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Volumn 34, Issue 4, 2017, Pages 908-924

Deleterious variants in Asian Rice and the potential cost of domestication

Author keywords

Bottleneck; Domestication; Selective sweep; SNPs

Indexed keywords

ALLELE; CONTROLLED STUDY; DOMESTICATION; GENOME; HUMAN; HUMAN EXPERIMENT; MATING SYSTEM; NONHUMAN; OUTCROSSING; RICE; SELECTIVE SWEEP; SELFING; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; WILD TYPE; CROP; EVOLUTION; GENETIC VARIATION; GENETICS; MOLECULAR EVOLUTION; MUTATION RATE; ORYZA; PHYLOGENY; PLANT BREEDING; PLANT GENOME; POPULATION GENETICS; PROCEDURES;

EID: 85018981361     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msw296     Document Type: Article
Times cited : (73)

References (92)
  • 1
    • 65149103048 scopus 로고    scopus 로고
    • Constructing genomic maps of positive selection in humans: Where do we go from here?
    • Akey JM. 2009. Constructing genomic maps of positive selection in humans: where do we go from here?. Genome Res. 19:711-722.
    • (2009) Genome Res. , vol.19 , pp. 711-722
    • Akey, J.M.1
  • 3
    • 0033389054 scopus 로고    scopus 로고
    • History of plant population genetics
    • Allard RW. 1999. History of plant population genetics. Annu Rev Genet. 33:1-27.
    • (1999) Annu Rev Genet. , vol.33 , pp. 1-27
    • Allard, R.W.1
  • 4
    • 84924986245 scopus 로고    scopus 로고
    • The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations
    • Arunkumar R, Ness RW, Wright SI, Barrett SC. 2015. The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations. Genetics 199:817-829.
    • (2015) Genetics , vol.199 , pp. 817-829
    • Arunkumar, R.1    Ness, R.W.2    Wright, S.I.3    Barrett, S.C.4
  • 5
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in drosophila mela-nogaster
    • Begun DJ, Aquadro CF. 1992. Levels of naturally occurring DNA polymorphism correlate with recombination rates in Drosophila mela-nogaster. Nature 356:519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 6
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for illumina sequence data
    • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 7
    • 84962622856 scopus 로고    scopus 로고
    • The limits of natural selection in a non-equilibrium world
    • Brandvain Y, Wright SI. 2016. The limits of natural selection in a non-equilibrium world. Trends Genet. 32:201-210.
    • (2016) Trends Genet. , vol.32 , pp. 201-210
    • Brandvain, Y.1    Wright, S.I.2
  • 9
    • 84897900382 scopus 로고    scopus 로고
    • The relation between recombination rate and patterns of molecular evolution and variation in drosophila melanogaster
    • Campos JL, Halligan DL, Haddrill PR, Charlesworth B. 2014. The relation between recombination rate and patterns of molecular evolution and variation in Drosophila melanogaster. Mol Biol Evol. 31:1010-1028.
    • (2014) Mol Biol Evol. , vol.31 , pp. 1010-1028
    • Campos, J.L.1    Halligan, D.L.2    Haddrill, P.R.3    Charlesworth, B.4
  • 11
    • 0028222304 scopus 로고
    • The effect of background selection against deleterious mutations on weakly selected, linked variants
    • Charlesworth B. 1994. The effect of background selection against deleterious mutations on weakly selected, linked variants. Genet Res. 63:213-227.
    • (1994) Genet Res. , vol.63 , pp. 213-227
    • Charlesworth, B.1
  • 12
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • Charlesworth B, Morgan MT, Charlesworth D. 1993. The effect of deleterious mutations on neutral molecular variation. Genetics 134:1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 13
    • 70350048798 scopus 로고    scopus 로고
    • The genetics of inbreeding depression
    • Charlesworth D, Willis JH. 2009. The genetics of inbreeding depression. Nat Rev Genet. 10:783-796.
