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Volumn 60, Issue 11, 2016, Pages 6780-6786

Characterization of two multidrug-resistant IncA/C plasmids from the 1960s by using the MinION sequencer device

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC RESISTANCE; ANTIBIOTIC RESISTANCE ISLAND; APHA1B GENE; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENE; BACTERIAL GENOME; BLA GENE; CONTROLLED STUDY; DNA TRANSPOSITION; GENE CLUSTER; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC ANALYZER; GENETIC RECOMBINATION; GENOMIC ISLAND; KFRA GENE; MER GENE; MULTIDRUG RESISTANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLASMID; PRIORITY JOURNAL; SEQUENCER DEVICE; BACTERIUM CONJUGATION; CHEMISTRY; DNA SEQUENCE; DRUG EFFECTS; ESCHERICHIA COLI; GENETICS; GROWTH, DEVELOPMENT AND AGING; HISTORY; LABORATORY AUTOMATION; METABOLISM; TRANSPOSON;

EID: 84994852925     PISSN: 00664804     EISSN: 10986596     Source Type: Journal    
DOI: 10.1128/AAC.01121-16     Document Type: Article
Times cited : (17)

References (44)
  • 1
    • 84888117308 scopus 로고    scopus 로고
    • IncA/C plasmids: An emerging threat to human and animal health?
    • Johnson TJ, Lang KS. 2012. IncA/C plasmids: An emerging threat to human and animal health? Mob Genet Elements 2:55-58.
    • (2012) Mob Genet Elements , vol.2 , pp. 55-58
    • Johnson, T.J.1    Lang, K.S.2
  • 2
    • 84937795870 scopus 로고    scopus 로고
    • The A to Z of A/C plasmids
    • Harmer CJ, Hall RM. 2015. The A to Z of A/C plasmids. Plasmid 80:63-82. http://dx.doi.org/10.1016/j.plasmid.2015.04.003.
    • (2015) Plasmid , vol.80 , pp. 63-82
    • Harmer, C.J.1    Hall, R.M.2
  • 3
    • 67049109154 scopus 로고    scopus 로고
    • Resistance plasmid families in Enterobacteriaceae
    • Carattoli A. 2009. Resistance plasmid families in Enterobacteriaceae. Antimicrob Agents Chemother 53:2227-2238. http://dx.doi.org/10.1128/AAC.01707-08.
    • (2009) Antimicrob Agents Chemother , vol.53 , pp. 2227-2238
    • Carattoli, A.1
  • 4
    • 84880748808 scopus 로고    scopus 로고
    • Plasmids and the spread of resistance
    • Carattoli A. 2013. Plasmids and the spread of resistance. Int J Med Microbiol 303:298-304. http://dx.doi.org/10.1016/j.ijmm.2013.02.001.
    • (2013) Int J Med Microbiol , vol.303 , pp. 298-304
    • Carattoli, A.1
  • 5
    • 15944382319 scopus 로고    scopus 로고
    • The Salmonella genomic island 1 is an integrative mobilizable element
    • Doublet B, Boyd D, Mulvey MR, Cloeckaert A. 2005. The Salmonella genomic island 1 is an integrative mobilizable element. Mol Microbiol 55:1911-1924. http://dx.doi.org/10.1111/j.1365-2958.2005.04520.x.
    • (2005) Mol Microbiol , vol.55 , pp. 1911-1924
    • Doublet, B.1    Boyd, D.2    Mulvey, M.R.3    Cloeckaert, A.4
  • 6
    • 84908340387 scopus 로고    scopus 로고
    • The Master activator of IncA/C conjugative plasmids stimulates genomic islands and multidrug resistance dissemination
    • Carraro N, Matteau D, Luo P, Rodrigue S, Burrus V. 2014. The Master activator of IncA/C conjugative plasmids stimulates genomic islands and multidrug resistance dissemination. PLoS Genet 10:e1004714. http://dx.doi.org/10.1371/journal.pgen.1004714.
