origin of microglia: current concepts and past controversies
-
Ginhoux, F., Prinz, M., Origin of microglia: current concepts and past controversies. Cold Spring Harb. Perspect. Biol., 7, 2015, a020537.
-
(2015)
Cold Spring Harb. Perspect. Biol.
, vol.7
, pp. a020537
-
-
Ginhoux, F.1
Prinz, M.2
-
15
-
-
78149360132
-
Fate mapping analysis reveals that adult microglia derive from primitive macrophages
-
Ginhoux, F., Greter, M., Leboeuf, M., Nandi, S., See, P., Gokhan, S., Mehler, M.F., Conway, S.J., Ng, L.G., Stanley, E.R., et al. Fate mapping analysis reveals that adult microglia derive from primitive macrophages. Science 330 (2010), 841–845.
-
(2010)
Science
, vol.330
, pp. 841-845
-
-
Ginhoux, F.1
Greter, M.2
Leboeuf, M.3
Nandi, S.4
See, P.5
Gokhan, S.6
Mehler, M.F.7
Conway, S.J.8
Ng, L.G.9
Stanley, E.R.10
-
16
-
-
84920724792
-
Environment drives selection and function of enhancers controlling tissue-specific macrophage identities
-
Gosselin, D., Link, V.M., Romanoski, C.E., Fonseca, G.J., Eichenfield, D.Z., Spann, N.J., Stender, J.D., Chun, H.B., Garner, H., Geissmann, F., Glass, C.K., Environment drives selection and function of enhancers controlling tissue-specific macrophage identities. Cell 159 (2014), 1327–1340.
-
(2014)
Cell
, vol.159
, pp. 1327-1340
-
-
Gosselin, D.1
Link, V.M.2
Romanoski, C.E.3
Fonseca, G.J.4
Eichenfield, D.Z.5
Spann, N.J.6
Stender, J.D.7
Chun, H.B.8
Garner, H.9
Geissmann, F.10
Glass, C.K.11
-
17
-
-
85020163581
-
An environment-dependent transcriptional network specifies human microglia identity
-
Gosselin, D., Skola, D., Coufal, N.G., Holtman, I.R., Schlachetzki, J.C.M., Sajti, E., Jaeger, B.N., O'Connor, C., Fitzpatrick, C., Pasillas, M.P., et al. An environment-dependent transcriptional network specifies human microglia identity. Science, 356, 2017, eaal3222.
-
(2017)
Science
, vol.356
, pp. eaal3222
-
-
Gosselin, D.1
Skola, D.2
Coufal, N.G.3
Holtman, I.R.4
Schlachetzki, J.C.M.5
Sajti, E.6
Jaeger, B.N.7
O'Connor, C.8
Fitzpatrick, C.9
Pasillas, M.P.10
-
18
-
-
84959110290
-
Microglial brain region-dependent diversity and selective regional sensitivities to aging
-
Grabert, K., Michoel, T., Karavolos, M.H., Clohisey, S., Baillie, J.K., Stevens, M.P., Freeman, T.C., Summers, K.M., McColl, B.W., Microglial brain region-dependent diversity and selective regional sensitivities to aging. Nat. Neurosci. 19 (2016), 504–516.
-
(2016)
Nat. Neurosci.
, vol.19
, pp. 504-516
-
-
Grabert, K.1
Michoel, T.2
Karavolos, M.H.3
Clohisey, S.4
Baillie, J.K.5
Stevens, M.P.6
Freeman, T.C.7
Summers, K.M.8
McColl, B.W.9
-
19
-
-
84961637981
-
Visualizing genomic data using Gviz and Bioconductor
-
Hahne, F., Ivanek, R., Visualizing genomic data using Gviz and Bioconductor. Methods Mol. Biol. 1418 (2016), 335–351.
-
(2016)
Methods Mol. Biol.
, vol.1418
, pp. 335-351
-
-
Hahne, F.1
Ivanek, R.2
-
20
-
-
84931271569
-
Sex and gender differences in autism spectrum disorder: summarizing evidence gaps and identifying emerging areas of priority
-
Halladay, A.K., Bishop, S., Constantino, J.N., Daniels, A.M., Koenig, K., Palmer, K., Messinger, D., Pelphrey, K., Sanders, S.J., Singer, A.T., et al. Sex and gender differences in autism spectrum disorder: summarizing evidence gaps and identifying emerging areas of priority. Mol. Autism, 6, 2015, 36.
