메뉴 건너뛰기




Volumn 18, Issue 1, 2017, Pages

The interplay of demography and selection during maize domestication and expansion

Author keywords

Demography; Domestication; Genetic load; Maize

Indexed keywords

ALLELE; CASE REPORT; DEMOGRAPHY; DOMESTICATION; EFFECTIVE POPULATION SIZE; FEMALE; FOUNDER EFFECT; GENETIC LOAD; GENOME; GUATEMALA; HUMAN; INTROGRESSION; LANDRACE; LANDSCAPE; MAIZE; MALE; MEXICO; NONHUMAN; POPULATION GROWTH; PREVALENCE; RIVER; TEOSINTE; GENETIC SELECTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; INBREEDING; MUTATION; POPULATION DENSITY;

EID: 85033791973     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-017-1346-4     Document Type: Article
Times cited : (151)

References (93)
  • 1
  • 3
    • 33845618112 scopus 로고    scopus 로고
    • The molecular genetics of crop domestication
    • Doebley JF, Gaut BS, Smith BD. The molecular genetics of crop domestication. Cell. 2006; 127:1309-21.
    • (2006) Cell , vol.127 , pp. 1309-1321
    • Doebley, J.F.1    Gaut, B.S.2    Smith, B.D.3
  • 4
    • 79955049280 scopus 로고    scopus 로고
    • Rapid, global demographic expansions after the origins of agriculture
    • Gignoux CR, Henn BM, Mountain JL. Rapid, global demographic expansions after the origins of agriculture. Proc Natl Acad Sci. 2011; 108:6044-9.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 6044-6049
    • Gignoux, C.R.1    Henn, B.M.2    Mountain, J.L.3
  • 7
    • 84895867277 scopus 로고    scopus 로고
    • The deleterious mutation load is insensitive to recent population history
    • Simons YB, Turchin MC, Pritchard JK, Sella G. The deleterious mutation load is insensitive to recent population history. Nat Genet. 2014; 46:220-4.
    • (2014) Nat Genet , vol.46 , pp. 220-224
    • Simons, Y.B.1    Turchin, M.C.2    Pritchard, J.K.3    Sella, G.4
  • 8
    • 84926169268 scopus 로고    scopus 로고
    • No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans
    • Do R, Balick D, Li H, Adzhubei I, Sunyaev S, Reich D. No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans. Nat Genet. 2015; 47:126-31.
    • (2015) Nat Genet , vol.47 , pp. 126-131
    • Do, R.1    Balick, D.2    Li, H.3    Adzhubei, I.4    Sunyaev, S.5    Reich, D.6
  • 9
    • 84979937476 scopus 로고    scopus 로고
    • The genetic cost of Neanderthal introgression
    • Harris K, Nielsen R. The genetic cost of Neanderthal introgression. Genetics. 2016; 203:881-91.
    • (2016) Genetics , vol.203 , pp. 881-891
    • Harris, K.1    Nielsen, R.2
  • 10
    • 84921818763 scopus 로고    scopus 로고
    • Characteristics of neutral and deleterious protein-coding variation among individuals and populations
    • Fu W, Gittelman RM, Bamshad MJ, Akey JM. Characteristics of neutral and deleterious protein-coding variation among individuals and populations. Am J Human Genet. 2014; 95:421-36.
    • (2014) Am J Human Genet , vol.95 , pp. 421-436
    • Fu, W.1    Gittelman, R.M.2    Bamshad, M.J.3    Akey, J.M.4
  • 11
    • 84994530600 scopus 로고    scopus 로고
    • Recombination rate variation, hitchhiking, and demographic history shape deleterious load in poplar
    • Zhang M, Zhou L, Bawa R, Suren H, Holliday J. Recombination rate variation, hitchhiking, and demographic history shape deleterious load in poplar. Mol Biol Evol. 2016; 33:2899-910.
    • (2016) Mol Biol Evol , vol.33 , pp. 2899-2910
    • Zhang, M.1    Zhou, L.2    Bawa, R.3    Suren, H.4    Holliday, J.5
  • 13
    • 84991489224 scopus 로고    scopus 로고
    • The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives
    • Simons YB, Sella G. The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives. Curr Opin Genet Dev. 2016; 41:150-8.
