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Volumn 28, Issue 8, 2011, Pages 2239-2252

Testing for ancient admixture between closely related populations

Author keywords

admixture; gene genealogies; lineage sorting

Indexed keywords

ARTICLE; FALSE POSITIVE RESULT; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE SEQUENCE; GENETIC COMPLEMENTATION; HUMAN GENOME; INBREEDING; MATING TYPE; PHYLOGENETIC TREE; POPULATION GENETIC STRUCTURE; SENSITIVITY ANALYSIS;

EID: 79961039058     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr048     Document Type: Article
Times cited : (871)

References (33)
  • 1
    • 0035043379 scopus 로고    scopus 로고
    • The role of hybridization in evolution
    • DOI 10.1046/j.1365-294X.2001.01216.x
    • Barton N. 2001. The role of hybridization in evolution. Mol Ecol. 10:551-568. (Pubitemid 32406342)
    • (2001) Molecular Ecology , vol.10 , Issue.3 , pp. 551-568
    • Barton, N.H.1
  • 3
    • 27544474337 scopus 로고    scopus 로고
    • Ascertainment bias in studies of human genome-wide polymorphism
    • DOI 10.1101/gr.4107905
    • Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. 2005. Ascertainment bias in studies of human genome-wide polymorphism. Genome Res. 15(11):1496-1502. (Pubitemid 41545003)
    • (2005) Genome Research , vol.15 , Issue.11 , pp. 1496-1502
    • Clark, A.G.1    Hubisz, M.J.2    Bustamante, C.D.3    Williamson, S.H.4    Nielsen, R.5
  • 4
    • 14044258418 scopus 로고    scopus 로고
    • Modern humans did not admix with Neanderthals during their range expansion into Europe
    • Currat M, Excoffier L. 2004. Modern humans did not admix with Neanderthals during their range expansion into Europe. PLoS Biol. 2(12):e421.
    • (2004) PLoS Biol. , vol.2 , Issue.12
    • Currat, M.1    Excoffier, L.2
  • 5
    • 47749139699 scopus 로고    scopus 로고
    • The hidden side of invasions: Massive introgression by local genes
    • DOI 10.1111/j.1558-5646.2008.00413.x
    • Currat M, Ruedi M, Petit RJ, Excoffier L. 2008. The hidden side of invasions: massive introgression by local genes. Evolution. 62(8):1908-1920. (Pubitemid 352033252)
    • (2008) Evolution , vol.62 , Issue.8 , pp. 1908-1920
    • Currat, M.1    Ruedi, M.2    Petit, R.J.3    Excoffier, L.4
  • 6
    • 0033815184 scopus 로고    scopus 로고
    • An analysis of strategies for discovery of single-nucleotide polymorphisms
    • Eberle M, Kruglyak L. 2000. An analysis of strategies for discovery of single-nucleotide polymorphisms. Genet Epidemiol. 19(Suppl 1):S29-S35.
    • (2000) Genet Epidemiol , vol.19 , Issue.1 SUPPL.
    • Eberle, M.1    Kruglyak, L.2
  • 7
    • 0001077032 scopus 로고
    • Nonparametric estimates of standard error: The jackknife, the bootstrap and other methods
    • Efron B. 1981. Nonparametric estimates of standard error: the jackknife, the bootstrap and other methods. Biometrika. 68 3:589-599.
    • (1981) Biometrika , vol.68 , Issue.3 , pp. 589-599
    • Efron, B.1
  • 8
    • 54449087917 scopus 로고    scopus 로고
    • A deterministic model of admixture and genetic introgression: The case of Neanderthal and Cro-Magnon
    • Forhan G, Martiel J, Blum M. 2008. A deterministic model of admixture and genetic introgression: the case of Neanderthal and Cro-Magnon. Math Biosci. 216:71-76.
    • (2008) Math Biosci , vol.216 , pp. 71-76
    • Forhan, G.1    Martiel, J.2    Blum, M.3
  • 9
    • 18744366079 scopus 로고    scopus 로고
    • Did early humans go north or south?
    • DOI 10.1126/science.1113261
    • Forster P, Matsumura S. 2005. Evolution-did early humans go north or south? Science 308(5724):965-966. (Pubitemid 40664393)
    • (2005) Science , vol.308 , Issue.5724 , pp. 965-966
    • Forster, P.1    Matsumura, S.2
  • 10
    • 77952136530 scopus 로고    scopus 로고
    • A draft sequence of the Neandertal genome
    • 56 co-authors
    • Green RE, Krause J, Briggs AW, et al. (56 co-authors). 2010. A draft sequence of the Neandertal genome. Science. 328(5979):710-722.
    • (2010) Science , vol.328 , Issue.5979 , pp. 710-722
    • Green, R.E.1    Krause, J.2    Briggs, A.W.3
  • 12
    • 48649096196 scopus 로고    scopus 로고
    • A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing
    • 25 co-authors
    • Green RE, Malaspinas AS, Krause J, et al. (25 co-authors). 2008. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell 134(3):416-426.
    • (2008) Cell , vol.134 , Issue.3 , pp. 416-426
    • Green, R.E.1    Malaspinas, A.S.2    Krause, J.3
  • 15
    • 0000424609 scopus 로고
    • Testing the constant-rate neutral allele model with protein-sequence data
    • Hudson RR. 1983. Testing the constant-rate neutral allele model with protein-sequence data. Evolution 37(1):203-217.
    • (1983) Evolution , vol.37 , Issue.1 , pp. 203-217
    • Hudson, R.R.1
  • 16