-
(2015)
Mol. Autism
, vol.6
, pp. 36
-
-
Halladay, A.K.1
Bishop, S.2
Constantino, J.N.3
Daniels, A.M.4
Koenig, K.5
Palmer, K.6
Messinger, D.7
Pelphrey, K.8
Sanders, S.J.9
Singer, A.T.10
-
21
-
-
85020135902
-
Generation of a microglial developmental index in mice and in humans reveals a sex difference in maturation and immune reactivity
-
Hanamsagar, R., Alter, M.D., Block, C.S., Sullivan, H., Bolton, J.L., Bilbo, S.D., Generation of a microglial developmental index in mice and in humans reveals a sex difference in maturation and immune reactivity. Glia 65 (2017), 1504–1520.
-
(2017)
Glia
, vol.65
, pp. 1504-1520
-
-
Hanamsagar, R.1
Alter, M.D.2
Block, C.S.3
Sullivan, H.4
Bolton, J.L.5
Bilbo, S.D.6
-
22
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y.C., Laslo, P., Cheng, J.X., Murre, C., Singh, H., Glass, C.K., Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38 (2010), 576–589.
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
23
-
-
84888324248
-
The microglial sensome revealed by direct RNA sequencing
-
Hickman, S.E., Kingery, N.D., Ohsumi, T.K., Borowsky, M.L., Wang, L.C., Means, T.K., El Khoury, J., The microglial sensome revealed by direct RNA sequencing. Nat. Neurosci. 16 (2013), 1896–1905.
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 1896-1905
-
-
Hickman, S.E.1
Kingery, N.D.2
Ohsumi, T.K.3
Borowsky, M.L.4
Wang, L.C.5
Means, T.K.6
El Khoury, J.7
-
24
-
-
84978431877
-
The microbiota in adaptive immune homeostasis and disease
-
Honda, K., Littman, D.R., The microbiota in adaptive immune homeostasis and disease. Nature 535 (2016), 75–84.
-
(2016)
Nature
, vol.535
, pp. 75-84
-
-
Honda, K.1
Littman, D.R.2
-
25
-
-
84952700826
-
New insights on the role of microglia in synaptic pruning in health and disease
-
Hong, S., Dissing-Olesen, L., Stevens, B., New insights on the role of microglia in synaptic pruning in health and disease. Curr. Opin. Neurobiol. 36 (2016), 128–134.
-
(2016)
Curr. Opin. Neurobiol.
, vol.36
, pp. 128-134
-
-
Hong, S.1
Dissing-Olesen, L.2
Stevens, B.3
-
26
-
-
84894118144
-
Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders
-
Hsiao, E.Y., McBride, S.W., Hsien, S., Sharon, G., Hyde, E.R., McCue, T., Codelli, J.A., Chow, J., Reisman, S.E., Petrosino, J.F., et al. Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders. Cell 155 (2013), 1451–1463.
-
(2013)
Cell
, vol.155
, pp. 1451-1463
-
-
Hsiao, E.Y.1
McBride, S.W.2
Hsien, S.3
Sharon, G.4
Hyde, E.R.5
McCue, T.6
Codelli, J.A.7
Chow, J.8
Reisman, S.E.9
Petrosino, J.F.10
-
27
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, W., Sherman, B.T., Lempicki, R.A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4 (2009), 44–57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
28
-
-
84875892857
-
Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways
-
Kierdorf, K., Erny, D., Goldmann, T., Sander, V., Schulz, C., Perdiguero, E.G., Wieghofer, P., Heinrich, A., Riemke, P., Hölscher, C., et al. Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways. Nat. Neurosci. 16 (2013), 273–280.
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 273-280
-
-
Kierdorf, K.1
Erny, D.2
Goldmann, T.3
Sander, V.4
Schulz, C.5
Perdiguero, E.G.6
Wieghofer, P.7
Heinrich, A.8
Riemke, P.9
Hölscher, C.10
-
29
-
-
84983036037
-
Sex differences in immune responses
-
Klein, S.L., Flanagan, K.L., Sex differences in immune responses. Nat. Rev. Immunol. 16 (2016), 626–638.
-
(2016)
Nat. Rev. Immunol.
, vol.16
, pp. 626-638
-
-
Klein, S.L.1
Flanagan, K.L.2
-
30
-
-
84894571860
-
Causal analysis approaches in Ingenuity Pathway Analysis
-
Krämer, A., Green, J., Pollard, J. Jr., Tugendreich, S., Causal analysis approaches in Ingenuity Pathway Analysis. Bioinformatics 30 (2014), 523–530.