    • (2014) PLoS Genet , vol.10 , pp. e1004714
    • Carraro, N.1    Matteau, D.2    Luo, P.3    Rodrigue, S.4    Burrus, V.5
  • 8
    • 0015577750 scopus 로고
    • R factors of compatibility group A
    • Datta N, Hedges RW. 1973. R factors of compatibility group A. J Gen Microbiol 74:335-337.
    • (1973) J Gen Microbiol , vol.74 , pp. 335-337
    • Datta, N.1    Hedges, R.W.2
  • 9
    • 84977568634 scopus 로고    scopus 로고
    • PDGO100, a type 1 IncC plasmid from 1981 carrying ARI-A and a Tn1696-like transposon in a novel integrating element
    • 16 June
    • Harmer CJ, Partridge SR, Hall RM. 16 June 2016. pDGO100, a type 1 IncC plasmid from 1981 carrying ARI-A and a Tn1696-like transposon in a novel integrating element. Plasmid http://dx.doi.org/10.1016/j.plasmid.2016.06.002.
    • (2016) Plasmid
    • Harmer, C.J.1    Partridge, S.R.2    Hall, R.M.3
  • 10
    • 84907477390 scopus 로고    scopus 로고
    • PRMH760, a precursor of A/C2 plasmids carrying blaCMY and blaNDM genes
    • Harmer CJ, Hall RM. 2014. pRMH760, a precursor of A/C2 plasmids carrying blaCMY and blaNDM genes. Microb Drug Resist 20:416-423. http://dx.doi.org/10.1089/mdr.2014.0012.
    • (2014) Microb Drug Resist , vol.20 , pp. 416-423
    • Harmer, C.J.1    Hall, R.M.2
  • 13
    • 80051690984 scopus 로고    scopus 로고
    • GIsul2, a genomic island carrying the sul2 sulphonamide resistance gene and the small mobile element CR2 found in the Enterobacter cloacae subspecies cloacae type strain ATCC 13047 from 1890, Shigella flexneri ATCC 700930 from 1954 and Acinetobacter baumannii ATCC 17978 from 1951
    • Nigro SJ, Hall RM. 2011. GIsul2, a genomic island carrying the sul2 sulphonamide resistance gene and the small mobile element CR2 found in the Enterobacter cloacae subspecies cloacae type strain ATCC 13047 from 1890, Shigella flexneri ATCC 700930 from 1954 and Acinetobacter baumannii ATCC 17978 from 1951. J Antimicrob Chemother 66:2175-2176. http://dx.doi.org/10.1093/jac/dkr230.
    • (2011) J Antimicrob Chemother , vol.66 , pp. 2175-2176
    • Nigro, S.J.1    Hall, R.M.2
  • 14
    • 84954536734 scopus 로고    scopus 로고
    • Minlon: New, long read, portable nucleic acid sequencing device
    • Ward AC, Kim W. 2015. Minlon: new, long read, portable nucleic acid sequencing device. J Bacteriol Virol 45:285-303. http://dx.doi.org/10.4167/jbv.2015.45.4.285.
    • (2015) J Bacteriol Virol , vol.45 , pp. 285-303
    • Ward, A.C.1    Kim, W.2
  • 15
    • 84946557268 scopus 로고    scopus 로고
    • Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
    • Goodwin S, Gurtowski J, Ethe-Sayers S, Deshpande P, Schatz MC, McCombie WR. 2015. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res 25: 1750-1756. http://dx.doi.org/10.1101/gr.191395.115.
    • (2015) Genome Res , vol.25 , pp. 1750-1756
    • Goodwin, S.1    Gurtowski, J.2    Ethe-Sayers, S.3    Deshpande, P.4    Schatz, M.C.5    McCombie, W.R.6
  • 16
    • 84938421951 scopus 로고    scopus 로고
    • A complete bacterial genome assembled de novo using only nanopore sequencing data
    • Loman NJ, Quick J, Simpson JT. 2015. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nat Methods 12:733-735. http://dx.doi.org/10.1038/nmeth.3444.