    • (2009) Nat Rev Genet. , vol.10 , pp. 783-796
    • Charlesworth, D.1    Willis, J.H.2
  • 14
    • 77649260327 scopus 로고    scopus 로고
    • Population differentiation as a test for selective sweeps
    • Chen H, Patterson N, Reich D. 2010. Population differentiation as a test for selective sweeps. Genome Res. 20:393-402.
    • (2010) Genome Res. , vol.20 , pp. 393-402
    • Chen, H.1    Patterson, N.2    Reich, D.3
  • 15
    • 84867301515 scopus 로고    scopus 로고
    • Predicting the functional effect of amino acid substitutions and indels
    • Choi Y, Sims GE, Murphy S, Miller JR, Chan AP. 2012. Predicting the functional effect of amino acid substitutions and indels. PLoS One 7:e46688.
    • (2012) PLoS One , vol.7 , pp. e46688
    • Choi, Y.1    Sims, G.E.2    Murphy, S.3    Miller, J.R.4    Chan, A.P.5
  • 16
    • 84946220596 scopus 로고    scopus 로고
    • Three geographically separate domestications of Asian rice
    • Civian P, Craig H, Cox CJ, Brown TA. 2015. Three geographically separate domestications of Asian rice. Nature Plants 1:15164.
    • (2015) Nature Plants , vol.1 , pp. 15164
    • Civian, P.1    Craig, H.2    Cox, C.J.3    Brown, T.A.4
  • 18
    • 84926169268 scopus 로고    scopus 로고
    • No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans
    • Do R, Balick D, Li H, Adzhubei I, Sunyaev S, Reich D. 2015. No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans. Nat Genet. 47:126-131.
    • (2015) Nat Genet. , vol.47 , pp. 126-131
    • Do, R.1    Balick, D.2    Li, H.3    Adzhubei, I.4    Sunyaev, S.5    Reich, D.6
  • 19
    • 76549092570 scopus 로고    scopus 로고
    • Evolution in health and medicine sackler colloquium: Genetic architecture of a complex trait and its implications for fitness and genome-wide association studies
    • Eyre-Walker A. 2010. Evolution in health and medicine Sackler colloquium: genetic architecture of a complex trait and its implications for fitness and genome-wide association studies. Proc Natl Acad Sci U S A. 107 Suppl 1:1752-1756.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 1752-1756
    • Eyre-Walker, A.1
  • 20
    • 68949202924 scopus 로고    scopus 로고
    • Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change
    • Eyre-Walker A, Keightley PD. 2009. Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change. Mol Biol Evol. 26:2097-2108.
    • (2009) Mol Biol Evol. , vol.26 , pp. 2097-2108
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 21
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive darwinian selection
    • Fay JC, Wu CI. 2000. Hitchhiking under positive Darwinian selection. Genetics 155:1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 22
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein J. 1974. The evolutionary advantage of recombination. Genetics 78:737-756.
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 23
    • 0017077553 scopus 로고
    • The evolutionary advantage of recombination. II. Individual selection for recombination
    • Felsenstein J, Yokoyama S. 1976. The evolutionary advantage of recombination. II. Individual selection for recombination. Genetics 83:845-859.
    • (1976) Genetics , vol.83 , pp. 845-859
    • Felsenstein, J.1    Yokoyama, S.2
  • 24
    • 49849083288 scopus 로고    scopus 로고
    • Nonindependent domestication of the two rice subspecies, oryza sativa ssp indica and ssp japonica, demonstrated by multilocus microsatellites
    • Gao LZ, Innan H. 2008. Nonindependent domestication of the two rice subspecies, Oryza sativa ssp. indica and ssp. japonica, demonstrated by multilocus microsatellites. Genetics 179:965-976.