-
(2014)
Bioinformatics
, vol.30
, pp. 523-530
-
-
Krämer, A.1
Green, J.2
Pollard, J.3
Tugendreich, S.4
-
31
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis
-
Langfelder, P., Horvath, S., WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics, 9, 2008, 559.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
32
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., Salzberg, S.L., Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, 2009, R25.
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
33
-
-
84907419194
-
Immunogenetics. Chromatin state dynamics during blood formation
-
Lara-Astiaso, D., Weiner, A., Lorenzo-Vivas, E., Zaretsky, I., Jaitin, D.A., David, E., Keren-Shaul, H., Mildner, A., Winter, D., Jung, S., et al. Immunogenetics. Chromatin state dynamics during blood formation. Science 345 (2014), 943–949.
-
(2014)
Science
, vol.345
, pp. 943-949
-
-
Lara-Astiaso, D.1
Weiner, A.2
Lorenzo-Vivas, E.3
Zaretsky, I.4
Jaitin, D.A.5
David, E.6
Keren-Shaul, H.7
Mildner, A.8
Winter, D.9
Jung, S.10
-
34
-
-
84920724791
-
Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment
-
Lavin, Y., Winter, D., Blecher-Gonen, R., David, E., Keren-Shaul, H., Merad, M., Jung, S., Amit, I., Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment. Cell 159 (2014), 1312–1326.
-
(2014)
Cell
, vol.159
, pp. 1312-1326
-
-
Lavin, Y.1
Winter, D.2
Blecher-Gonen, R.3
David, E.4
Keren-Shaul, H.5
Merad, M.6
Jung, S.7
Amit, I.8
-
35
-
-
84883368195
-
Software for computing and annotating genomic ranges
-
Lawrence, M., Huber, W., Pagès, H., Aboyoun, P., Carlson, M., Gentleman, R., Morgan, M.T., Carey, V.J., Software for computing and annotating genomic ranges. PLoS Comput. Biol., 9, 2013, e1003118.
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1003118
-
-
Lawrence, M.1
Huber, W.2
Pagès, H.3
Aboyoun, P.4
Carlson, M.5
Gentleman, R.6
Morgan, M.T.7
Carey, V.J.8
-
36
-
-
84930342622
-
A starring role for microglia in brain sex differences
-
Lenz, K.M., McCarthy, M.M., A starring role for microglia in brain sex differences. Neuroscientist 21 (2015), 306–321.
-
(2015)
Neuroscientist
, vol.21
, pp. 306-321
-
-
Lenz, K.M.1
McCarthy, M.M.2
-
37
-
-
84897397058
-
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
-
Liao, Y., Smyth, G.K., Shi, W., featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30 (2014), 923–930.
-
(2014)
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
-
38
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M.I., Huber, W., Anders, S., Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol., 15, 2014, 550.
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
39
-
-
50849107371
-
Host inactivation of bacterial lipopolysaccharide prevents prolonged tolerance following gram-negative bacterial infection
-
Lu, M., Varley, A.W., Ohta, S., Hardwick, J., Munford, R.S., Host inactivation of bacterial lipopolysaccharide prevents prolonged tolerance following gram-negative bacterial infection. Cell Host Microbe 4 (2008), 293–302.
-
(2008)
Cell Host Microbe
, vol.4
, pp. 293-302
-
-
Lu, M.1
Varley, A.W.2
Ohta, S.3
Hardwick, J.4
Munford, R.S.5
-
40
-
-
84961371041
-
Sex differences in pain: a tale of two immune cells
-
Mapplebeck, J.C., Beggs, S., Salter, M.W., Sex differences in pain: a tale of two immune cells. Pain 157:Suppl 1 (2016), S2–S6.
-
(2016)
Pain
, vol.157
, pp. S2-S6
-
-
Mapplebeck, J.C.1
Beggs, S.2
Salter, M.W.3
-
41
-
-
84879843172
-
Cellular and molecular mechanisms controlling the migration of neocortical interneurons
-
Marín, O., Cellular and molecular mechanisms controlling the migration of neocortical interneurons. Eur. J. Neurosci. 38 (2013), 2019–2029.
-
(2013)
Eur. J. Neurosci.