    • (2016) Curr Opin Genet Dev , vol.41 , pp. 150-158
    • Simons, Y.B.1    Sella, G.2
  • 14
    • 85018981361 scopus 로고    scopus 로고
    • Deleterious variants in Asian rice and the potential cost of domestication
    • Liu Q, Zhou Y, Morrell PL, Gaut BS. Deleterious variants in Asian rice and the potential cost of domestication. Mol Biol Evol. 2017; 34:908-924.
    • (2017) Mol Biol Evol , vol.34 , pp. 908-924
    • Liu, Q.1    Zhou, Y.2    Morrell, P.L.3    Gaut, B.S.4
  • 15
    • 84860565554 scopus 로고    scopus 로고
    • Serial founder effects during range expansion: a spatial analog of genetic drift
    • Slatkin M, Excoffier L. Serial founder effects during range expansion: a spatial analog of genetic drift. Genetics. 2012; 191:171-81.
    • (2012) Genetics , vol.191 , pp. 171-181
    • Slatkin, M.1    Excoffier, L.2
  • 16
    • 0030905490 scopus 로고    scopus 로고
    • Evolution of coalescence times, genetic diversity and structure during colonization
    • Austerlitz F, Jung-Muller B, Godelle B, Gouyon PH. Evolution of coalescence times, genetic diversity and structure during colonization. Theor Popul Biol. 1997; 51:148-64.
    • (1997) Theor Popul Biol , vol.51 , pp. 148-164
    • Austerlitz, F.1    Jung-Muller, B.2    Godelle, B.3    Gouyon, P.H.4
  • 19
    • 85000609402 scopus 로고    scopus 로고
    • The strength of selection against Neanderthal introgression
    • Juric I, Aeschbacher S, Coop G. The strength of selection against Neanderthal introgression. PLoS Genet. 2016; 12:1-25.
    • (2016) PLoS Genet , vol.12 , pp. 1-25
    • Juric, I.1    Aeschbacher, S.2    Coop, G.3
  • 21
    • 65249122602 scopus 로고    scopus 로고
    • Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley
    • Piperno DR, Ranere AJ, Holst I, Iriarte J, Dickau R. Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley. Mexico. Proc Natl Acad Sci. 2009; 106:5019-24.
    • (2009) Mexico. Proc Natl Acad Sci , vol.106 , pp. 5019-5024
    • Piperno, D.R.1    Ranere, A.J.2    Holst, I.3    Iriarte, J.4    Dickau, R.5
  • 27
    • 67650314824 scopus 로고    scopus 로고
    • Historical divergence and gene flow in the genus Zea
    • Ross-Ibarra J, Tenaillon M, Gaut BS. Historical divergence and gene flow in the genus Zea. Genetics. 2009; 181:1399-413.
    • (2009) Genetics , vol.181 , pp. 1399-1413
    • Ross-Ibarra, J.1    Tenaillon, M.2    Gaut, B.S.3
  • 28
    • 3042595170 scopus 로고    scopus 로고
    • Selection versus demography: a multilocus investigation of the domestication process in maize
    • Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS. Selection versus demography: a multilocus investigation of the domestication process in maize. Mol Biol Evol. 2004; 21:1214-25.
    • (2004) Mol Biol Evol , vol.21 , pp. 1214-1225
    • Tenaillon, M.I.1    U'Ren, J.2    Tenaillon, O.3    Gaut, B.S.4
  • 29
    • 77957777630 scopus 로고    scopus 로고
    • A geospatial modelling approach integrating archaeobotany and genetics to trace the origin and dispersal of domesticated plants
    • e12060
    • Van Etten J, Hijmans RJ. A geospatial modelling approach integrating archaeobotany and genetics to trace the origin and dispersal of domesticated plants. PLoS One. 2010; e12060:5.
    • (2010) PLoS One , pp. 5
    • Van Etten, J.1    Hijmans, R.J.2
  • 30
    • 85033800385 scopus 로고    scopus 로고
    • Accessed 15 Apr
    • Races of maize. Available from: https://www.ars.usda.gov/midwest-area/ames/plant-introduction-research/docs/races-of-maize/. Accessed 15 Apr 2015.
    • (2015)
  • 31
    • 84905572361 scopus 로고    scopus 로고
    • Inferring human population size and separation history from multiple genome sequences
    • Schiffels S, Durbin R. Inferring human population size and separation history from multiple genome sequences. Nat Genet. 2014; 46:919-25.