    • (2008) Genetics , vol.179 , pp. 965-976
    • Gao, L.Z.1    Innan, H.2
  • 25
    • 84936877544 scopus 로고    scopus 로고
    • Evolution is an experiment: Assessing parallelism in crop domestication and experimental evolution: (Nei lecture, SMBE 2014, Puerto Rico)
    • Gaut BS. 2015. Evolution is an experiment: assessing parallelism in crop domestication and experimental evolution: (Nei Lecture, SMBE 2014, Puerto Rico). Mol Biol Evol. 32:1661-1671.
    • (2015) Mol Biol Evol. , vol.32 , pp. 1661-1671
    • Gaut, B.S.1
  • 26
    • 0029812835 scopus 로고    scopus 로고
    • Substitution rate comparisons between grasses and palms: Synonymous rate differences at the nuclear gene adh parallel rate differences at the plastid gene rbcL
    • Gaut BS, Morton BR, McCaig BC, Clegg MT. 1996. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc Natl Acad Sci U S A. 93:10274-10279.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10274-10279
    • Gaut, B.S.1    Morton, B.R.2    McCaig, B.C.3    Clegg, M.T.4
  • 27
  • 28
    • 84887109646 scopus 로고    scopus 로고
    • Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect
    • Gazave E, Chang D, Clark AG, Keinan A. 2013. Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect. Genetics 195:969-978.
    • (2013) Genetics , vol.195 , pp. 969-978
    • Gazave, E.1    Chang, D.2    Clark, A.G.3    Keinan, A.4
  • 30
    • 77955504857 scopus 로고    scopus 로고
    • Deleterious amino acid polymorphisms in arabidopsis thaliana and rice
    • Gunther T, Schmid KJ. 2010. Deleterious amino acid polymorphisms in Arabidopsis thaliana and rice. Theor Appl Genet. 121:157-168.
    • (2010) Theor Appl Genet. , vol.121 , pp. 157-168
    • Gunther, T.1    Schmid, K.J.2
  • 31
    • 80052264437 scopus 로고    scopus 로고
    • Recombination and hitchhiking of deleterious alleles
    • Hartfield M, Otto SP. 2011. Recombination and hitchhiking of deleterious alleles. Evolution 65:2421-2434.
    • (2011) Evolution , vol.65 , pp. 2421-2434
    • Hartfield, M.1    Otto, S.P.2
  • 35
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill WG, Robertson A. 1966. The effect of linkage on limits to artificial selection. Genet Res. 8:269-294.
    • (1966) Genet Res. , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 38
    • 84655176647 scopus 로고    scopus 로고
    • Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm
    • Huang X, Zhao Y, Wei X, Li C, Wang A, Zhao Q, Li W, Guo Y, Deng L, Zhu C, et al. 2012c. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet. 44:32-39.
    • (2012) Nat Genet. , vol.44 , pp. 32-39
    • Huang, X.1    Zhao, Y.2    Wei, X.3    Li, C.4    Wang, A.5    Zhao, Q.6    Li, W.7    Guo, Y.8    Deng, L.9    Zhu, C.10
  • 39
    • 84949793673 scopus 로고    scopus 로고
    • Rice domestication occurred through single origin and multiple introgressions
    • Huang X, Han B. 2015. Rice domestication occurred through single origin and multiple introgressions. Nature Plants DOI: 10.1038/NPLANTS.2015.207.
    • (2015) Nature Plants
    • Huang, X.1    Han, B.2
  • 40
    • 84930926394 scopus 로고    scopus 로고
    • Comparative population genomics reveals strong divergence and infrequent introgression between Asian and African rice
    • Huang X, Zhao Y, Bin H. 2015. Comparative population genomics reveals strong divergence and infrequent introgression between Asian and African rice. Mol Plant 8:958-960.