, vol.38
, pp. 2019-2029
-
-
Marín, O.1
-
42
-
-
84874357602
-
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
-
Markle, J.G., Frank, D.N., Mortin-Toth, S., Robertson, C.E., Feazel, L.M., Rolle-Kampczyk, U., von Bergen, M., McCoy, K.D., Macpherson, A.J., Danska, J.S., Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science 339 (2013), 1084–1088.
-
(2013)
Science
, vol.339
, pp. 1084-1088
-
-
Markle, J.G.1
Frank, D.N.2
Mortin-Toth, S.3
Robertson, C.E.4
Feazel, L.M.5
Rolle-Kampczyk, U.6
von Bergen, M.7
McCoy, K.D.8
Macpherson, A.J.9
Danska, J.S.10
-
43
-
-
84861123981
-
IRF8 is a critical transcription factor for transforming microglia into a reactive phenotype
-
Masuda, T., Tsuda, M., Yoshinaga, R., Tozaki-Saitoh, H., Ozato, K., Tamura, T., Inoue, K., IRF8 is a critical transcription factor for transforming microglia into a reactive phenotype. Cell Rep. 1 (2012), 334–340.
-
(2012)
Cell Rep.
, vol.1
, pp. 334-340
-
-
Masuda, T.1
Tsuda, M.2
Yoshinaga, R.3
Tozaki-Saitoh, H.4
Ozato, K.5
Tamura, T.6
Inoue, K.7
-
44
-
-
84976883162
-
Microglia development follows a stepwise program to regulate brain homeostasis
-
Matcovitch-Natan, O., Winter, D.R., Giladi, A., Vargas Aguilar, S., Spinrad, A., Sarrazin, S., Ben-Yehuda, H., David, E., Zelada González, F., Perrin, P., et al. Microglia development follows a stepwise program to regulate brain homeostasis. Science, 353, 2016, aad8670.
-
(2016)
Science
, vol.353
, pp. aad8670
-
-
Matcovitch-Natan, O.1
Winter, D.R.2
Giladi, A.3
Vargas Aguilar, S.4
Spinrad, A.5
Sarrazin, S.6
Ben-Yehuda, H.7
David, E.8
Zelada González, F.9
Perrin, P.10
-
45
-
-
85007013718
-
Convergence of sex differences and the neuroimmune system in autism spectrum disorder
-
McCarthy, M.M., Wright, C.L., Convergence of sex differences and the neuroimmune system in autism spectrum disorder. Biol. Psychiatry 81 (2017), 402–410.
-
(2017)
Biol. Psychiatry
, vol.81
, pp. 402-410
-
-
McCarthy, M.M.1
Wright, C.L.2
-
46
-
-
85003605084
-
P2Y12 receptor is expressed on human microglia under physiological conditions throughout development and is sensitive to neuroinflammatory diseases
-
Mildner, A., Huang, H., Radke, J., Stenzel, W., Priller, J., P2Y12 receptor is expressed on human microglia under physiological conditions throughout development and is sensitive to neuroinflammatory diseases. Glia 65 (2017), 375–387.
-
(2017)
Glia
, vol.65
, pp. 375-387
-
-
Mildner, A.1
Huang, H.2
Radke, J.3
Stenzel, W.4
Priller, J.5
-
47
-
-
0036493503
-
Requirement for MD-1 in cell surface expression of RP105/CD180 and B-cell responsiveness to lipopolysaccharide
-
Nagai, Y., Shimazu, R., Ogata, H., Akashi, S., Sudo, K., Yamasaki, H., Hayashi, S., Iwakura, Y., Kimoto, M., Miyake, K., Requirement for MD-1 in cell surface expression of RP105/CD180 and B-cell responsiveness to lipopolysaccharide. Blood 99 (2002), 1699–1705.
-
(2002)
Blood
, vol.99
, pp. 1699-1705
-
-
Nagai, Y.1
Shimazu, R.2
Ogata, H.3
Akashi, S.4
Sudo, K.5
Yamasaki, H.6
Hayashi, S.7
Iwakura, Y.8
Kimoto, M.9
Miyake, K.10
-
48
-
-
84994378411
-
The immune system as a novel regulator of sex differences in brain and behavioral development
-
Nelson, L.H., Lenz, K.M., The immune system as a novel regulator of sex differences in brain and behavioral development. J. Neurosci. Res. 95 (2017), 447–461.
