Rapid nanopore sequencing of plasmids and resistance gene detection in clinical isolates

Journal of Clinical Microbiology

Volumn 55, Issue 12, 2017, Pages 3530-3543

  Lemon, Jamie K ^a   Khil, Pavel P ^a   Frank, Karen M ^a   Dekker, John P ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

Antibiotic resistance; Genomics; MinION; Nanopore; Plasmids

Indexed keywords

AMIKACIN; AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; AZITHROMYCIN; AZTREONAM; CEFAZOLIN; CEFEPIME; CEFOTAXIME; CEFOXITIN; CEFTAZIDIME; CEFTRIAXONE; CHLORAMPHENICOL; CIPROFLOXACIN; COTRIMOXAZOLE; DORIPENEM; DOXYCYCLINE; ERTAPENEM; FOSFOMYCIN; GENTAMICIN; IMIPENEM; LEVOFLOXACIN; MEROPENEM; PIPERACILLIN PLUS TAZOBACTAM; PLASMID DNA; TETRACYCLINE; TOBRAMYCIN;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; CLINICAL LABORATORY; DNA SEQUENCE; EXTENDED SPECTRUM BETA LACTAMASE PRODUCING ESCHERICHIA COLI; GENE IDENTIFICATION; GENE SEQUENCE; GENOMICS; KLEBSIELLA PNEUMONIAE; LABORATORY TEST; MEASUREMENT ACCURACY; NONHUMAN; PHENOTYPE; PLASMID; PRIORITY JOURNAL; TURNAROUND TIME; WORKFLOW; ANTIBIOTIC RESISTANCE; BACTERIAL INFECTION; ESCHERICHIA COLI; EVALUATION STUDY; GENETICS; ISOLATION AND PURIFICATION; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; NANOPORE; PROCEDURES; TIME FACTOR;

BACTERIAL INFECTIONS; DRUG RESISTANCE, BACTERIAL; ESCHERICHIA COLI; GENES, BACTERIAL; KLEBSIELLA PNEUMONIAE; MICROBIAL SENSITIVITY TESTS; NANOPORES; PLASMIDS; SEQUENCE ANALYSIS, DNA; TIME FACTORS; WORKFLOW;

EID: 85036642270     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01069-17     Document Type: Article

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