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Volumn 7, Issue 1, 2017, Pages

STRT-seq-2i: Dual-index 5′ single cell and nucleus RNA-seq on an addressable microwell array

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 85035343759     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-017-16546-4     Document Type: Article
Times cited : (58)

References (34)
  • 1
    • 84924565530 scopus 로고    scopus 로고
    • Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
    • Zeisel, A. et al. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Science (80-.). 347 (2015).
    • (2015) Science (80-.). , vol.347
    • Zeisel, A.1
  • 2
    • 84961327715 scopus 로고    scopus 로고
    • Adult cortical cell taxonomy by single cell transcriptomics
    • Tasic, B. et al. Adult cortical cell taxonomy by single cell transcriptomics. Nat. Neurosci. https://doi.org/10.1038/nn.4216 (2016).
    • (2016) Nat. Neurosci
    • Tasic, B.1
  • 3
    • 84990876505 scopus 로고    scopus 로고
    • Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells
    • La Manno, G. et al. Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells. Cell 167, 566-580.e19 (2016).
    • (2016) Cell , vol.167 , pp. 566-566e19
    • La Manno, G.1
  • 4
    • 84974587998 scopus 로고    scopus 로고
    • Wishbone identifies bifurcating developmental trajectories from single-cell data
    • Setty, M. et al. Wishbone identifies bifurcating developmental trajectories from single-cell data. Nat. Biotechnol. 34, 637-645 (2016).
    • (2016) Nat. Biotechnol. , vol.34 , pp. 637-645
    • Setty, M.1
  • 5
    • 84950290139 scopus 로고    scopus 로고
    • Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors
    • Paul, F. et al. Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors. Cell 163, 1663-1677 (2015).
    • (2015) Cell , vol.163 , pp. 1663-1677
    • Paul, F.1
  • 6
    • 85016091925 scopus 로고    scopus 로고
    • Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
    • Tirosh, I. et al. Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma. Nature 539, 309-313 (2016).
    • (2016) Nature , vol.539 , pp. 309-313
    • Tirosh, I.1
  • 7
    • 84963614956 scopus 로고    scopus 로고
    • Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
    • Tirosh, I. et al. Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. Science (80-.). 352 (2016).
    • (2016) Science (80-.). , vol.352
    • Tirosh, I.1
  • 8
    • 84900529199 scopus 로고    scopus 로고
    • Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
    • Treutlein, B. et al. Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature 509, 371-375 (2014).
    • (2014) Nature , vol.509 , pp. 371-375
    • Treutlein, B.1
  • 9
    • 84975165639 scopus 로고    scopus 로고
    • Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system
    • Marques, S. et al. Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system. Science (80-.). 352 (2016).
    • (2016) Science (80-.). , vol.352
    • Marques, S.1
  • 10
    • 84922321862 scopus 로고    scopus 로고
    • Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
    • Pollen, A. A. et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat. Biotechnol. 32, 1053-8 (2014).
    • (2014) Nat. Biotechnol. , vol.32 , pp. 1053-1058
    • Pollen, A.A.1
  • 11
    • 84895069488 scopus 로고    scopus 로고
    • Quantitative single-cell RNA-seq with unique molecular identifiers
    • Islam, S. et al. Quantitative single-cell RNA-seq with unique molecular identifiers. Nat. Methods 11, 163-166 (2013).
    • (2013) Nat. Methods , vol.11 , pp. 163-166
    • Islam, S.1
  • 12
    • 84887101406 scopus 로고    scopus 로고
    • Smart-seq. 2 for sensitive full-length transcriptome profiling in single cells
    • Picelli, S. et al. Smart-seq. 2 for sensitive full-length transcriptome profiling in single cells. Nat. Methods 10, 1096-1098 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 1096-1098
    • Picelli, S.1
  • 13
    • 84893905629 scopus 로고    scopus 로고
    • Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types
    • Jaitin, D. A. et al. Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types. Science (80-.). 343 (2014).
    • (2014) Science (80-.). , vol.343
    • Jaitin, D.A.1
  • 14
    • 84866953427 scopus 로고    scopus 로고
    • CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification
    • Hashimshony, T., Wagner, F., Sher, N. & Yanai, I. CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification. Cell Rep. 2, 666-673 (2012).
    • (2012) Cell Rep. , vol.2 , pp. 666-673
    • Hashimshony, T.1    Wagner, F.2    Sher, N.3    Yanai, I.4
  • 15
    • 84929684999 scopus 로고    scopus 로고
    • Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
    • Macosko, E. Z. et al. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets. Cell 161, 1202-1214 (2015).
    • (2015) Cell , vol.161 , pp. 1202-1214
    • MacOsko, E.Z.1
  • 16
    • 84929684998 scopus 로고    scopus 로고
    • Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
