-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., Huber, W., Differential expression analysis for sequence count data. Genome Biol., 11, 2010, R106.
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
2
-
-
84928987900
-
HTSeq–a Python framework to work with high-throughput sequencing data
-
Anders, S., Pyl, P.T., Huber, W., HTSeq–a Python framework to work with high-throughput sequencing data. Bioinformatics 31 (2015), 166–169.
-
(2015)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
3
-
-
33749130424
-
Lens specification is the ground state of all sensory placodes, from which FGF promotes olfactory identity
-
Bailey, A.P., Bhattacharyya, S., Bronner-Fraser, M., Streit, A., Lens specification is the ground state of all sensory placodes, from which FGF promotes olfactory identity. Dev. Cell 11 (2006), 505–517.
-
(2006)
Dev. Cell
, vol.11
, pp. 505-517
-
-
Bailey, A.P.1
Bhattacharyya, S.2
Bronner-Fraser, M.3
Streit, A.4
-
4
-
-
84867028809
-
Endogenous Wnt signalling in human embryonic stem cells generates an equilibrium of distinct lineage-specified progenitors
-
Blauwkamp, T.A., Nigam, S., Ardehali, R., Weissman, I.L., Nusse, R., Endogenous Wnt signalling in human embryonic stem cells generates an equilibrium of distinct lineage-specified progenitors. Nat. Commun., 3, 2012, 1070.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1070
-
-
Blauwkamp, T.A.1
Nigam, S.2
Ardehali, R.3
Weissman, I.L.4
Nusse, R.5
-
5
-
-
79960064013
-
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
-
Cermak, T., Doyle, E.L., Christian, M., Wang, L., Zhang, Y., Schmidt, C., Baller, J.A., Somia, N.V., Bogdanove, A.J., Voytas, D.F., Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res., 39, 2011, e82.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. e82
-
-
Cermak, T.1
Doyle, E.L.2
Christian, M.3
Wang, L.4
Zhang, Y.5
Schmidt, C.6
Baller, J.A.7
Somia, N.V.8
Bogdanove, A.J.9
Voytas, D.F.10
-
6
-
-
62149125434
-
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
-
Chambers, S.M., Fasano, C.A., Papapetrou, E.P., Tomishima, M., Sadelain, M., Studer, L., Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling. Nat. Biotechnol. 27 (2009), 275–280.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 275-280
-
-
Chambers, S.M.1
Fasano, C.A.2
Papapetrou, E.P.3
Tomishima, M.4
Sadelain, M.5
Studer, L.6
-
7
-
-
84863671840
-
Combined small-molecule inhibition accelerates developmental timing and converts human pluripotent stem cells into nociceptors
-
Chambers, S.M., Qi, Y., Mica, Y., Lee, G., Zhang, X.J., Niu, L., Bilsland, J., Cao, L., Stevens, E., Whiting, P., et al. Combined small-molecule inhibition accelerates developmental timing and converts human pluripotent stem cells into nociceptors. Nat. Biotechnol. 30 (2012), 715–720.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 715-720
-
-
Chambers, S.M.1
Qi, Y.2
Mica, Y.3
Lee, G.4
Zhang, X.J.5
Niu, L.6
Bilsland, J.7
Cao, L.8
Stevens, E.9
Whiting, P.10
-
8
-
-
79955611823
-
Chemically defined conditions for human iPSC derivation and culture
-
Chen, G., Gulbranson, D.R., Hou, Z., Bolin, J.M., Ruotti, V., Probasco, M.D., Smuga-Otto, K., Howden, S.E., Diol, N.R., Propson, N.E., et al. Chemically defined conditions for human iPSC derivation and culture. Nat. Methods 8 (2011), 424–429.