    • (2015) Mol Plant , vol.8 , pp. 958-960
    • Huang, X.1    Zhao, Y.2    Bin, H.3
  • 42
    • 84979917173 scopus 로고    scopus 로고
    • Inferring the frequency spectrum of derived variants to quantify adaptive molecular evolution in protein-coding genes of drosophila mela-nogaster
    • Keightley PD, Campos JL, Booker TR, Charlesworth B. 2016. Inferring the frequency spectrum of derived variants to quantify adaptive molecular evolution in protein-coding genes of Drosophila mela-nogaster. Genetics 203:975-984.
    • (2016) Genetics , vol.203 , pp. 975-984
    • Keightley, P.D.1    Campos, J.L.2    Booker, T.R.3    Charlesworth, B.4
  • 45
    • 34147116715 scopus 로고    scopus 로고
    • Most rare missense alleles are deleterious in humans: Implications for complex disease and association studies
    • Kryukov GV, Pennacchio LA, Sunyaev SR. 2007. Most rare missense alleles are deleterious in humans: implications for complex disease and association studies. Am J Hum Genet. 80:727-739.
    • (2007) Am J Hum Genet. , vol.80 , pp. 727-739
    • Kryukov, G.V.1    Pennacchio, L.A.2    Sunyaev, S.R.3
  • 46
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar P, Henikoff S, Ng PC. 2009. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc. 4:1073-1081.
    • (2009) Nat Protoc. , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 47
    • 0000181737 scopus 로고
    • The jackknife and the bootstrap for general stationary observations
    • Kunsch HR. 1989. The jackknife and the bootstrap for general stationary observations. Ann Stat. 1217-1241.
    • (1989) Ann Stat. , pp. 1217-1241
    • Kunsch, H.R.1
  • 48
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • IRGSP, International Rice Genome Sequencing Project
    • IRGSP, International Rice Genome Sequencing Project. 2005. The map-based sequence of the rice genome. Nature 436:793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 49
    • 0022236684 scopus 로고
    • The evolution of self-fertilization and inbreeding depression in plants. I. Genetic models
    • Lande R, Schemske DW. 1985. The evolution of self-fertilization and inbreeding depression in plants. I. Genetic models. Evolution 39:24-40.
    • (1985) Evolution , vol.39 , pp. 24-40
    • Lande, R.1    Schemske, D.W.2
  • 50
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with burrows-wheeler transform
    • Li H, Durbin R. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26:589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 52
    • 84922808438 scopus 로고    scopus 로고
    • The 3,000 rice genomes project: New opportunities and challenges for future rice research
    • Li JY, Wang J, Zeigler RS. 2014. The 3,000 rice genomes project: new opportunities and challenges for future rice research. Gigascience 3:8.
    • (2014) Gigascience , vol.3 , pp. 8
    • Li, J.Y.1    Wang, J.2    Zeigler, R.S.3
  • 53
    • 84901608835 scopus 로고    scopus 로고
    • The impact of population demography and selection on the genetic architecture of complex traits
    • Lohmueller KE. 2014a. The impact of population demography and selection on the genetic architecture of complex traits. PLoS Genet. 10:e1004379.
    • (2014) PLoS Genet. , vol.10 , pp. e1004379
    • Lohmueller, K.E.1
  • 54
    • 84906497659 scopus 로고    scopus 로고
    • The distribution of deleterious genetic variation in human populations
    • Lohmueller KE. 2014b. The distribution of deleterious genetic variation in human populations. Curr Opin Genet Dev. 29:139-146.
    • (2014) Curr Opin Genet Dev. , vol.29 , pp. 139-146
    • Lohmueller, K.E.1
  • 56
    • 33745439823 scopus 로고    scopus 로고
    • Phylogeography of Asian wild rice, oryza rufipogon, reveals multiple independent domestications of cultivated rice, oryza sativa
    • Londo JP, Chiang YC, Hung KH, Chiang TY, Schaal BA. 2006. Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. Proc Natl Acad Sci U S A. 103:9578-9583.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 9578-9583
    • Londo, J.P.1    Chiang, Y.C.2    Hung, K.H.3    Chiang, T.Y.4    Schaal, B.A.5
  • 57
    • 33344458581 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication
    • Lu J, Tang T, Tang H, Huang J, Shi S, Wu CI. 2006. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. Trends Genet. 22:126-131.