    • (2015) Nat Methods , vol.12 , pp. 733-735
    • Loman, N.J.1    Quick, J.2    Simpson, J.T.3
  • 17
    • 84942520038 scopus 로고    scopus 로고
    • A reference bacterial genome dataset generated on the MinION(TM) portable single-molecule nanopore sequencer
    • Quick J, Quinlan AR, Loman NJ. 2014. A reference bacterial genome dataset generated on the MinION(TM) portable single-molecule nanopore sequencer. Gigascience 3:22. http://dx.doi.org/10.1186/2047-217X-3-22.
    • (2014) Gigascience , vol.3 , pp. 22
    • Quick, J.1    Quinlan, A.R.2    Loman, N.J.3
  • 18
  • 19
    • 84924388692 scopus 로고    scopus 로고
    • MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
    • Ashton PM, Nair S, Dallman T, Rubino S, Rabsch W, Mwaigwisya S, Wain J, O'Grady J. 2015. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nat Biotechnol 33:296-300. http://dx.doi.org/10.1038/nbt.3103.
    • (2015) Nat Biotechnol , vol.33 , pp. 296-300
    • Ashton, P.M.1    Nair, S.2    Dallman, T.3    Rubino, S.4    Rabsch, W.5    Mwaigwisya, S.6    Wain, J.7    O'Grady, J.8
  • 21
    • 84954475078 scopus 로고    scopus 로고
    • Species level resolution of 16S rRNA gene amplicons sequenced through MinIONTM portable nanopore sequencer
    • Benitez-Paez A, Portune K, Sanz Y. 2015. Species level resolution of 16S rRNA gene amplicons sequenced through MinIONTM portable nanopore sequencer. bioRxiv http://dx.doi.org/10.1101/021758.
    • (2015) BioRxiv
    • Benitez-Paez, A.1    Portune, K.2    Sanz, Y.3
  • 24
    • 84943806095 scopus 로고    scopus 로고
    • Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes
    • Judge K, Harris SR, Reuter S, Parkhill J, Peacock SJ. 2015. Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes. J Antimicrob Chemother 70:2775-2778. http://dx.doi.org/10.1093/jac/dkv206.
    • (2015) J Antimicrob Chemother , vol.70 , pp. 2775-2778
    • Judge, K.1    Harris, S.R.2    Reuter, S.3    Parkhill, J.4    Peacock, S.J.5
  • 26
    • 78650903106 scopus 로고    scopus 로고
    • The Salmonella genomic island 1 is specifically mobilized in trans by the IncA/C multidrug resistance plasmid family
    • Douard G, Praud K, Cloeckaert A, Doublet B. 2010. The Salmonella genomic island 1 is specifically mobilized in trans by the IncA/C multidrug resistance plasmid family. PLoS One 5:e15302. http://dx.doi.org/10.1371/journal.pone.0015302.
    • (2010) PLoS One , vol.5 , pp. e15302
    • Douard, G.1    Praud, K.2    Cloeckaert, A.3    Doublet, B.4
  • 27
    • 0026589395 scopus 로고
    • Developmental regulation of transcription of the Bacillus subtilis ftsAZ operon
    • Gonzy-Tréboul G, Karmazyn-Campelli C, Stragier P. 1992. Developmental regulation of transcription of the Bacillus subtilis ftsAZ operon. J Mol Biol 224:967-979. http://dx.doi.org/10.1016/0022-2836(92)90463-T.
    • (1992) J Mol Biol , vol.224 , pp. 967-979
    • Gonzy-Tréboul, G.1    Karmazyn-Campelli, C.2    Stragier, P.3
  • 28
    • 84857618040 scopus 로고    scopus 로고
    • Stability, entrapment and variant formation of Salmonella genomic island 1
    • Kiss J, Nagy B, Olasz F. 2012. Stability, entrapment and variant formation of Salmonella genomic island 1. PLoS One 7:e32497. http://dx.doi.org/10.1371/journal.pone.0032497.
