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Volumn 11, Issue 1, 2017, Pages

Estimating drivers of cell state transitions using gene regulatory network models

Author keywords

Chronic obstructive pulmonary disease; Gene regulatory network inference; Genomics

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 85038082059     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/s12918-017-0517-y     Document Type: Article
Times cited : (18)

References (39)
  • 4
    • 84866467177 scopus 로고    scopus 로고
    • Integrating literature-constrained and data-driven inference of signalling networks
    • Eduati F, De Las Rivas J, Di Camillo B, Toffolo G, Saez-Rodriguez J. Integrating literature-constrained and data-driven inference of signalling networks. Bioinformatics. 2012; 28(18):2311-7.
    • (2012) Bioinformatics , vol.28 , Issue.18 , pp. 2311-2317
    • Eduati, F.1    De Las Rivas, J.2    Di Camillo, B.3    Toffolo, G.4    Saez-Rodriguez, J.5
  • 8
    • 84878605343 scopus 로고    scopus 로고
    • Passing messages between biological networks to refine predicted interactions
    • Glass K, Huttenhower C, Quackenbush J, Yuan GC. Passing messages between biological networks to refine predicted interactions. PloS ONE. 2013; 8(5):64832.
    • (2013) PloS ONE , vol.8 , Issue.5 , pp. 64832
    • Glass, K.1    Huttenhower, C.2    Quackenbush, J.3    Yuan, G.C.4
  • 9
    • 0042706147 scopus 로고    scopus 로고
    • Genomic analysis of gene expression relationships in transcriptional regulatory networks
    • Yu H, Luscombe NM, Qian J, Gerstein M. Genomic analysis of gene expression relationships in transcriptional regulatory networks. Trends Genet. 2003; 19(8):422-7.
    • (2003) Trends Genet , vol.19 , Issue.8 , pp. 422-427
    • Yu, H.1    Luscombe, N.M.2    Qian, J.3    Gerstein, M.4
  • 10
    • 0142179209 scopus 로고    scopus 로고
    • Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data
    • Qian J, Lin J, Luscombe NM, Yu H, Gerstein M. Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data. Bioinformatics. 2003; 19(15):1917-26.
    • (2003) Bioinformatics , vol.19 , Issue.15 , pp. 1917-1926
    • Qian, J.1    Lin, J.2    Luscombe, N.M.3    Yu, H.4    Gerstein, M.5
  • 12
    • 85038103721 scopus 로고    scopus 로고
    • Network-based approaches that exploit inferred transcription factor activity to analyze the impact of genetic variation on gene expression
    • Bussemaker HJ, Causton HC, Fazlollahi M, Lee E, Muroff I. Network-based approaches that exploit inferred transcription factor activity to analyze the impact of genetic variation on gene expression. Curr Opin Syst Biol. 2017; 2:98-102.
    • (2017) Curr Opin Syst Biol , vol.2 , pp. 98-102
    • Bussemaker, H.J.1    Causton, H.C.2    Fazlollahi, M.3    Lee, E.4    Muroff, I.5
  • 13
    • 84930607351 scopus 로고    scopus 로고
    • Sharing and specificity of co-expression networks across 35 human tissues
    • Pierson E, Koller D, Battle A, Mostafavi S, Consortium G, et al.Sharing and specificity of co-expression networks across 35 human tissues. PLoS Comput Biol. 2015; 11(5):1004220.
    • (2015) PLoS Comput Biol , vol.11 , Issue.5 , pp. 1004220
    • Pierson, E.1    Koller, D.2    Battle, A.3    Mostafavi, S.4    Consortium, G.5
  • 14
    • 84991270631 scopus 로고    scopus 로고
    • Identifying gene regulatory network rewiring using latent differential graphical models
    • Tian D, Gu Q, Ma J. Identifying gene regulatory network rewiring using latent differential graphical models. Nucleic Acids Res. 2016; 44(17):140-0.
    • (2016) Nucleic Acids Res , vol.44 , Issue.17 , pp. 140-140
    • Tian, D.1    Gu, Q.2    Ma, J.3
  • 15
    • 85046412751 scopus 로고    scopus 로고
    • Netdiff-bayesian model selection for differential gene regulatory network inference
    • Thorne T. Netdiff-bayesian model selection for differential gene regulatory network inference. Sci Rep. 2016; 6:39224.
    • (2016) Sci Rep , vol.6 , pp. 39224
    • Thorne, T.1
  • 16
    • 84907501962 scopus 로고    scopus 로고
    • Altered gene expression in blood and sputum in copd frequent exacerbators in the eclipse cohort
    • Singh D, Fox SM, Tal-Singer R, Bates S, Riley JH, Celli B. Altered gene expression in blood and sputum in copd frequent exacerbators in the eclipse cohort. PloS ONE. 2014; 9(9):107381.
    • (2014) PloS ONE , vol.9 , Issue.9 , pp. 107381
    • Singh, D.1    Fox, S.M.2    Tal-Singer, R.3    Bates, S.4    Riley, J.H.5    Celli, B.6
  • 20
    • 63449101907 scopus 로고    scopus 로고
    • A genome-wide association study in chronic obstructive pulmonary disease (copd): identification of two major susceptibility loci