-
(2017)
J. Neurosci. Res.
, vol.95
, pp. 447-461
-
-
Nelson, L.H.1
Lenz, K.M.2
-
49
-
-
84928927858
-
Robust enumeration of cell subsets from tissue expression profiles
-
Newman, A.M., Liu, C.L., Green, M.R., Gentles, A.J., Feng, W., Xu, Y., Hoang, C.D., Diehn, M., Alizadeh, A.A., Robust enumeration of cell subsets from tissue expression profiles. Nat. Methods 12 (2015), 453–457.
-
(2015)
Nat. Methods
, vol.12
, pp. 453-457
-
-
Newman, A.M.1
Liu, C.L.2
Green, M.R.3
Gentles, A.J.4
Feng, W.5
Xu, Y.6
Hoang, C.D.7
Diehn, M.8
Alizadeh, A.A.9
-
50
-
-
84903766845
-
Gender differences in autoimmune disease
-
Ngo, S.T., Steyn, F.J., McCombe, P.A., Gender differences in autoimmune disease. Front. Neuroendocrinol. 35 (2014), 347–369.
-
(2014)
Front. Neuroendocrinol.
, vol.35
, pp. 347-369
-
-
Ngo, S.T.1
Steyn, F.J.2
McCombe, P.A.3
-
51
-
-
84876967933
-
Gender differences in schizophrenia and first-episode psychosis: a comprehensive literature review
-
Ochoa, S., Usall, J., Cobo, J., Labad, X., Kulkarni, J., Gender differences in schizophrenia and first-episode psychosis: a comprehensive literature review. Schizophr. Res. Treatment, 2012, 2012, 916198.
-
(2012)
Schizophr. Res. Treatment
, vol.2012
, pp. 916198
-
-
Ochoa, S.1
Usall, J.2
Cobo, J.3
Labad, X.4
Kulkarni, J.5
-
52
-
-
84891677425
-
Full-length RNA-seq from single cells using Smart-seq2
-
Picelli, S., Faridani, O.R., Björklund, A.K., Winberg, G., Sagasser, S., Sandberg, R., Full-length RNA-seq from single cells using Smart-seq2. Nat. Protoc. 9 (2014), 171–181.
-
(2014)
Nat. Protoc.
, vol.9
, pp. 171-181
-
-
Picelli, S.1
Faridani, O.R.2
Björklund, A.K.3
Winberg, G.4
Sagasser, S.5
Sandberg, R.6
-
53
-
-
85016269660
-
Ontogeny and homeostasis of CNS myeloid cells
-
Prinz, M., Erny, D., Hagemeyer, N., Ontogeny and homeostasis of CNS myeloid cells. Nat. Immunol. 18 (2017), 385–392.
-
(2017)
Nat. Immunol.
, vol.18
, pp. 385-392
-
-
Prinz, M.1
Erny, D.2
Hagemeyer, N.3
-
54
-
-
84953307232
-
Microglia in health and disease
-
Ransohoff, R.M., El Khoury, J., Microglia in health and disease. Cold Spring Harb. Perspect. Biol., 8, 2015, a020560.
-
(2015)
Cold Spring Harb. Perspect. Biol.
, vol.8
, pp. a020560
-
-
Ransohoff, R.M.1
El Khoury, J.2
-
55
-
-
84995451121
-
The indispensable roles of microglia and astrocytes during brain development
-
Reemst, K., Noctor, S.C., Lucassen, P.J., Hol, E.M., The indispensable roles of microglia and astrocytes during brain development. Front. Hum. Neurosci., 10, 2016, 566.
-
(2016)
Front. Hum. Neurosci.
, vol.10
, pp. 566
-
-
Reemst, K.1
Noctor, S.C.2
Lucassen, P.J.3
Hol, E.M.4
-
56
-
-
75249087100
-
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J., Smyth, G.K., edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26 (2010), 139–140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
57
-
-
85031823110
-
Wild mouse gut microbiota promotes host fitness and improves disease resistance
-
Rosshart, S.P., Vassallo, B.G., Angeletti, D., Hutchinson, D.S., Morgan, A.P., Takeda, K., Hickman, H.D., McCulloch, J.A., Badger, J.H., Ajami, N.J., et al. Wild mouse gut microbiota promotes host fitness and improves disease resistance. Cell 171 (2017), 1015–1028.