    • (2006) Trends Genet. , vol.22 , pp. 126-131
    • Lu, J.1    Tang, T.2    Tang, H.3    Huang, J.4    Shi, S.5    Wu, C.I.6
  • 58
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: A statistical algorithm for sensitive and fast mapping of illumina sequence reads
    • Lunter G, Goodson M. 2011. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 21:936-939.
    • (2011) Genome Res. , vol.21 , pp. 936-939
    • Lunter, G.1    Goodson, M.2
  • 59
    • 4143105022 scopus 로고    scopus 로고
    • Recombination and base composition: The case of the highly self-fertilizing plant arabidopsis thaliana
    • Marais G, Charlesworth B, Wright SI. 2004. Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thaliana. Genome Biol. 5:R45.
    • (2004) Genome Biol. , vol.5 , pp. R45
    • Marais, G.1    Charlesworth, B.2    Wright, S.I.3
  • 62
    • 84881041428 scopus 로고    scopus 로고
    • SLiM: Simulating evolution with selection and linkage
    • Messer PW. 2013. SLiM: simulating evolution with selection and linkage. Genetics 194:1037-1039.
    • (2013) Genetics , vol.194 , pp. 1037-1039
    • Messer, P.W.1
  • 64
    • 84892716897 scopus 로고    scopus 로고
    • The pattern and distribution of deleterious mutations in maize
    • Mezmouk S, Ross-Ibarra J. 2014. The pattern and distribution of deleterious mutations in maize. G3 (Bethesda) 4:163-171.
    • (2014) G3 (Bethesda) , vol.4 , pp. 163-171
    • Mezmouk, S.1    Ross-Ibarra, J.2
  • 69
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: Predicting amino acid changes that affect protein function
    • Ng PC, Henikoff S. 2003. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res. 31:3812-3814.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 70
    • 0033962299 scopus 로고    scopus 로고
    • Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization
    • Nordborg M. 2000. Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization. Genetics 154:923-929.
    • (2000) Genetics , vol.154 , pp. 923-929
    • Nordborg, M.1
  • 71
    • 0003820722 scopus 로고
    • Tokyo: Japan Scientific Societies Press and Elsevier Science Publishers
    • Oka HI. 1988. Origin of cultivated rice. Tokyo: Japan Scientific Societies Press and Elsevier Science Publishers.
    • (1988) Origin of Cultivated Rice
    • Oka, H.I.1
  • 72
    • 0000823590 scopus 로고
    • Variations in the breeding systems of a wild rice, oryza perennis
    • Oka HI, Miroshima H. 1967. Variations in the breeding systems of a wild rice, Oryza perennis. Evolution 21:249-258.
    • (1967) Evolution , vol.21 , pp. 249-258
    • Oka, H.I.1    Miroshima, H.2
  • 73
    • 84883252048 scopus 로고    scopus 로고
    • SweeD: Likelihood-based detection of selective sweeps in thousands of genomes
    • Pavlidis P, Zivkovic D, Stamatakis A, Alachiotis N. 2013. SweeD: likelihood-based detection of selective sweeps in thousands of genomes. Mol Biol Evol. 30:2224-2234.
    • (2013) Mol Biol Evol. , vol.30 , pp. 2224-2234
    • Pavlidis, P.1    Zivkovic, D.2    Stamatakis, A.3    Alachiotis, N.4
  • 75
    • 84890120078 scopus 로고    scopus 로고
    • On the accumulation of deleterious mutations during range expansions
    • Peischl S, Dupanloup I, Kirkpatrick M, Excoffier L. 2013. On the accumulation of deleterious mutations during range expansions. Mol Ecol. 22:5972-5982.