-
(2011)
Nat. Methods
, vol.8
, pp. 424-429
-
-
Chen, G.1
Gulbranson, D.R.2
Hou, Z.3
Bolin, J.M.4
Ruotti, V.5
Probasco, M.D.6
Smuga-Otto, K.7
Howden, S.E.8
Diol, N.R.9
Propson, N.E.10
-
9
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., Ran, F.A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P.D., Wu, X., Jiang, W., Marraffini, L.A., Zhang, F., Multiplex genome engineering using CRISPR/Cas systems. Science 339 (2013), 819–823.
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
Hsu, P.D.7
Wu, X.8
Jiang, W.9
Marraffini, L.A.10
Zhang, F.11
-
10
-
-
84890143546
-
Specification of functional cranial placode derivatives from human pluripotent stem cells
-
Dincer, Z., Piao, J., Niu, L., Ganat, Y., Kriks, S., Zimmer, B., Shi, S.H., Tabar, V., Studer, L., Specification of functional cranial placode derivatives from human pluripotent stem cells. Cell Rep. 5 (2013), 1387–1402.
-
(2013)
Cell Rep.
, vol.5
, pp. 1387-1402
-
-
Dincer, Z.1
Piao, J.2
Niu, L.3
Ganat, Y.4
Kriks, S.5
Zimmer, B.6
Shi, S.H.7
Tabar, V.8
Studer, L.9
-
11
-
-
84864475122
-
TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction
-
W117-22
-
Doyle, E.L., Booher, N.J., Standage, D.S., Voytas, D.F., Brendel, V.P., Vandyk, J.K., Bogdanove, A.J., TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction. Nucleic Acids Res., 40, 2012 W117-22.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Doyle, E.L.1
Booher, N.J.2
Standage, D.S.3
Voytas, D.F.4
Brendel, V.P.5
Vandyk, J.K.6
Bogdanove, A.J.7
-
12
-
-
84880443207
-
LifeMap Discovery™: the embryonic development, stem cells, and regenerative medicine research portal
-
Edgar, R., Mazor, Y., Rinon, A., Blumenthal, J., Golan, Y., Buzhor, E., Livnat, I., Ben-Ari, S., Lieder, I., Shitrit, A., et al. LifeMap Discovery™: the embryonic development, stem cells, and regenerative medicine research portal. PLoS ONE, 8, 2013, e66629.
-
(2013)
PLoS ONE
, vol.8
, pp. e66629
-
-
Edgar, R.1
Mazor, Y.2
Rinon, A.3
Blumenthal, J.4
Golan, Y.5
Buzhor, E.6
Livnat, I.7
Ben-Ari, S.8
Lieder, I.9
Shitrit, A.10
-
13
-
-
84960145334
-
Deriving human ENS lineages for cell therapy and drug discovery in Hirschsprung disease
-
Fattahi, F., Steinbeck, J.A., Kriks, S., Tchieu, J., Zimmer, B., Kishinevsky, S., Zeltner, N., Mica, Y., El-Nachef, W., Zhao, H., et al. Deriving human ENS lineages for cell therapy and drug discovery in Hirschsprung disease. Nature 531 (2016), 105–109.