-
(2017)
Cell
, vol.171
, pp. 1015-1028
-
-
Rosshart, S.P.1
Vassallo, B.G.2
Angeletti, D.3
Hutchinson, D.S.4
Morgan, A.P.5
Takeda, K.6
Hickman, H.D.7
McCulloch, J.A.8
Badger, J.H.9
Ajami, N.J.10
-
58
-
-
38849199681
-
Visualizing spatiotemporal dynamics of multicellular cell-cycle progression
-
Sakaue-Sawano, A., Kurokawa, H., Morimura, T., Hanyu, A., Hama, H., Osawa, H., Kashiwagi, S., Fukami, K., Miyata, T., Miyoshi, H., et al. Visualizing spatiotemporal dynamics of multicellular cell-cycle progression. Cell 132 (2008), 487–498.
-
(2008)
Cell
, vol.132
, pp. 487-498
-
-
Sakaue-Sawano, A.1
Kurokawa, H.2
Morimura, T.3
Hanyu, A.4
Hama, H.5
Osawa, H.6
Kashiwagi, S.7
Fukami, K.8
Miyata, T.9
Miyoshi, H.10
-
59
-
-
85001930733
-
Gut microbiota regulate motor deficits and neuroinflammation in a model of Parkinson's disease
-
Sampson, T.R., Debelius, J.W., Thron, T., Janssen, S., Shastri, G.G., Ilhan, Z.E., Challis, C., Schretter, C.E., Rocha, S., Gradinaru, V., et al. Gut microbiota regulate motor deficits and neuroinflammation in a model of Parkinson's disease. Cell 167 (2016), 1469–1480.
-
(2016)
Cell
, vol.167
, pp. 1469-1480
-
-
Sampson, T.R.1
Debelius, J.W.2
Thron, T.3
Janssen, S.4
Shastri, G.G.5
Ilhan, Z.E.6
Challis, C.7
Schretter, C.E.8
Rocha, S.9
Gradinaru, V.10
-
60
-
-
84943279510
-
Microglia function in central nervous system development and plasticity
-
Schafer, D.P., Stevens, B., Microglia function in central nervous system development and plasticity. Cold Spring Harb. Perspect. Biol., 7, 2015, a020545.
-
(2015)
Cold Spring Harb. Perspect. Biol.
, vol.7
, pp. a020545
-
-
Schafer, D.P.1
Stevens, B.2
-
61
-
-
84857917135
-
Sex differences in microglial colonization of the developing rat brain
-
Schwarz, J.M., Sholar, P.W., Bilbo, S.D., Sex differences in microglial colonization of the developing rat brain. J. Neurochem. 120 (2012), 948–963.
-
(2012)
J. Neurochem.
, vol.120
, pp. 948-963
-
-
Schwarz, J.M.1
Sholar, P.W.2
Bilbo, S.D.3
-
62
-
-
85006930186
-
Impact of the gut microbiota on enhancer accessibility in gut intraepithelial lymphocytes
-
Semenkovich, N.P., Planer, J.D., Ahern, P.P., Griffin, N.W., Lin, C.Y., Gordon, J.I., Impact of the gut microbiota on enhancer accessibility in gut intraepithelial lymphocytes. Proc. Natl. Acad. Sci. USA 113 (2016), 14805–14810.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 14805-14810
-
-
Semenkovich, N.P.1
Planer, J.D.2
Ahern, P.P.3
Griffin, N.W.4
Lin, C.Y.5
Gordon, J.I.6
-
63
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B., Ideker, T., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13 (2003), 2498–2504.
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
64
-
-
84994792268
-
The central nervous system and the gut microbiome
-
Sharon, G., Sampson, T.R., Geschwind, D.H., Mazmanian, S.K., The central nervous system and the gut microbiome. Cell 167 (2016), 915–932.
-
(2016)
Cell
, vol.167
, pp. 915-932
-
-
Sharon, G.1
Sampson, T.R.2
Geschwind, D.H.3
Mazmanian, S.K.4
-
65
-
-
84945470816
-
Differential roles of resident microglia and infiltrating monocytes in murine CNS autoimmunity
-
Shemer, A., Jung, S., Differential roles of resident microglia and infiltrating monocytes in murine CNS autoimmunity. Semin. Immunopathol. 37 (2015), 613–623.
-
(2015)
Semin. Immunopathol.
, vol.37
, pp. 613-623
-
-
Shemer, A.1
Jung, S.2
-
66
-
-
84922519429
-
Microglia modulate wiring of the embryonic forebrain
-
Squarzoni, P., Oller, G., Hoeffel, G., Pont-Lezica, L., Rostaing, P., Low, D., Bessis, A., Ginhoux, F., Garel, S., Microglia modulate wiring of the embryonic forebrain. Cell Rep. 8 (2014), 1271–1279.
