-
1
-
-
84906497659
-
The distribution of deleterious genetic variation in human populations
-
Lohmueller KE (2014) The distribution of deleterious genetic variation in human populations. Curr Opin Genet Dev 29:139-146.
-
(2014)
Curr Opin Genet Dev
, vol.29
, pp. 139-146
-
-
Lohmueller, K.E.1
-
2
-
-
39749139577
-
Proportionally more deleterious genetic variation in European than in African populations
-
Lohmueller KE, et al. (2008) Proportionally more deleterious genetic variation in European than in African populations. Nature 451(7181):994-997.
-
(2008)
Nature
, vol.451
, Issue.7181
, pp. 994-997
-
-
Lohmueller, K.E.1
-
3
-
-
84895867277
-
The deleterious mutation load is insensitive to recent population history
-
Simons YB, Turchin MC, Pritchard JK, Sella G (2014) The deleterious mutation load is insensitive to recent population history. Nat Genet 46(3):220-224.
-
(2014)
Nat Genet
, vol.46
, Issue.3
, pp. 220-224
-
-
Simons, Y.B.1
Turchin, M.C.2
Pritchard, J.K.3
Sella, G.4
-
4
-
-
84926169268
-
No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans
-
Do R, et al. (2015) No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans. Nat Genet 47(2):126-131.
-
(2015)
Nat Genet
, vol.47
, Issue.2
, pp. 126-131
-
-
Do, R.1
-
5
-
-
84921818763
-
Characteristics of neutral and deleterious protein-coding variation among individuals and populations
-
Fu W, Gittelman RM, Bamshad MJ, Akey JM (2014) Characteristics of neutral and deleterious protein-coding variation among individuals and populations. Am J Hum Genet 95(4):421-436.
-
(2014)
Am J Hum Genet
, vol.95
, Issue.4
, pp. 421-436
-
-
Fu, W.1
Gittelman, R.M.2
Bamshad, M.J.3
Akey, J.M.4
-
6
-
-
84929509878
-
Estimating the mutation load in human genomes
-
Henn BM, Botigué LR, Bustamante CD, Clark AG, Gravel S (2015) Estimating the mutation load in human genomes. Nat Rev Genet 16(6):333-343.
-
(2015)
Nat Rev Genet
, vol.16
, Issue.6
, pp. 333-343
-
-
Henn, B.M.1
Botigué, L.R.2
Bustamante, C.D.3
Clark, A.G.4
Gravel, S.5
-
7
-
-
84887109646
-
Population growth inflates the perindividual number of deleterious mutations and reduces their mean effect
-
Gazave E, Chang D, Clark AG, Keinan A (2013) Population growth inflates the perindividual number of deleterious mutations and reduces their mean effect. Genetics 195(3):969-978.
-
(2013)
Genetics
, vol.195
, Issue.3
, pp. 969-978
-
-
Gazave, E.1
Chang, D.2
Clark, A.G.3
Keinan, A.4
-
8
-
-
84890120078
-
On the accumulation of deleterious mutations during range expansions
-
Peischl S, Dupanloup I, Kirkpatrick M, Excoffier L (2013) On the accumulation of deleterious mutations during range expansions. Mol Ecol 22(24):5972-5982.
-
(2013)
Mol Ecol
, vol.22
, Issue.24
, pp. 5972-5982
-
-
Peischl, S.1
Dupanloup, I.2
Kirkpatrick, M.3
Excoffier, L.4
-
9
-
-
84924384865
-
Prehistoric genomes reveal the genetic foundation and cost of horse domestication
-
Schubert M, et al. (2014) Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proc Natl Acad Sci USA 111(52):E5661-E5669.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.52
, pp. E5661-E5669
-
-
Schubert, M.1
-
10
-
-
84893803193
-
Genome sequencing highlights the dynamic early history of dogs
-
Freedman AH, et al. (2014) Genome sequencing highlights the dynamic early history of dogs. PLoS Genet 10(1):e1004016.
-
(2014)
PLoS Genet
, vol.10
, Issue.1
, pp. e1004016
-
-
Freedman, A.H.1
-
11
-
-
79951822946
-
The domestic dog: Man's best friend in the genomic era
-
Boyko AR (2011) The domestic dog: Man's best friend in the genomic era. Genome Biol 12(2):216.
-
(2011)
Genome Biol
, vol.12
, Issue.2
, pp. 216
-
-
Boyko, A.R.1
-
12
-
-
77950856354
-
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication
-
vonHoldt BM, et al. (2010) Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature 464(7290):898-902.