    • (2014) Nat Genet , vol.46 , pp. 919-925
    • Schiffels, S.1    Durbin, R.2
  • 32
    • 84994884935 scopus 로고    scopus 로고
    • Effects of linked selective sweeps on demographic inference and model selection
    • Schrider DR, Shanku AG, Kern AD. Effects of linked selective sweeps on demographic inference and model selection. Genetics. 2016; 204:1207-23.
    • (2016) Genetics , vol.204 , pp. 1207-1223
    • Schrider, D.R.1    Shanku, A.G.2    Kern, A.D.3
  • 33
    • 85033784639 scopus 로고    scopus 로고
    • Unimputed GBS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel
    • Hearne S, Chen C, Buckler E, Mitchell S. Unimputed GBS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel. CIMMYT. 2014. http://data.cimmyt.org/dvn/dv/seedsofdiscoverydvn/faces/study/StudyPage.xhtml?studyId=21%24tab=files.
    • (2014) CIMMYT.
    • Hearne, S.1    Chen, C.2    Buckler, E.3    Mitchell, S.4
  • 34
    • 84878619258 scopus 로고    scopus 로고
    • Identity by descent: variation in meiosis, across genomes, and in populations
    • Thompson EA. Identity by descent: variation in meiosis, across genomes, and in populations. Genetics. 2013; 194(2):301-26.
    • (2013) Genetics , vol.194 , Issue.2 , pp. 301-326
    • Thompson, E.A.1
  • 35
    • 79961039058 scopus 로고    scopus 로고
    • Testing for ancient admixture between closely related populations
    • Durand EY, Patterson N, Reich D, Slatkin M. Testing for ancient admixture between closely related populations. Mol Biol Evol. 2011; 28:2239-52.
    • (2011) Mol Biol Evol , vol.28 , pp. 2239-2252
    • Durand, E.Y.1    Patterson, N.2    Reich, D.3    Slatkin, M.4
  • 37
    • 84922375154 scopus 로고    scopus 로고
    • Evaluating the use of ABBA-BABA statistics to locate introgressed loci
    • Martin SH, Davey JW, Jiggins CD. Evaluating the use of ABBA-BABA statistics to locate introgressed loci. Mol Biol Evol. 2015; 32:244-57.
    • (2015) Mol Biol Evol , vol.32 , pp. 244-257
    • Martin, S.H.1    Davey, J.W.2    Jiggins, C.D.3
  • 38
    • 85011650258 scopus 로고    scopus 로고
    • A study of allelic diversity underlying flowering-time adaptation in maize landraces
    • Navarro JAR, Willcox M, Burgueño J, Romay C, Swarts K, Trachsel S, et al.A study of allelic diversity underlying flowering-time adaptation in maize landraces. Nat Genet. 2017; 49:476-80.
    • (2017) Nat Genet , vol.49 , pp. 476-480
    • Navarro, J.A.R.1    Willcox, M.2    Burgueño, J.3    Romay, C.4    Swarts, K.5    Trachsel, S.6
  • 41
    • 84949461386 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations as a consequence of domestication and improvement in sunflowers and other Compositae crops
    • Renaut S, Rieseberg LH. The accumulation of deleterious mutations as a consequence of domestication and improvement in sunflowers and other Compositae crops. Mol Biol Evol. 2015; 32:2273-83.
    • (2015) Mol Biol Evol , vol.32 , pp. 2273-2283
    • Renaut, S.1    Rieseberg, L.H.2
  • 42
    • 77955504857 scopus 로고    scopus 로고
    • Deleterious amino acid polymorphisms in Arabidopsis thaliana and rice
    • Günther T, Schmid KJ. Deleterious amino acid polymorphisms in Arabidopsis thaliana and rice. Theor Appl Genet. 2010; 121:157-68.
    • (2010) Theor Appl Genet , vol.121 , pp. 157-168
    • Günther, T.1    Schmid, K.J.2
  • 44
    • 33847661877 scopus 로고    scopus 로고
    • Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice
    • Zhu Q, Zheng X, Luo J, Gaut BS, Ge S. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Mol Biol Evol. 2007; 24:875-88.