-
(2014)
Cell Rep.
, vol.8
, pp. 1271-1279
-
-
Squarzoni, P.1
Oller, G.2
Hoeffel, G.3
Pont-Lezica, L.4
Rostaing, P.5
Low, D.6
Bessis, A.7
Ginhoux, F.8
Garel, S.9
-
67
-
-
84871260751
-
Complex invasion pattern of the cerebral cortex bymicroglial cells during development of the mouse embryo
-
Swinnen, N., Smolders, S., Avila, A., Notelaers, K., Paesen, R., Ameloot, M., Brône, B., Legendre, P., Rigo, J.M., Complex invasion pattern of the cerebral cortex bymicroglial cells during development of the mouse embryo. Glia 61 (2013), 150–163.
-
(2013)
Glia
, vol.61
, pp. 150-163
-
-
Swinnen, N.1
Smolders, S.2
Avila, A.3
Notelaers, K.4
Paesen, R.5
Ameloot, M.6
Brône, B.7
Legendre, P.8
Rigo, J.M.9
-
68
-
-
2542429189
-
Identification of kidney mesenchymal genes by a combination of microarray analysis and Sall1-GFP knockin mice
-
Takasato, M., Osafune, K., Matsumoto, Y., Kataoka, Y., Yoshida, N., Meguro, H., Aburatani, H., Asashima, M., Nishinakamura, R., Identification of kidney mesenchymal genes by a combination of microarray analysis and Sall1-GFP knockin mice. Mech. Dev. 121 (2004), 547–557.
-
(2004)
Mech. Dev.
, vol.121
, pp. 547-557
-
-
Takasato, M.1
Osafune, K.2
Matsumoto, Y.3
Kataoka, Y.4
Yoshida, N.5
Meguro, H.6
Aburatani, H.7
Asashima, M.8
Nishinakamura, R.9
-
69
-
-
85017522662
-
A new fate mapping system reveals context-dependent random or clonal expansion of microglia
-
Tay, T.L., Mai, D., Dautzenberg, J., Fernández-Klett, F., Lin, G., Sagar, Datta, M., Drougard, A., Stempfl, T., Ardura-Fabregat, A., et al. A new fate mapping system reveals context-dependent random or clonal expansion of microglia. Nat. Neurosci. 20 (2017), 793–803.
-
(2017)
Nat. Neurosci.
, vol.20
, pp. 793-803
-
-
Tay, T.L.1
Mai, D.2
Dautzenberg, J.3
Fernández-Klett, F.4
Lin, G.5
Sagar6
Datta, M.7
Drougard, A.8
Stempfl, T.9
Ardura-Fabregat, A.10
-
70
-
-
84971467548
-
Microglia across the lifespan: from origin to function in brain development, plasticity and cognition
-
Tay, T.L., Savage, J.C., Hui, C.W., Bisht, K., Tremblay, M.E., Microglia across the lifespan: from origin to function in brain development, plasticity and cognition. J. Physiol. 595 (2017), 1929–1945.
-
(2017)
J. Physiol.
, vol.595
, pp. 1929-1945
-
-
Tay, T.L.1
Savage, J.C.2
Hui, C.W.3
Bisht, K.4
Tremblay, M.E.5
-
71
-
-
73349116606
-
Network visualization and analysis of gene expression data using BioLayout Express(3D)
-
Theocharidis, A., van Dongen, S., Enright, A.J., Freeman, T.C., Network visualization and analysis of gene expression data using BioLayout Express(3D). Nat. Protoc. 4 (2009), 1535–1550.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 1535-1550
-
-
Theocharidis, A.1
van Dongen, S.2
Enright, A.J.3
Freeman, T.C.4
-
72
-
-
85032230436
-
On place and time: microglia in embryonic and perinatal brain development
-
Thion, M.S., Garel, S., On place and time: microglia in embryonic and perinatal brain development. Curr. Opin. Neurobiol. 47 (2017), 121–130.
-
(2017)
Curr. Opin. Neurobiol.
, vol.47
, pp. 121-130
-
-
Thion, M.S.1
Garel, S.2
-
73
-
-
84876939061
-
Layer V cortical neurons require microglial support for survival during postnatal development
-
Ueno, M., Fujita, Y., Tanaka, T., Nakamura, Y., Kikuta, J., Ishii, M., Yamashita, T., Layer V cortical neurons require microglial support for survival during postnatal development. Nat. Neurosci. 16 (2013), 543–551.