    • Pillai SG, Ge D, Zhu G, Kong X, Shianna KV, Need AC, Feng S, Hersh CP, Bakke P, Gulsvik A, et al.A genome-wide association study in chronic obstructive pulmonary disease (copd): identification of two major susceptibility loci. PLoS Genet. 2009; 5(3):1000421.
    • (2009) PLoS Genet , vol.5 , Issue.3 , pp. 1000421
    • Pillai, S.G.1    Ge, D.2    Zhu, G.3    Kong, X.4    Shianna, K.V.5    Need, A.C.6    Feng, S.7    Hersh, C.P.8    Bakke, P.9    Gulsvik, A.10
  • 21
    • 85038083168 scopus 로고    scopus 로고
    • Accessed 2 Feb 2016
    • Lung genomics research consortium (lgrc). 2015. http://www.lung-genomics.org/. Accessed 2 Feb 2016.
    • (2015)
  • 25
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol. 2005; 4(1):Article17.
    • (2005) Stat Appl Genet Mol Biol , vol.4 , Issue.1
    • Zhang, B.1    Horvath, S.2
  • 27
    • 84975129723 scopus 로고    scopus 로고
    • Bridging lung development with chronic obstructive pulmonary disease. relevance of developmental pathways in chronic obstructive pulmonary disease pathogenesis
    • Boucherat O, Morissette M, Provencher S, Bonnet S, F M.Bridging lung development with chronic obstructive pulmonary disease. relevance of developmental pathways in chronic obstructive pulmonary disease pathogenesis. Am J Respir Crit Care Med. 2016; 193(4):362-75.
    • (2016) Am J Respir Crit Care Med , vol.193 , Issue.4 , pp. 362-375
    • Boucherat, O.1    Morissette, M.2    Provencher, S.3    Bonnet, S.4
  • 29
    • 0033550316 scopus 로고    scopus 로고
    • Transcription factors of the sp1 family: interaction with e2f and regulation of the murine thymidine kinase promoter
    • Rotheneder H, Geymayer S, Haidweger E. Transcription factors of the sp1 family: interaction with e2f and regulation of the murine thymidine kinase promoter. J Mol Biol. 1999; 293(5):1005-15.
    • (1999) J Mol Biol , vol.293 , Issue.5 , pp. 1005-1015
    • Rotheneder, H.1    Geymayer, S.2    Haidweger, E.3
  • 30
    • 0029926303 scopus 로고    scopus 로고
    • Interaction of sp1 with the growth-and cell cycle-regulated transcription factor e2f
    • Karlseder J, Rotheneder H, Wintersberger E. Interaction of sp1 with the growth-and cell cycle-regulated transcription factor e2f. Mol Cell Biol. 1996; 16(4):1659-67.
    • (1996) Mol Cell Biol , vol.16 , Issue.4 , pp. 1659-1667
    • Karlseder, J.1    Rotheneder, H.2    Wintersberger, E.3
  • 33
    • 0029051835 scopus 로고
    • Structure, expression, and chromosomal assignment of the human gene encoding nuclear respiratory factor 1
    • Gopalakrishnan L, Scarpulla RC. Structure, expression, and chromosomal assignment of the human gene encoding nuclear respiratory factor 1. J Biol Chem. 1995; 270(30):18019-25.
    • (1995) J Biol Chem , vol.270 , Issue.30 , pp. 18019-18025
    • Gopalakrishnan, L.1    Scarpulla, R.C.2
  • 34
    • 0035830950 scopus 로고    scopus 로고
    • Sp1 and sp3 physically interact and co-operate with gabp for the activation of the utrophin promoter
    • Galvagni F, Capo S, Oliviero S. Sp1 and sp3 physically interact and co-operate with gabp for the activation of the utrophin promoter. J Mol Biol. 2001; 306(5):985-96.
    • (2001) J Mol Biol , vol.306 , Issue.5 , pp. 985-996
    • Galvagni, F.1    Capo, S.2    Oliviero, S.3
  • 35
    • 77649176945 scopus 로고    scopus 로고
    • Comparison of evolutionary algorithms in gene regulatory network model inference
    • Sîrbu A, Ruskin HJ, Crane M. Comparison of evolutionary algorithms in gene regulatory network model inference. BMC Bioinformatics. 2010; 11(1):1.
    • (2010) BMC Bioinformatics , vol.11 , Issue.1 , pp. 1
    • Sîrbu, A.1    Ruskin, H.J.2    Crane, M.3
  • 36
    • 84896257145 scopus 로고    scopus 로고
    • Switching on cilia: transcriptional networks regulating ciliogenesis
    • Choksi SP, Lauter G, Swoboda P, Roy S. Switching on cilia: transcriptional networks regulating ciliogenesis. Development. 2014; 141(7):1427-41.
    • (2014) Development , vol.141 , Issue.7 , pp. 1427-1441
    • Choksi, S.P.1    Lauter, G.2    Swoboda, P.3    Roy, S.4
  • 38
    • 4344675455 scopus 로고    scopus 로고
    • Pathophysiology of airflow limitation in chronic obstructive pulmonary disease
    • Hogg JC. Pathophysiology of airflow limitation in chronic obstructive pulmonary disease. The Lancet. 2004; 364(9435):709-21.
    • (2004) The Lancet , vol.364 , Issue.9435 , pp. 709-721
    • Hogg, J.C.1
  • 39
    • 78649735324 scopus 로고    scopus 로고
    • Airway mucus function and dysfunction
    • Fahy JV, Dickey BF. Airway mucus function and dysfunction. N Engl J Med. 2010; 363(23):2233-47.
    • (2010) N Engl J Med , vol.363 , Issue.23 , pp. 2233-2247
    • Fahy, J.V.1    Dickey, B.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.