-
(2016)
Nature
, vol.531
, pp. 105-109
-
-
Fattahi, F.1
Steinbeck, J.A.2
Kriks, S.3
Tchieu, J.4
Zimmer, B.5
Kishinevsky, S.6
Zeltner, N.7
Mica, Y.8
El-Nachef, W.9
Zhao, H.10
-
14
-
-
84902601220
-
Differential role of nonhomologous end joining factors in the generation, DNA damage response, and myeloid differentiation of human induced pluripotent stem cells
-
Felgentreff, K., Du, L., Weinacht, K.G., Dobbs, K., Bartish, M., Giliani, S., Schlaeger, T., DeVine, A., Schambach, A., Woodbine, L.J., et al. Differential role of nonhomologous end joining factors in the generation, DNA damage response, and myeloid differentiation of human induced pluripotent stem cells. Proc. Natl. Acad. Sci. USA 111 (2014), 8889–8894.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 8889-8894
-
-
Felgentreff, K.1
Du, L.2
Weinacht, K.G.3
Dobbs, K.4
Bartish, M.5
Giliani, S.6
Schlaeger, T.7
DeVine, A.8
Schambach, A.9
Woodbine, L.J.10
-
15
-
-
33750936779
-
Wnt and TGF-beta signaling are required for the induction of an in vitro model of primitive streak formation using embryonic stem cells
-
Gadue, P., Huber, T.L., Paddison, P.J., Keller, G.M., Wnt and TGF-beta signaling are required for the induction of an in vitro model of primitive streak formation using embryonic stem cells. Proc. Natl. Acad. Sci. USA 103 (2006), 16806–16811.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 16806-16811
-
-
Gadue, P.1
Huber, T.L.2
Paddison, P.J.3
Keller, G.M.4
-
16
-
-
84901723986
-
Setting appropriate boundaries: fate, patterning and competence at the neural plate border
-
Groves, A.K., LaBonne, C., Setting appropriate boundaries: fate, patterning and competence at the neural plate border. Dev. Biol. 389 (2014), 2–12.
-
(2014)
Dev. Biol.
, vol.389
, pp. 2-12
-
-
Groves, A.K.1
LaBonne, C.2
-
17
-
-
84355166561
-
Dopamine neurons derived from human ES cells efficiently engraft in animal models of Parkinson's disease
-
Kriks, S., Shim, J.W., Piao, J., Ganat, Y.M., Wakeman, D.R., Xie, Z., Carrillo-Reid, L., Auyeung, G., Antonacci, C., Buch, A., et al. Dopamine neurons derived from human ES cells efficiently engraft in animal models of Parkinson's disease. Nature 480 (2011), 547–551.
-
(2011)
Nature
, vol.480
, pp. 547-551
-
-
Kriks, S.1
Shim, J.W.2
Piao, J.3
Ganat, Y.M.4
Wakeman, D.R.5
Xie, Z.6
Carrillo-Reid, L.7
Auyeung, G.8
Antonacci, C.9
Buch, A.10
-
18
-
-
84878819305
-
Differential BMP signaling controls formation and differentiation of multipotent preplacodal ectoderm progenitors from human embryonic stem cells
-
Leung, A.W., Kent Morest, D., Li, J.Y., Differential BMP signaling controls formation and differentiation of multipotent preplacodal ectoderm progenitors from human embryonic stem cells. Dev. Biol. 379 (2013), 208–220.
-
(2013)
Dev. Biol.
, vol.379
, pp. 208-220
-
-
Leung, A.W.1
Kent Morest, D.2
Li, J.Y.3
-
19
-
-
33947140197
-
Redundant activities of Tfap2a and Tfap2c are required for neural crest induction and development of other non-neural ectoderm derivatives in zebrafish embryos
-
Li, W., Cornell, R.A., Redundant activities of Tfap2a and Tfap2c are required for neural crest induction and development of other non-neural ectoderm derivatives in zebrafish embryos. Dev. Biol. 304 (2007), 338–354.
-
(2007)
Dev. Biol.
, vol.304
, pp. 338-354
-
-
Li, W.1
Cornell, R.A.2
-
20
-
-
84896372198
-
Defined human pluripotent stem cell culture enables highly efficient neuroepithelium derivation without small molecule inhibitors
-
Lippmann, E.S., Estevez-Silva, M.C., Ashton, R.S., Defined human pluripotent stem cell culture enables highly efficient neuroepithelium derivation without small molecule inhibitors. Stem Cells 32 (2014), 1032–1042.