    • (2007) Mol Biol Evol , vol.24 , pp. 875-888
    • Zhu, Q.1    Zheng, X.2    Luo, J.3    Gaut, B.S.4    Ge, S.5
  • 45
    • 78649479141 scopus 로고    scopus 로고
    • Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
    • Lam HM, Xu X, Liu X, Chen W, Yang G, Wong FL, et al.Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet. 2010; 42:1053-9.
    • (2010) Nat Genet , vol.42 , pp. 1053-1059
    • Lam, H.M.1    Xu, X.2    Liu, X.3    Chen, W.4    Yang, G.5    Wong, F.L.6
  • 46
    • 85032653251 scopus 로고    scopus 로고
    • Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication
    • Zhou Y, Massonnet M, Sanjak J, Cantu D, Gaut BS. Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication. Proc Natl Acad Sci. 2017; 114:11715-11720. doi: 10.1073/pnas.1709257114.
    • (2017) Proc Natl Acad Sci , vol.114 , pp. 11715-11720
    • Zhou, Y.1    Massonnet, M.2    Sanjak, J.3    Cantu, D.4    Gaut, B.S.5
  • 47
    • 84981287712 scopus 로고    scopus 로고
    • Domestication history and geographical adaptation inferred from a SNP map of African rice
    • Meyer RS, Choi JY, Sanches M, Plessis A, Flowers JM, Amas J, et al.Domestication history and geographical adaptation inferred from a SNP map of African rice. Nat Genet. 2016; 48:1083-8.
    • (2016) Nat Genet , vol.48 , pp. 1083-1088
    • Meyer, R.S.1    Choi, J.Y.2    Sanches, M.3    Plessis, A.4    Flowers, J.M.5    Amas, J.6
  • 48
    • 84951568548 scopus 로고    scopus 로고
    • Genomics and the contrasting dynamics of annual and perennial domestication
    • Gaut BS, Díez CM, Morrell PL. Genomics and the contrasting dynamics of annual and perennial domestication. Trends Genet. 2015; 31:709-19.
    • (2015) Trends Genet , vol.31 , pp. 709-719
    • Gaut, B.S.1    Díez, C.M.2    Morrell, P.L.3
  • 50
    • 61649119281 scopus 로고    scopus 로고
    • Statistical inferences in phylogeography
    • Nielsen R, Beaumont MA. Statistical inferences in phylogeography. Mol Ecol. 2009; 18:1034-47.
    • (2009) Mol Ecol , vol.18 , pp. 1034-1047
    • Nielsen, R.1    Beaumont, M.A.2
  • 51
    • 84960388143 scopus 로고    scopus 로고
    • On the importance of being structured: instantaneous coalescence rates and human evolution-lessons for ancestral population size inference?
    • Mazet O, Rodriguez W, Grusea S, Boitard S, Chikhi L. On the importance of being structured: instantaneous coalescence rates and human evolution-lessons for ancestral population size inference?Heredity. 2016; 116:362.
    • (2016) Heredity , vol.116 , pp. 362
    • Mazet, O.1    Rodriguez, W.2    Grusea, S.3    Boitard, S.4    Chikhi, L.5
  • 52
    • 0025599681 scopus 로고
    • Some population genetic consequences of colony formation and extinction: genetic correlations within founding groups
    • Whitlock MC, McCauley DE. Some population genetic consequences of colony formation and extinction: genetic correlations within founding groups. Evolution. 1990; 44(7):1717-24.
    • (1990) Evolution , vol.44 , Issue.7 , pp. 1717-1724
    • Whitlock, M.C.1    McCauley, D.E.2
  • 53
    • 53249125848 scopus 로고    scopus 로고
    • Population structure and genetic diversity of New World maize races assessed by DNA microsatellites
    • Vigouroux Y, Glaubitz JC, Matsuoka Y, Goodman MM, Sánchez J, Doebley J. Population structure and genetic diversity of New World maize races assessed by DNA microsatellites. Am J Bot. 2008; 95:1240-53.
    • (2008) Am J Bot , vol.95 , pp. 1240-1253
    • Vigouroux, Y.1    Glaubitz, J.C.2    Matsuoka, Y.3    Goodman, M.M.4    Sánchez, J.5    Doebley, J.6
  • 55
    • 79951812725 scopus 로고    scopus 로고
    • Plant domestication and the shift to agriculture in the Andes In: Silverman H, Isbell WH, editors
    • New York: Springer
    • Pearsall, DM. Plant domestication and the shift to agriculture in the Andes In: Silverman H, Isbell WH, editors. The handbook of South American archaeology. New York: Springer: 2008. p. 105-20.