    • Klein, A. M. et al. Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells. Cell 161, 1187-1201 (2015).
    • (2015) Cell , vol.161 , pp. 1187-1201
    • Klein, A.M.1
  • 19
    • 84976276942 scopus 로고    scopus 로고
    • Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
    • Lake, B. B. et al. Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain. Science 352, 1586-90 (2016).
    • (2016) Science , vol.352 , pp. 1586-1590
    • Lake, B.B.1
  • 20
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the adult mouse brain
    • Lein, E. S. et al. Genome-wide atlas of gene expression in the adult mouse brain. Nature 445, 168-176 (2007).
    • (2007) Nature , vol.445 , pp. 168-176
    • Lein, E.S.1
  • 21
    • 84866518216 scopus 로고    scopus 로고
    • An anatomically comprehensive atlas of the adult human brain transcriptome
    • Hawrylycz, M. J. et al. An anatomically comprehensive atlas of the adult human brain transcriptome. Nature 489, 391-399 (2012).
    • (2012) Nature , vol.489 , pp. 391-399
    • Hawrylycz, M.J.1
  • 22
    • 85031046570 scopus 로고    scopus 로고
    • Massively parallel single-nucleus RNA-seq with DroNc-seq
    • Habib, N. et al. Massively parallel single-nucleus RNA-seq with DroNc-seq. Nat. Methods https://doi.org/10.1038/nmeth.4407 (2017).
    • (2017) Nat. Methods
    • Habib, N.1
  • 23
    • 85012271992 scopus 로고    scopus 로고
    • Seq-Well: Portable, low-cost RNA sequencing of single cells at high throughput
    • Gierahn, T. M. et al. Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput. Nat. Methods https://doi.org/10.1038/nmeth.4179 (2017).
    • (2017) Nat. Methods
    • Gierahn, T.M.1
  • 24
    • 84922311090 scopus 로고    scopus 로고
    • Combinatorial labeling of single cells for gene expression cytometry
    • Fan, H. C., Fu, G. K. & Fodor, S. P. A. Combinatorial labeling of single cells for gene expression cytometry. Science (80-.). 347, 1258367-1258367 (2015).
    • (2015) Science (80-.). , vol.347 , pp. 1258367
    • Fan, H.C.1    Fu, G.K.2    Fodor, S.P.A.3
  • 25
    • 84937857359 scopus 로고    scopus 로고
    • Single-cell chromatin accessibility reveals principles of regulatory variation
    • Buenrostro, J. D. et al. Single-cell chromatin accessibility reveals principles of regulatory variation. Nature 523, 486-490 (2015).
    • (2015) Nature , vol.523 , pp. 486-490
    • Buenrostro, J.D.1
  • 26
    • 84885617426 scopus 로고    scopus 로고
    • Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
    • Nagano, T. et al. Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. Nature 502, 59-64 (2013).
    • (2013) Nature , vol.502 , pp. 59-64
    • Nagano, T.1
  • 27
    • 84912101598 scopus 로고    scopus 로고
    • CRISPR-Cas9 knockin mice for genome editing and cancer modeling
    • Platt, R. J. et al. CRISPR-Cas9 knockin mice for genome editing and cancer modeling. Cell 159, 440-55 (2014).
    • (2014) Cell , vol.159 , pp. 440-455
    • Platt, R.J.1
  • 28
    • 84901849749 scopus 로고    scopus 로고
    • 3D mouse embryonic stem cell culture for generating inner ear organoids
    • Koehler, K. R. & Hashino, E. 3D mouse embryonic stem cell culture for generating inner ear organoids. Nat. Protoc. 9, 1229-1244 (2014).
    • (2014) Nat. Protoc. , vol.9 , pp. 1229-1244
    • Koehler, K.R.1    Hashino, E.2
  • 29
    • 84959361379 scopus 로고    scopus 로고
    • Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
    • Krishnaswami, S. R. et al. Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons. Nat. Protoc. 11, 499-524 (2016).
    • (2016) Nat. Protoc. , vol.11 , pp. 499-524
    • Krishnaswami, S.R.1
  • 30
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 31
    • 84875404794 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: Extensions and updates 2013
    • Meyer, L. R. et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 41, D64-9 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D64-D69
    • Meyer, L.R.1
  • 32
    • 79959327151 scopus 로고    scopus 로고
    • Counting individual DNA molecules by the stochastic attachment of diverse labels
    • Fu, G. K., Hu, J., Wang, P.-H. & Fodor, S. P. A. Counting individual DNA molecules by the stochastic attachment of diverse labels. Proc. Natl. Acad. Sci. USA 108, 9026-31 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 9026-9031
    • Fu, G.K.1    Hu, J.2    Wang, P.-H.3    Fodor, S.P.A.4
  • 33
    • 57249084011 scopus 로고    scopus 로고
    • Visualizing Data using t-SNE
    • Maaten, Lvander & Hinton, G. Visualizing Data using t-SNE. J. Mach. Learn. Res. 9, 2579-2605 (2008).
    • (2008) J. Mach. Learn. Res. , vol.9 , pp. 2579-2605
    • Maaten, L.1    Hinton, G.2
  • 34
    • 84946100079 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: 2015 update
    • Rosenbloom, K. R. et al. The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. 43, D670-81 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D670-D681
    • Rosenbloom, K.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.