-
(2010)
Nature
, vol.464
, Issue.7290
, pp. 898-902
-
-
VonHoldt, B.M.1
-
13
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh K, et al. (2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438(7069):803-819.
-
(2005)
Nature
, vol.438
, Issue.7069
, pp. 803-819
-
-
Lindblad-Toh, K.1
-
15
-
-
9444233500
-
-
(Howell Book House, New York)
-
American Kennel Club (1997) The Complete Dog Book (Howell Book House, New York).
-
(1997)
The Complete Dog Book
-
-
-
16
-
-
84892721054
-
Genetic recombination is targeted towards gene promoter regions in dogs
-
Auton A, et al. (2013) Genetic recombination is targeted towards gene promoter regions in dogs. PLoS Genet 9(12):e1003984.
-
(2013)
PLoS Genet
, vol.9
, Issue.12
, pp. e1003984
-
-
Auton, A.1
-
17
-
-
84878742437
-
The genomics of selection in dogs and the parallel evolution between dogs and humans
-
Wang GD, et al. (2013) The genomics of selection in dogs and the parallel evolution between dogs and humans. Nat Commun 4:1860.
-
(2013)
Nat Commun
, vol.4
, pp. 1860
-
-
Wang, G.D.1
-
18
-
-
84905457937
-
Hypoxia adaptations in the grey Wolf (Canis lupus chanco) from qinghai-tibet plateau
-
Zhang W, et al. (2014) Hypoxia adaptations in the grey wolf (Canis lupus chanco) from Qinghai-Tibet Plateau. PLoS Genet 10(7):e1004466.
-
(2014)
PLoS Genet
, vol.10
, Issue.7
, pp. e1004466
-
-
Zhang, W.1
-
19
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43(5):491-498.
-
(2011)
Nat Genet
, vol.43
, Issue.5
, pp. 491-498
-
-
DePristo, M.A.1
-
20
-
-
0034924997
-
Positive and negative selection on the human genome
-
Fay JC, Wyckoff GJ, Wu CI (2001) Positive and negative selection on the human genome. Genetics 158(3):1227-1234.
-
(2001)
Genetics
, vol.158
, Issue.3
, pp. 1227-1234
-
-
Fay, J.C.1
Wyckoff, G.J.2
Wu, C.I.3
-
21
-
-
78649310938
-
Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species
-
Elyashiv E, et al. (2010) Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species. Genome Res 20(11):1558-1573.
-
(2010)
Genome Res
, vol.20
, Issue.11
, pp. 1558-1573
-
-
Elyashiv, E.1
-
22
-
-
84866121642
-
Weak selection and protein evolution
-
Akashi H, Osada N, Ohta T (2012) Weak selection and protein evolution. Genetics 192(1):15-31.
-
(2012)
Genetics
, vol.192
, Issue.1
, pp. 15-31
-
-
Akashi, H.1
Osada, N.2
Ohta, T.3
-
23
-
-
54149110152
-
The legacy of domestication: Accumulation of deleterious mutations in the dog genome
-
Cruz F, Vilà C, Webster MT (2008) The legacy of domestication: Accumulation of deleterious mutations in the dog genome. Mol Biol Evol 25(11):2331-2336.
-
(2008)
Mol Biol Evol
, vol.25
, Issue.11
, pp. 2331-2336
-
-
Cruz, F.1
Vilà, C.2
Webster, M.T.3
-
24
-
-
33746731132
-
Relaxation of selective constraint on dog mitochondrial DNA following domestication
-
Björnerfeldt S, Webster MT, Vilà C (2006) Relaxation of selective constraint on dog mitochondrial DNA following domestication. Genome Res 16(8):990-994.
-
(2006)
Genome Res
, vol.16
, Issue.8
, pp. 990-994
-
-
Björnerfeldt, S.1
Webster, M.T.2
Vilà, C.3
-
25
-
-
84946595516
-
Genetic structure in village dogs reveals a central Asian domestication origin
-
Shannon LM, et al. (2015) Genetic structure in village dogs reveals a Central Asian domestication origin. Proc Natl Acad Sci USA 112(44):13639-13644.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.44
, pp. 13639-13644
-
-
Shannon, L.M.1
-
26
-
-
0026286407
-
Conservation genetics of the endangered isle royale gray Wolf
-
Wayne RK, et al. (1991) Conservation genetics of the endangered Isle Royale gray wolf. Conserv Biol 5(1):44-51.