-
(2014)
Stem Cells
, vol.32
, pp. 1032-1042
-
-
Lippmann, E.S.1
Estevez-Silva, M.C.2
Ashton, R.S.3
-
21
-
-
84978924170
-
Mapping the Pairwise Choices Leading from Pluripotency to Human Bone, Heart, and Other Mesoderm Cell Types
-
Loh, K.M., Chen, A., Koh, P.W., Deng, T.Z., Sinha, R., Tsai, J.M., Barkal, A.A., Shen, K.Y., Jain, R., Morganti, R.M., et al. Mapping the Pairwise Choices Leading from Pluripotency to Human Bone, Heart, and Other Mesoderm Cell Types. Cell 166 (2016), 451–467.
-
(2016)
Cell
, vol.166
, pp. 451-467
-
-
Loh, K.M.1
Chen, A.2
Koh, P.W.3
Deng, T.Z.4
Sinha, R.5
Tsai, J.M.6
Barkal, A.A.7
Shen, K.Y.8
Jain, R.9
Morganti, R.M.10
-
22
-
-
0037458036
-
Induction of neural crest in Xenopus by transcription factor AP2alpha
-
Luo, T., Lee, Y.H., Saint-Jeannet, J.P., Sargent, T.D., Induction of neural crest in Xenopus by transcription factor AP2alpha. Proc. Natl. Acad. Sci. USA 100 (2003), 532–537.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 532-537
-
-
Luo, T.1
Lee, Y.H.2
Saint-Jeannet, J.P.3
Sargent, T.D.4
-
23
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali, P., Yang, L., Esvelt, K.M., Aach, J., Guell, M., DiCarlo, J.E., Norville, J.E., Church, G.M., RNA-guided human genome engineering via Cas9. Science 339 (2013), 823–826.
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
Norville, J.E.7
Church, G.M.8
-
24
-
-
84877271854
-
Directed differentiation and functional maturation of cortical interneurons from human embryonic stem cells
-
Maroof, A.M., Keros, S., Tyson, J.A., Ying, S.W., Ganat, Y.M., Merkle, F.T., Liu, B., Goulburn, A., Stanley, E.G., Elefanty, A.G., et al. Directed differentiation and functional maturation of cortical interneurons from human embryonic stem cells. Cell Stem Cell 12 (2013), 559–572.
-
(2013)
Cell Stem Cell
, vol.12
, pp. 559-572
-
-
Maroof, A.M.1
Keros, S.2
Tyson, J.A.3
Ying, S.W.4
Ganat, Y.M.5
Merkle, F.T.6
Liu, B.7
Goulburn, A.8
Stanley, E.G.9
Elefanty, A.G.10
-
25
-
-
82755190669
-
Wnt signaling and a Smad pathway blockade direct the differentiation of human pluripotent stem cells to multipotent neural crest cells
-
Menendez, L., Yatskievych, T.A., Antin, P.B., Dalton, S., Wnt signaling and a Smad pathway blockade direct the differentiation of human pluripotent stem cells to multipotent neural crest cells. Proc. Natl. Acad. Sci. USA 108 (2011), 19240–19245.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 19240-19245
-
-
Menendez, L.1
Yatskievych, T.A.2
Antin, P.B.3
Dalton, S.4
-
26
-
-
84876959225
-
Modeling neural crest induction, melanocyte specification, and disease-related pigmentation defects in hESCs and patient-specific iPSCs
-
Mica, Y., Lee, G., Chambers, S.M., Tomishima, M.J., Studer, L., Modeling neural crest induction, melanocyte specification, and disease-related pigmentation defects in hESCs and patient-specific iPSCs. Cell Rep. 3 (2013), 1140–1152.
-
(2013)
Cell Rep.
, vol.3
, pp. 1140-1152
-
-
Mica, Y.1
Lee, G.2
Chambers, S.M.3
Tomishima, M.J.4
Studer, L.5
-
27
-
-
84890109489
-
Human iPSC-based modeling of late-onset disease via progerin-induced aging
-
Miller, J.D., Ganat, Y.M., Kishinevsky, S., Bowman, R.L., Liu, B., Tu, E.Y., Mandal, P.K., Vera, E., Shim, J.W., Kriks, S., et al. Human iPSC-based modeling of late-onset disease via progerin-induced aging. Cell Stem Cell 13 (2013), 691–705.