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 543-551
-
-
Ueno, M.1
Fujita, Y.2
Tanaka, T.3
Nakamura, Y.4
Kikuta, J.5
Ishii, M.6
Yamashita, T.7
-
74
-
-
85018332809
-
S100-alarmin-induced innate immune programming protects newborn infants from sepsis
-
Ulas, T., Pirr, S., Fehlhaber, B., Bickes, M.S., Loof, T.G., Vogl, T., Mellinger, L., Heinemann, A.S., Burgmann, J., Schöning, J., et al. S100-alarmin-induced innate immune programming protects newborn infants from sepsis. Nat. Immunol. 18 (2017), 622–632.
-
(2017)
Nat. Immunol.
, vol.18
, pp. 622-632
-
-
Ulas, T.1
Pirr, S.2
Fehlhaber, B.3
Bickes, M.S.4
Loof, T.G.5
Vogl, T.6
Mellinger, L.7
Heinemann, A.S.8
Burgmann, J.9
Schöning, J.10
-
75
-
-
85006862901
-
Role of microglia disturbances and immune-related marker abnormalities in cortical circuitry dysfunction in schizophrenia
-
Volk, D.W., Role of microglia disturbances and immune-related marker abnormalities in cortical circuitry dysfunction in schizophrenia. Neurobiol. Dis. 99 (2017), 58–65.
-
(2017)
Neurobiol. Dis.
, vol.99
, pp. 58-65
-
-
Volk, D.W.1
-
76
-
-
85013067863
-
Microglia in physiology and disease
-
Wolf, S.A., Boddeke, H.W., Kettenmann, H., Microglia in physiology and disease. Annu. Rev. Physiol. 79 (2017), 619–643.
-
(2017)
Annu. Rev. Physiol.
, vol.79
, pp. 619-643
-
-
Wolf, S.A.1
Boddeke, H.W.2
Kettenmann, H.3
-
77
-
-
84872765982
-
Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis
-
Yona, S., Kim, K.W., Wolf, Y., Mildner, A., Varol, D., Breker, M., Strauss-Ayali, D., Viukov, S., Guilliams, M., Misharin, A., et al. Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis. Immunity 38 (2013), 79–91.
-
(2013)
Immunity
, vol.38
, pp. 79-91
-
-
Yona, S.1
Kim, K.W.2
Wolf, Y.3
Mildner, A.4
Varol, D.5
Breker, M.6
Strauss-Ayali, D.7
Viukov, S.8
Guilliams, M.9
Misharin, A.10
-
78
-
-
84860718683
-
clusterProfiler: an R package for comparing biological themes among gene clusters
-
Yu, G., Wang, L.G., Han, Y., He, Q.Y., clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 16 (2012), 284–287.
-
(2012)
OMICS
, vol.16
, pp. 284-287
-
-
Yu, G.1
Wang, L.G.2
Han, Y.3
He, Q.Y.4
-
79
-
-
84882610339
-
Gender bias in autoimmunity is influenced by microbiota
-
Yurkovetskiy, L., Burrows, M., Khan, A.A., Graham, L., Volchkov, P., Becker, L., Antonopoulos, D., Umesaki, Y., Chervonsky, A.V., Gender bias in autoimmunity is influenced by microbiota. Immunity 39 (2013), 400–412.
-
(2013)
Immunity
, vol.39
, pp. 400-412
-
-
Yurkovetskiy, L.1
Burrows, M.2
Khan, A.A.3
Graham, L.4
Volchkov, P.5
Becker, L.6
Antonopoulos, D.7
Umesaki, Y.8
Chervonsky, A.V.9
-
80
-
-
84994356275
-
Sex and gender differences in central nervous system-related disorders
-
Zagni, E., Simoni, L., Colombo, D., Sex and gender differences in central nervous system-related disorders. Neurosci. J., 2016, 2016, 2827090.
-
(2016)
Neurosci. J.
, vol.2016
, pp. 2827090
-
-
Zagni, E.1
Simoni, L.2
Colombo, D.3
-
81
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C., Myers, R.M., Brown, M., Li, W., Liu, X.S., Model-based analysis of ChIP-seq (MACS). Genome Biol., 9, 2008, R137.
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
|