    • (2008) The handbook of South American archaeology. , pp. 105-120
    • Pearsall, D.M.1
  • 56
    • 67650314824 scopus 로고    scopus 로고
    • Historical divergence and gene flow in the genus Zea
    • Ross-Ibarra J, Tenaillon M, Gaut BS. Historical divergence and gene flow in the genus Zea. Genetics. 2009; 181:1399-413.
    • (2009) Genetics , vol.181 , pp. 1399-1413
    • Ross-Ibarra, J.1    Tenaillon, M.2    Gaut, B.S.3
  • 57
    • 34547509667 scopus 로고    scopus 로고
    • Late Pleistocene and Holocene environmental history of the Iguala valley, central Balsas watershed of Mexico
    • Piperno DR, Moreno JE, Iriarte J, Holst I, Lachniet M, Jones JG, et al.Late Pleistocene and Holocene environmental history of the Iguala valley, central Balsas watershed of Mexico. Proc Natl Acad Sci. 2007; 104:11874-81.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 11874-11881
    • Piperno, D.R.1    Moreno, J.E.2    Iriarte, J.3    Holst, I.4    Lachniet, M.5    Jones, J.G.6
  • 58
    • 84863565828 scopus 로고    scopus 로고
    • Vegetation in western Central Mexico during the last 50000 years: modern analogs and climate in the Zacapu Basin
    • Correa-Metrio A, Lozano-García S, Xelhuantzi-López S, Sosa-Nájera S, Metcalfe SE. Vegetation in western Central Mexico during the last 50000 years: modern analogs and climate in the Zacapu Basin. J Quat Sci. 2012; 27:509-18.
    • (2012) J Quat Sci , vol.27 , pp. 509-518
    • Correa-Metrio, A.1    Lozano-García, S.2    Xelhuantzi-López, S.3    Sosa-Nájera, S.4    Metcalfe, S.E.5
  • 59
    • 84939479724 scopus 로고    scopus 로고
    • Barley landraces are characterized by geographically heterogeneous genomic origins
    • Poets AM, Fang Z, Clegg MT, Morrell PL. Barley landraces are characterized by geographically heterogeneous genomic origins. Genome Biol. 2015; 16:1.
    • (2015) Genome Biol , vol.16 , pp. 1
    • Poets, A.M.1    Fang, Z.2    Clegg, M.T.3    Morrell, P.L.4
  • 60
    • 84971246231 scopus 로고    scopus 로고
    • Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
    • Bredeson JV, Lyons JB, Prochnik SE, Wu GA, Ha CM, Edsinger-Gonzales E, et al.Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Nat Biotechnol. 2016; 34:562-70.
    • (2016) Nat Biotechnol , vol.34 , pp. 562-570
    • Bredeson, J.V.1    Lyons, J.B.2    Prochnik, S.E.3    Wu, G.A.4    Ha, C.M.5    Edsinger-Gonzales, E.6
  • 61
    • 85019838276 scopus 로고    scopus 로고
    • Genomic analysis reveals hypoxia adaptation in the Tibetan Mastiff by introgression of the grey wolf from the Tibetan Plateau
    • Miao B, Wang Z, Li Y. Genomic analysis reveals hypoxia adaptation in the Tibetan Mastiff by introgression of the grey wolf from the Tibetan Plateau. Mol Biol Evol. 2016; 34:734-43.
    • (2016) Mol Biol Evol , vol.34 , pp. 734-743
    • Miao, B.1    Wang, Z.2    Li, Y.3
  • 62
    • 0000676494 scopus 로고
    • Patterns of isozyme variation between maize and Mexican annual teosinte
    • Doebley J, Goodman MM, Stuber CW. Patterns of isozyme variation between maize and Mexican annual teosinte. Econ Bot. 1987; 41(2):234-46.
    • (1987) Econ Bot , vol.41 , Issue.2 , pp. 234-246
    • Doebley, J.1    Goodman, M.M.2    Stuber, C.W.3
  • 63
    • 85031316293 scopus 로고    scopus 로고
    • Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize
    • Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, et al. Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize. PLoS Genetics. 2017; 13:e1007019.