-
(1991)
Conserv Biol
, vol.5
, Issue.1
, pp. 44-51
-
-
Wayne, R.K.1
-
28
-
-
0012088802
-
Population size and rate of evolution
-
Ohta T (1972) Population size and rate of evolution. J Mol Evol 1(3):305-314.
-
(1972)
J Mol Evol
, vol.1
, Issue.3
, pp. 305-314
-
-
Ohta, T.1
-
29
-
-
84940733223
-
Dominance of deleterious alleles controls the response to a population bottleneck
-
Balick DJ, Do R, Cassa CA, Reich D, Sunyaev SR (2015) Dominance of deleterious alleles controls the response to a population bottleneck. PLoS Genet 11(8):e1005436.
-
(2015)
PLoS Genet
, vol.11
, Issue.8
, pp. e1005436
-
-
Balick, D.J.1
Do, R.2
Cassa, C.A.3
Reich, D.4
Sunyaev, S.R.5
-
30
-
-
77956800100
-
A simple genetic architecture underlies morphological variation in dogs
-
Boyko AR, et al. (2010) A simple genetic architecture underlies morphological variation in dogs. PLoS Biol 8(8):e1000451.
-
(2010)
PLoS Biol
, vol.8
, Issue.8
, pp. e1000451
-
-
Boyko, A.R.1
-
31
-
-
0347020396
-
Some practical solutions to welfare problems in dog breeding
-
McGreevy PD, Nicholas FW (1999) Some practical solutions to welfare problems in dog breeding. Anim Welf 8(4):329-341.
-
(1999)
Anim Welf
, vol.8
, Issue.4
, pp. 329-341
-
-
McGreevy, P.D.1
Nicholas, F.W.2
-
32
-
-
84890417804
-
The genetical structure of populations
-
Wright S (1951) The genetical structure of populations. Ann Eugen 15(4):323-354.
-
(1951)
Ann Eugen
, vol.15
, Issue.4
, pp. 323-354
-
-
Wright, S.1
-
33
-
-
78651237647
-
Identifying a high fraction of the human genome to be under selective constraint using GERP++
-
Davydov EV, et al. (2010) Identifying a high fraction of the human genome to be under selective constraint using GERP++. PLOS Comput Biol 6(12):e1001025.
-
(2010)
PLOS Comput Biol
, vol.6
, Issue.12
, pp. e1001025
-
-
Davydov, E.V.1
-
34
-
-
0018415510
-
Two types of amino acid substitutions in protein evolution
-
Miyata T, Miyazawa S, Yasunaga T (1979) Two types of amino acid substitutions in protein evolution. J Mol Evol 12(3):219-236.
-
(1979)
J Mol Evol
, vol.12
, Issue.3
, pp. 219-236
-
-
Miyata, T.1
Miyazawa, S.2
Yasunaga, T.3
-
35
-
-
84867127555
-
So many doggone traits: Mapping genetics of multiple phenotypes in the domestic dog
-
Rimbault M, Ostrander EA (2012) So many doggone traits: Mapping genetics of multiple phenotypes in the domestic dog. Hum Mol Genet 21(R1):R52-R57.
-
(2012)
Hum Mol Genet
, vol.21
, Issue.R1
, pp. R52-R57
-
-
Rimbault, M.1
Ostrander, E.A.2
-
36
-
-
84857258123
-
Evolutionary genomics of dog domestication
-
Wayne RK, vonHoldt BM (2012) Evolutionary genomics of dog domestication. Mamm Genome 23(1-2):3-18.
-
(2012)
Mamm Genome
, vol.23
, Issue.1-2
, pp. 3-18
-
-
Wayne, R.K.1
VonHoldt, B.M.2
-
39
-
-
80052310539
-
Evidence for hitchhiking of deleterious mutations within the human genome
-
Chun S, Fay JC (2011) Evidence for hitchhiking of deleterious mutations within the human genome. PLoS Genet 7(8):e1002240.
-
(2011)
PLoS Genet
, vol.7
, Issue.8
, pp. e1002240
-
-
Chun, S.1
Fay, J.C.2
-
40
-
-
80052264437
-
Recombination and hitchhiking of deleterious alleles
-
Hartfield M, Otto SP (2011) Recombination and hitchhiking of deleterious alleles. Evolution 65(9):2421-2434.
-
(2011)
Evolution
, vol.65
, Issue.9
, pp. 2421-2434
-
-
Hartfield, M.1
Otto, S.P.2
-
41
-
-
33344458581
-
The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication
-
Lu J, et al. (2006) The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication. Trends Genet 22(3):126-131.