    • (2012) PLoS One , vol.7 , pp. e32497
    • Kiss, J.1    Nagy, B.2    Olasz, F.3
  • 29
    • 3042631307 scopus 로고    scopus 로고
    • Genome sequence assembly using trace signals and additional sequence information
    • Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence information. Ger Conf Bioinformatics 99:45-56.
    • (1999) Ger Conf Bioinformatics , vol.99 , pp. 45-56
    • Chevreux, B.1    Wetter, T.2    Suhai, S.3
  • 31
    • 79952256999 scopus 로고    scopus 로고
    • Adaptive seeds tame genomic sequence comparison
    • Kiełbasa SM, Wan R, Sato K, Horton P, Frith MC. 2011. Adaptive seeds tame genomic sequence comparison. Genome Res 21:487-493. http://dx.doi.org/10.1101/gr.113985.110.
    • (2011) Genome Res , vol.21 , pp. 487-493
    • Kiełbasa, S.M.1    Wan, R.2    Sato, K.3    Horton, P.4    Frith, M.C.5
  • 33
    • 84866865552 scopus 로고    scopus 로고
    • Multiple drug-resistant strains of Aeromonas hydrophila isolated from tilapia Farms in Thailand
    • Tipmongkolsilp N, Castillo CS del, Hikima J, Jung T-S, Kondo H, Hirono I, Aoki T. 2012. Multiple drug-resistant strains of Aeromonas hydrophila isolated from tilapia Farms in Thailand. Fish Pathol 47:56-63. http://dx.doi.org/10.3147/jsfp.47.56.
    • (2012) Fish Pathol , vol.47 , pp. 56-63
    • Tipmongkolsilp, N.1    Castillo, C.2    Hikima, J.3    Jung, T.-S.4    Kondo, H.5    Hirono, I.6    Aoki, T.7
  • 34
    • 79958843977 scopus 로고    scopus 로고
    • Aminoglycoside resistance in multiply antibiotic-resistant Acinetobacter baumannii belonging to global clone 2 from Australian hospitals
    • Nigro SJ, Post V, Hall RM. 2011. Aminoglycoside resistance in multiply antibiotic-resistant Acinetobacter baumannii belonging to global clone 2 from Australian hospitals. J Antimicrob Chemother 66:1504-1509. http://dx.doi.org/10.1093/jac/dkr163.
    • (2011) J Antimicrob Chemother , vol.66 , pp. 1504-1509
    • Nigro, S.J.1    Post, V.2    Hall, R.M.3
  • 35
    • 0016198796 scopus 로고
    • Transposition of ampicillin resistance from RP4 to other replicons
    • Hedges RW, Jacob AE. 1974. Transposition of ampicillin resistance from RP4 to other replicons. Mol Gen Genet 132:31-40. http://dx.doi.org/10.1007/BF00268228.
    • (1974) Mol Gen Genet , vol.132 , pp. 31-40
    • Hedges, R.W.1    Jacob, A.E.2
  • 36
    • 0027528606 scopus 로고
    • Nucleotide sequence analysis of a transposon (Tn5393) carrying streptomycin resistance genes in Erwinia amylovora and other gram-negative bacteria
    • Chiou CS, Jones AL. 1993. Nucleotide sequence analysis of a transposon (Tn5393) carrying streptomycin resistance genes in Erwinia amylovora and other gram-negative bacteria. J Bacteriol 175:732-740.
    • (1993) J Bacteriol , vol.175 , pp. 732-740
    • Chiou, C.S.1    Jones, A.L.2
  • 38
    • 33644873699 scopus 로고    scopus 로고
    • ISfinder: The reference centre for bacterial insertion sequences
    • Siguier P. 2006. ISfinder: The reference centre for bacterial insertion sequences. Nucleic Acids Res 34:D32-D36. http://dx.doi.org/10.1093/nar/gkj014.