    • (2017) PLoS Genetics , vol.13
    • Yang, J.1    Mezmouk, S.2    Baumgarten, A.3    Buckler, E.S.4    Guill, K.E.5    McMullen, M.D.6
  • 64
    • 84946944411 scopus 로고    scopus 로고
    • The genomic impacts of drift and selection for hybrid performance in maize
    • Gerke JP, Edwards JW, Guill KE, Ross-Ibarra J, McMullen MD. The genomic impacts of drift and selection for hybrid performance in maize. Genetics. 2015; 201(3):1201-11.
    • (2015) Genetics , vol.201 , Issue.3 , pp. 1201-1211
    • Gerke, J.P.1    Edwards, J.W.2    Guill, K.E.3    Ross-Ibarra, J.4    McMullen, M.D.5
  • 65
    • 33344458581 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication
    • Lu J, Tang T, Tang H, Huang J, Shi S, Wu CI. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. Trends Genet. 2006; 22:126-31.
    • (2006) Trends Genet , vol.22 , pp. 126-131
    • Lu, J.1    Tang, T.2    Tang, H.3    Huang, J.4    Shi, S.5    Wu, C.I.6
  • 67
    • 85017648395 scopus 로고    scopus 로고
    • Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation
    • Ramu P, Esuma W, Kawuki R, Rabbi IY, Egesi C, Bredeson JV, et al.Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation. Nat Genet. 2017; 49:959-63.
    • (2017) Nat Genet , vol.49 , pp. 959-963
    • Ramu, P.1    Esuma, W.2    Kawuki, R.3    Rabbi, I.Y.4    Egesi, C.5    Bredeson, J.V.6
  • 68
    • 85018981361 scopus 로고    scopus 로고
    • Deleterious variants in Asian rice and the potential cost of domestication
    • Liu Q, Zhou Y, Morrell PL, Gaut BS. Deleterious variants in Asian rice and the potential cost of domestication. Mol Biol Evol. 2017; 34:908-24.
    • (2017) Mol Biol Evol , vol.34 , pp. 908-924
    • Liu, Q.1    Zhou, Y.2    Morrell, P.L.3    Gaut, B.S.4
  • 70
    • 79951526578 scopus 로고    scopus 로고
    • Inferences about the distribution of dominance drawn from yeast gene knockout data
    • Agrawal AF, Whitlock MC. Inferences about the distribution of dominance drawn from yeast gene knockout data. Genetics. 2011; 187:553-66.
    • (2011) Genetics , vol.187 , pp. 553-566
    • Agrawal, A.F.1    Whitlock, M.C.2
  • 71
    • 81255211332 scopus 로고    scopus 로고
    • Fitness landscapes: an alternative theory for the dominance of mutation
    • Manna F, Martin G, Lenormand T. Fitness landscapes: an alternative theory for the dominance of mutation. Genetics. 2011; 189:923-37.
    • (2011) Genetics , vol.189 , pp. 923-937
    • Manna, F.1    Martin, G.2    Lenormand, T.3
  • 72
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 1987; 19:11-15.
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1
  • 73
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010; 26:589-95.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 75
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, et al.A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011; 43:491-8.
    • (2011) Nat Genet , vol.43 , pp. 491-498
    • DePristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5    Hartl, C.6
  • 77
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • Browning SR, Browning BL. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet. 2007; 81:1084-97.
    • (2007) Am J Hum Genet , vol.81 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 78
    • 84863007735 scopus 로고    scopus 로고
    • Maize HapMap2 identifies extant variation from a genome in flux
    • Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, et al.Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet. 2012; 44:803-7.
    • (2012) Nat Genet , vol.44 , pp. 803-807
    • Chia, J.M.1    Song, C.2    Bradbury, P.J.3    Costich, D.4    de Leon, N.5
  • 80
    • 84900332666 scopus 로고    scopus 로고
    • ngsTools: methods for population genetics analyses from next-generation sequencing data
    • Fumagalli M, Vieira FG, Linderoth T, Nielsen R. ngsTools: methods for population genetics analyses from next-generation sequencing data. Bioinformatics. 2014; 30:1486-7.