-
(2006)
Trends Genet
, vol.22
, Issue.3
, pp. 126-131
-
-
Lu, J.1
-
42
-
-
84875301605
-
The genomic signature of dog domestication reveals adaptation to a starch-rich diet
-
Axelsson E, et al. (2013) The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature 495(7441):360-364.
-
(2013)
Nature
, vol.495
, Issue.7441
, pp. 360-364
-
-
Axelsson, E.1
-
43
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R (2005) Molecular signatures of natural selection. Annu Rev Genet 39(1):197-218.
-
(2005)
Annu Rev Genet
, vol.39
, Issue.1
, pp. 197-218
-
-
Nielsen, R.1
-
44
-
-
80055088614
-
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping
-
Vaysse A, et al.; LUPA Consortium (2011) Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. PLoS Genet 7(10):e1002316.
-
(2011)
PLoS Genet
, vol.7
, Issue.10
, pp. e1002316
-
-
Vaysse, A.1
-
45
-
-
75749154475
-
Tracking footprints of artificial selection in the dog genome
-
Akey JM, et al. (2010) Tracking footprints of artificial selection in the dog genome. Proc Natl Acad Sci USA 107(3):1160-1165.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.3
, pp. 1160-1165
-
-
Akey, J.M.1
-
46
-
-
49949086849
-
Leader of the pack: Gene mapping in dogs and other model organisms
-
Karlsson EK, Lindblad-Toh K (2008) Leader of the pack: Gene mapping in dogs and other model organisms. Nat Rev Genet 9(9):713-725.
-
(2008)
Nat Rev Genet
, vol.9
, Issue.9
, pp. 713-725
-
-
Karlsson, E.K.1
Lindblad-Toh, K.2
-
47
-
-
84865040931
-
Franklin H. Epstein lecture. Both ends of the leash-The human links to good dogs with bad genes
-
Ostrander EA (2012) Franklin H. Epstein Lecture. Both ends of the leash-the human links to good dogs with bad genes. N Engl J Med 367(7):636-646.
-
(2012)
N Engl J Med
, vol.367
, Issue.7
, pp. 636-646
-
-
Ostrander, E.A.1
-
48
-
-
84876006245
-
A copy number variant at the KITLG locus likely confers risk for canine squamous cell carcinoma of the digit
-
Karyadi DM, et al. (2013) A copy number variant at the KITLG locus likely confers risk for canine squamous cell carcinoma of the digit. PLoS Genet 9(3):e1003409.
-
(2013)
PLoS Genet
, vol.9
, Issue.3
, pp. e1003409
-
-
Karyadi, D.M.1
-
49
-
-
77949587649
-
Fast and accurate long-read alignment with burrows-wheeler transform
-
Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26(5):589-595.
-
(2010)
Bioinformatics
, vol.26
, Issue.5
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
50
-
-
54149110986
-
Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects
-
Lynch M (2008) Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects. Mol Biol Evol 25(11):2409-2419.
-
(2008)
Mol Biol Evol
, vol.25
, Issue.11
, pp. 2409-2419
-
-
Lynch, M.1
-
51
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell S, et al. (2007) PLINK: A tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81(3):559-575.
-
(2007)
Am J Hum Genet
, vol.81
, Issue.3
, pp. 559-575
-
-
Purcell, S.1
-
52
-
-
0026460082
-
Population genetics of polymorphism and divergence
-
Sawyer SA, Hartl DL (1992) Population genetics of polymorphism and divergence. Genetics 132(4):1161-1176.
-
(1992)
Genetics
, vol.132
, Issue.4
, pp. 1161-1176
-
-
Sawyer, S.A.1
Hartl, D.L.2
-
53
-
-
84901608835
-
The impact of population demography and selection on the genetic architecture of complex traits
-
Lohmueller KE (2014) The impact of population demography and selection on the genetic architecture of complex traits. PLoS Genet 10(5):e1004379.
-
(2014)
PLoS Genet
, vol.10
, Issue.5
, pp. e1004379
-
-
Lohmueller, K.E.1
-
54
-
-
84892714881
-
Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents
-
Halligan DL, et al. (2013) Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents. PLoS Genet 9(12):e1003995.
-
(2013)
PLoS Genet
, vol.9
, Issue.12
, pp. e1003995
-
-
Halligan, D.L.1
-
55
-
-
44949129000
-
Assessing the evolutionary impact of amino acid mutations in the human genome
-
Boyko AR, et al. (2008) Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS Genet 4(5):e1000083.
-
(2008)
PLoS Genet
, vol.4
, Issue.5
, pp. e1000083
-
-
Boyko, A.R.1
|