    • (2013) Mol Ecol. , vol.22 , pp. 5972-5982
    • Peischl, S.1    Dupanloup, I.2    Kirkpatrick, M.3    Excoffier, L.4
  • 76
    • 60149084807 scopus 로고    scopus 로고
    • The nature of selection during plant domestication
    • Purugganan MD, Fuller DQ. 2009. The nature of selection during plant domestication. Nature 457:843-848.
    • (2009) Nature , vol.457 , pp. 843-848
    • Purugganan, M.D.1    Fuller, D.Q.2
  • 77
    • 84949461386 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations as a consequence of domestication and improvement in sunflowers and other composite crops
    • Renaut S, Rieseberg LH. 2015. The accumulation of deleterious mutations as a consequence of domestication and improvement in sunflowers and other composite crops. Mol Biol Evol. 32:2273-2283.
    • (2015) Mol Biol Evol. , vol.32 , pp. 2273-2283
    • Renaut, S.1    Rieseberg, L.H.2
  • 80
    • 34347262453 scopus 로고    scopus 로고
    • The puzzle of rice domestication
    • Sang T, Ge S. 2007. The puzzle of rice domestication. J Int Plant Bio. 49:760-768.
    • (2007) J Int Plant Bio. , vol.49 , pp. 760-768
    • Sang, T.1    Ge, S.2
  • 82
    • 84895867277 scopus 로고    scopus 로고
    • The deleterious mutation load is insensitive to recent population history
    • Simons YB, Turchin MC, Pritchard JK, Sella G. 2014. The deleterious mutation load is insensitive to recent population history. Nat Genet. 46:220-224.
    • (2014) Nat Genet. , vol.46 , pp. 220-224
    • Simons, Y.B.1    Turchin, M.C.2    Pritchard, J.K.3    Sella, G.4
  • 83
    • 0000951644 scopus 로고    scopus 로고
    • Is self-fertilization an evolutionary dead end? Revisiting an old hypothesis with genetic theories and a macro-evolutionary approach
    • Takebayashi N, Morrell PL. 2001. Is self-fertilization an evolutionary dead end? Revisiting an old hypothesis with genetic theories and a macro-evolutionary approach. Am J Bot. 88:1143-1150.
    • (2001) Am J Bot. , vol.88 , pp. 1143-1150
    • Takebayashi, N.1    Morrell, P.L.2
  • 84
    • 84976870628 scopus 로고    scopus 로고
    • Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants
    • Uricchio LH, Zaitlen NA, Ye CJ, Witte JS, Hernandez RD. 2016. Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants. Genome Res. 26:863-873.
    • (2016) Genome Res. , vol.26 , pp. 863-873
    • Uricchio, L.H.1    Zaitlen, N.A.2    Ye, C.J.3    Witte, J.S.4    Hernandez, R.D.5
  • 86
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang K, Li M, Hakonarson H. 2010. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38:e164.
    • (2010) Nucleic Acids Res. , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 91
    • 33847661877 scopus 로고    scopus 로고
    • Multilocus analysis of nucleotide variation of oryza sativa and its wild relatives: Severe bottleneck during domestication of rice
    • Zhu Q, Zheng X, Luo J, Gaut BS, Ge S. 2007. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Mol Biol Evol. 24:875-888.
    • (2007) Mol Biol Evol. , vol.24 , pp. 875-888
    • Zhu, Q.1    Zheng, X.2    Luo, J.3    Gaut, B.S.4    Ge, S.5
  • 92
    • 21244501403 scopus 로고    scopus 로고
    • Phylogenetic relationships among A-genome species of the genus oryza revealed by intron sequences of four nuclear genes
    • Zhu QH, Ge S. 2005. Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. New Phytologist 167:249-265.
    • (2005) New Phytologist , vol.167 , pp. 249-265
    • Zhu, Q.H.1    Ge, S.2


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