    • (2014) Bioinformatics , vol.30 , pp. 1486-1487
    • Fumagalli, M.1    Vieira, F.G.2    Linderoth, T.3    Nielsen, R.4
  • 82
    • 84887092567 scopus 로고    scopus 로고
    • Estimating individual admixture proportions from next generation sequencing data
    • Skotte L, Korneliussen TS, Albrechtsen A. Estimating individual admixture proportions from next generation sequencing data. Genetics. 2013; 195:693-702.
    • (2013) Genetics , vol.195 , pp. 693-702
    • Skotte, L.1    Korneliussen, T.S.2    Albrechtsen, A.3
  • 83
    • 79951548848 scopus 로고    scopus 로고
    • phangorn: phylogenetic analysis in R
    • Schliep KP. phangorn: phylogenetic analysis in R. Bioinformatics. 2011; 27:592-3.
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.P.1
  • 84
    • 84884735609 scopus 로고    scopus 로고
    • Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data
    • Korneliussen TS, Moltke I, Albrechtsen A, Nielsen R. Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data. BMC Bioinformatics. 2013; 14:289.
    • (2013) BMC Bioinformatics , vol.14 , pp. 289
    • Korneliussen, T.S.1    Moltke, I.2    Albrechtsen, A.3    Nielsen, R.4
  • 85
    • 84887421071 scopus 로고    scopus 로고
    • Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation
    • Vieira FG, Fumagalli M, Albrechtsen A, Nielsen R. Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation. Genome Res. 2013; 23:1852-61.
    • (2013) Genome Res , vol.23 , pp. 1852-1861
    • Vieira, F.G.1    Fumagalli, M.2    Albrechtsen, A.3    Nielsen, R.4
  • 87
    • 84929292025 scopus 로고    scopus 로고
    • Joint-multiple family linkage analysis predicts within-family variation better than single-family analysis of the maize nested association mapping population
    • Ogut F, Bian Y, Bradbury PJ, Holland JB. Joint-multiple family linkage analysis predicts within-family variation better than single-family analysis of the maize nested association mapping population. Heredity. 2015; 114:552-63.
    • (2015) Heredity , vol.114 , pp. 552-563
    • Ogut, F.1    Bian, Y.2    Bradbury, P.J.3    Holland, J.B.4
  • 88
    • 84859499806 scopus 로고    scopus 로고
    • EggLib: processing, analysis and simulation tools for population genetics and genomics
    • De Mita S, Siol M. EggLib: processing, analysis and simulation tools for population genetics and genomics. BMC Genet. 2012; 13:27.
    • (2012) BMC Genet , vol.13 , pp. 27
    • De Mita, S.1    Siol, M.2
  • 91
    • 84959380317 scopus 로고    scopus 로고
    • Construction of the third generation Zea mays haplotype map
    • Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, et al.Construction of the third generation Zea mays haplotype map. bioRxiv. 2015;:026963.
    • (2015) bioRxiv , pp. 26963
    • Bukowski, R.1    Guo, X.2    Lu, Y.3    Zou, C.4    He, B.5    Rong, Z.6
  • 92
    • 85033793701 scopus 로고    scopus 로고
    • The interplay of demography and selection during maize domestication and expansion
    • Accessed 15 Oct 2017
    • Wang L, Beissinger TM, Lorant A, Ross-Ibarra C, Ross-Ibarra J, Hufford M. The interplay of demography and selection during maize domestication and expansion. github. 2017. Available from: https://doi.org/10.5281/zenodo.1013415. Accessed 15 Oct 2017.
    • (2017) github.
    • Wang, L.1    Beissinger, T.M.2    Lorant, A.3    Ross-Ibarra, C.4    Ross-Ibarra, J.5    Hufford, M.6
  • 93
    • 85033789473 scopus 로고    scopus 로고
    • The interplay of demography and selection during maize domestication and expansion
    • BioProject Accession: PRJNA300309; SRP065483. Accessed 15 Oct 2017
    • Wang L, Beissinger TM, Lorant A, Ross-Ibarra C, Ross-Ibarra J, Hufford M. The interplay of demography and selection during maize domestication and expansion. NCBI SRA; 2017. BioProject Accession: PRJNA300309; SRP065483. Available from: https://www.ncbi.nlm.nih.gov/bioproject/300309?log%24=activity. Accessed 15 Oct 2017.
    • (2017) NCBI SRA
    • Wang, L.1    Beissinger, T.M.2    Lorant, A.3    Ross-Ibarra, C.4    Ross-Ibarra, J.5    Hufford, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.