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18(2):337-338. (Pubitemid 34183119)
    • (2002) Bioinformatics , vol.18 , Issue.2 , pp. 337-338
    • Hudson, R.R.1
  • 18
    • 0031470484 scopus 로고    scopus 로고
    • Neandertal DNA sequences and the origin of modern humans
    • DOI 10.1016/S0092-8674(00)80310-4
    • Krings M, Stone A, Schmitz RW, Krainitzki H, Stoneking M, Pääbo S. 1997. Neandertal DNA sequences and the origin of modern humans. Cell 90(1):19-30. (Pubitemid 28009415)
    • (1997) Cell , vol.90 , Issue.1 , pp. 19-30
    • Krings, M.1    Stone, A.2    Schmitz, R.W.3    Krainitzki, H.4    Stoneking, M.5    Paabo, S.6
  • 19
    • 0033832928 scopus 로고    scopus 로고
    • Usefulness of single nucleotide polymorphism data for estimating population parameters
    • Kuhner MK, Beerli P, Yamato J, Felsenstein J. 2000. Usefulness of single nucleotide polymorphism data for estimating population parameters. Genetics 156(1):439-447.
    • (2000) Genetics , vol.156 , Issue.1 , pp. 439-447
    • Kuhner, M.K.1    Beerli, P.2    Yamato, J.3    Felsenstein, J.4
  • 21
    • 58249136809 scopus 로고    scopus 로고
    • Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
    • Meng C, Kubatko LS. 2009. Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model. Theor Popul Biol. 75(1):35-45.
    • (2009) Theor Popul Biol. , vol.75 , Issue.1 , pp. 35-45
    • Meng, C.1    Kubatko, L.S.2
  • 22
    • 11244313872 scopus 로고    scopus 로고
    • Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data
    • DOI 10.1534/genetics.104.031039
    • Nielsen R, Hubisz M, Clark A. 2004. Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data. Genetics 168(4):2373-2382. (Pubitemid 40066369)
    • (2004) Genetics , vol.168 , Issue.4 , pp. 2373-2382
    • Nielsen, R.1    Hubisz, M.J.2    Clark, A.G.3
  • 24
    • 0036860764 scopus 로고    scopus 로고
    • Associations between cytoplasmic and nuclear loci in hybridizing populations
    • Orive ME, Barton NH. 2002. Associations between cytoplasmic and nuclear loci in hybridizing populations. Genetics. 162 3:1469-1485. (Pubitemid 35417535)
    • (2002) Genetics , vol.162 , Issue.3 , pp. 1469-1485
    • Orive, M.E.1    Barton, N.H.2
  • 25
    • 33746585377 scopus 로고    scopus 로고
    • Possible ancestral structure in human populations
    • Plagnol V, Wall JD. 2006. Possible ancestral structure in human populations. PLoS Genet. 2(7):e105.
    • (2006) PLoS Genet. , vol.2 , Issue.7
    • Plagnol, V.1    Wall, J.D.2
  • 27
    • 19344377078 scopus 로고    scopus 로고
    • No evidence of Neandertal mtDNA contribution to early modern humans
    • Serre D, et al. 2004. No evidence of Neandertal mtDNA contribution to early modern humans. PLoS Biol. 2(3):E57.
    • (2004) PLoS Biol. , vol.2 , Issue.3
    • Serre, D.1
  • 28
    • 0026050476 scopus 로고
    • Inbreeding coefficients and coalescence times
    • Slatkin M. 1991. Inbreeding coefficients and coalescence times. Genet Res. 58(2):167-175.
    • (1991) Genet Res. , vol.58 , Issue.2 , pp. 167-175
    • Slatkin, M.1
  • 29
    • 52449121772 scopus 로고    scopus 로고
    • Subdivision in an ancestral species creates asymmetry in gene trees
    • Slatkin M, Pollack JL. 2008. Subdivision in an ancestral species creates asymmetry in gene trees. Mol Biol Evol. 25(10):2241-2246.
    • (2008) Mol Biol Evol. , vol.25 , Issue.10 , pp. 2241-2246
    • Slatkin, M.1    Pollack, J.L.2
  • 30
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460. (Pubitemid 14247444)
    • (1983) Genetics , vol.105 , Issue.2 , pp. 437-460
    • Tajima, F.1
  • 31
    • 0034090691 scopus 로고    scopus 로고
    • Detecting ancient admixture in humans using sequence polymorphism data
    • Wall JD. 2000. Detecting ancient admixture in humans using sequence polymorphism data. Genetics 154(3):1271-1279. (Pubitemid 30140711)
    • (2000) Genetics , vol.154 , Issue.3 , pp. 1271-1279
    • Wall, J.D.1
  • 32
    • 33750951625 scopus 로고    scopus 로고
    • Archaic admixture in the human genome
    • DOI 10.1016/j.gde.2006.09.006, PII S0959437X06001997, Genomes and Evolution
    • Wall JD, Hammer MF. 2006. Archaic admixture in the human genome. Curr Opin Genet Dev. 16(6):606-610. (Pubitemid 44738523)
    • (2006) Current Opinion in Genetics and Development , vol.16 , Issue.6 , pp. 606-610
    • Wall, J.D.1    Hammer, M.F.2
  • 33
    • 67749111629 scopus 로고    scopus 로고
    • Detecting ancient admixture and estimating demographic parameters in multiple human populations
    • Wall JD, Lohmueller KE, Plagnol V. 2009. Detecting ancient admixture and estimating demographic parameters in multiple human populations. Mol Biol Evol. 26(8):1823-1827.
    • (2009) Mol Biol Evol. , vol.26 , Issue.8 , pp. 1823-1827
    • Wall, J.D.1    Lohmueller, K.E.2    Plagnol, V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.