    • (2006) Nucleic Acids Res , vol.34 , pp. D32-D36
    • Siguier, P.1
  • 39
    • 80052232570 scopus 로고    scopus 로고
    • Transposon Tn 5393e carrying the aphA1-containing transposon Tn 6023 upstream of strAB does not confer resistance to streptomycin
    • Cain AK, Hall RM. 2011. Transposon Tn 5393e carrying the aphA1-containing transposon Tn 6023 upstream of strAB does not confer resistance to streptomycin. Microb Drug Resist 17:389-394. http://dx.doi.org/10.1089/mdr.2011.0037.
    • (2011) Microb Drug Resist , vol.17 , pp. 389-394
    • Cain, A.K.1    Hall, R.M.2
  • 40
    • 0021744477 scopus 로고
    • Functional characterization of the prokaryotic mobile genetic element IS26
    • Iida S, Mollet B, Meyer J, Arber W. 1984. Functional characterization of the prokaryotic mobile genetic element IS26. Mol Gen Genet 198:84-89. http://dx.doi.org/10.1007/BF00328705.
    • (1984) Mol Gen Genet , vol.198 , pp. 84-89
    • Iida, S.1    Mollet, B.2    Meyer, J.3    Arber, W.4
  • 41
    • 84936970574 scopus 로고    scopus 로고
    • Insertion sequence IS26 reorganizes plasmids in clinically isolated multidrug-resistant bacteria by replicative transposition
    • He S, Hickman AB, Varani AM, Siguier P, Chandler M, Dekker JP. 2015. Insertion sequence IS26 reorganizes plasmids in clinically isolated multidrug-resistant bacteria by replicative transposition. mBio 6(3): e00762-15. http://dx.doi.org/10.1128/mBio.00762-15.
    • (2015) MBio , vol.6 , Issue.3 , pp. e00762-e00815
    • He, S.1    Hickman, A.B.2    Varani, A.M.3    Siguier, P.4    Chandler, M.5    Dekker, J.P.6
  • 42
    • 84952815272 scopus 로고    scopus 로고
    • IS26-mediated precise excision of the IS26-Apha1a translocatable unit
    • Harmer CJ, Hall RM. 2015. IS26-mediated precise excision of the IS26-Apha1a translocatable unit. mBio 6:e01866-15. http://dx.doi.org/10.1128/mBio.01866-15.
    • (2015) MBio , vol.6 , pp. e01866-e01915
    • Harmer, C.J.1    Hall, R.M.2
  • 43
    • 84881019474 scopus 로고    scopus 로고
    • Proposed model for the high rate of rearrangement and rapid migration observed in some IncA/C plasmid lineages
    • Meinersmann RJ, Lindsey RL, Bono JL, Smith TP, Oakley BB. 2013. Proposed model for the high rate of rearrangement and rapid migration observed in some IncA/C plasmid lineages. Appl Environ Microbiol 79: 4806-4814. http://dx.doi.org/10.1128/AEM.01259-13.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 4806-4814
    • Meinersmann, R.J.1    Lindsey, R.L.2    Bono, J.L.3    Smith, T.P.4    Oakley, B.B.5
  • 44
    • 84866616854 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the multidrug resistance IncA/C plasmid pR55 from Klebsiella pneumoniae isolated in 1969
    • Doublet B, Boyd D, Douard G, Praud K, Cloeckaert A, Mulvey MR. 2012. Complete nucleotide sequence of the multidrug resistance IncA/C plasmid pR55 from Klebsiella pneumoniae isolated in 1969. J Antimicrob Chemother 67:2354-2360.. http://dx.doi.org/10.1093/jac/dks251
    • (2012) J Antimicrob Chemother , vol.67 , pp. 2354-2360
    • Doublet, B.1    Boyd, D.2    Douard, G.3    Praud, K.4    Cloeckaert, A.5    Mulvey, M.R.6


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