de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

GigaScience

Volumn 6, Issue 2, 2017, Pages

  Istace, Benjamin ^a   Friedrich, Anne ^b   d'Agata, Léo ^a   Faye, Sébastien ^a   Payen, Emilie ^a   Beluche, Odette ^a   Caradec, Claudia ^b   Davidas, Sabrina ^a   Cruaud, Corinne ^a   Liti, Gianni ^c   Lemainque, Arnaud ^a   Engelen, Stefan ^a   Wincker, Patrick ^a,d,e   Schacherer, Joseph ^b   Aury, Jean Marc ^a  

^a DIF   (France)

^b UNIVERSITÉ DE STRASBOURG   (France)

^c UNIVERSITY OF NICE SOPHIA ANTIPOLIS   (France)

^d UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

^e CNRS   (France)

Author keywords

De novo assembly; Genome finishing; MinION device; Nanopore sequencing; Oxford Nanopore; Structural variations; Transposable elements

Indexed keywords

DNA FRAGMENT; FUNGAL DNA; TRANSPOSON;

ARTICLE; CHROMOSOME 12; CHROMOSOME 3; CHROMOSOME ANALYSIS; FUNGAL GENOME; FUNGAL STRAIN; FUNGUS ISOLATION; GENE INSERTION; GENE SEQUENCE; GENETIC VARIATION; GENOME ANALYSIS; MITOCHONDRIAL GENOME; NANOPORE; NONHUMAN; POPULATION GENETICS; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; TRANSPOSON; BIOLOGY; CHROMOSOME; DNA SEQUENCE; GENE DOSAGE; GENETIC RECOMBINATION; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; PROCEDURES; YEAST;

CHROMOSOMES, FUNGAL; COMPUTATIONAL BIOLOGY; DNA TRANSPOSABLE ELEMENTS; DNA, FUNGAL; GENE DOSAGE; GENOME, FUNGAL; GENOME, MITOCHONDRIAL; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; YEASTS;

EID: 85021859981     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1093/gigascience/giw018     Document Type: Article

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