-
(2013)
Cell Stem Cell
, vol.13
, pp. 691-705
-
-
Miller, J.D.1
Ganat, Y.M.2
Kishinevsky, S.3
Bowman, R.L.4
Liu, B.5
Tu, E.Y.6
Mandal, P.K.7
Vera, E.8
Shim, J.W.9
Kriks, S.10
-
28
-
-
84861170955
-
A transcription activator-like effector toolbox for genome engineering
-
Sanjana, N.E., Cong, L., Zhou, Y., Cunniff, M.M., Feng, G., Zhang, F., A transcription activator-like effector toolbox for genome engineering. Nat. Protoc. 7 (2012), 171–192.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 171-192
-
-
Sanjana, N.E.1
Cong, L.2
Zhou, Y.3
Cunniff, M.M.4
Feng, G.5
Zhang, F.6
-
29
-
-
0029932086
-
Transcription factor AP-2 essential for cranial closure and craniofacial development
-
Schorle, H., Meier, P., Buchert, M., Jaenisch, R., Mitchell, P.J., Transcription factor AP-2 essential for cranial closure and craniofacial development. Nature 381 (1996), 235–238.
-
(1996)
Nature
, vol.381
, pp. 235-238
-
-
Schorle, H.1
Meier, P.2
Buchert, M.3
Jaenisch, R.4
Mitchell, P.J.5
-
30
-
-
84976310841
-
Reprogramming of avian neural crest axial identity and cell fate
-
Simoes-Costa, M., Bronner, M.E., Reprogramming of avian neural crest axial identity and cell fate. Science 352 (2016), 1570–1573.
-
(2016)
Science
, vol.352
, pp. 1570-1573
-
-
Simoes-Costa, M.1
Bronner, M.E.2
-
31
-
-
84942118095
-
Is this a brain which I see before me? Modeling human neural development with pluripotent stem cells
-
Suzuki, I.K., Vanderhaeghen, P., Is this a brain which I see before me? Modeling human neural development with pluripotent stem cells. Development 142 (2015), 3138–3150.
-
(2015)
Development
, vol.142
, pp. 3138-3150
-
-
Suzuki, I.K.1
Vanderhaeghen, P.2
-
32
-
-
84892734390
-
Pluripotent stem cells in regenerative medicine: challenges and recent progress
-
Tabar, V., Studer, L., Pluripotent stem cells in regenerative medicine: challenges and recent progress. Nat. Rev. Genet. 15 (2014), 82–92.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 82-92
-
-
Tabar, V.1
Studer, L.2
-
33
-
-
27644490228
-
SoxE factors function equivalently during neural crest and inner ear development and their activity is regulated by SUMOylation
-
Taylor, K.M., Labonne, C., SoxE factors function equivalently during neural crest and inner ear development and their activity is regulated by SUMOylation. Dev. Cell 9 (2005), 593–603.
-
(2005)
Dev. Cell
, vol.9
, pp. 593-603
-
-
Taylor, K.M.1
Labonne, C.2
-
34
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D.R., Pimentel, H., Salzberg, S.L., Rinn, J.L., Pachter, L., Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7 (2012), 562–578.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
35
-
-
0032570663
-
Regulation of the mouse cartilage-derived retinoic acid-sensitive protein gene by the transcription factor AP-2
-
Xie, W.F., Kondo, S., Sandell, L.J., Regulation of the mouse cartilage-derived retinoic acid-sensitive protein gene by the transcription factor AP-2. J. Biol. Chem. 273 (1998), 5026–5032.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 5026-5032
-
-
Xie, W.F.1
Kondo, S.2
Sandell, L.J.3
-
36
-
-
84975229970
-
Derivation of Diverse Hormone-Releasing Pituitary Cells from Human Pluripotent Stem Cells
-
Zimmer, B., Piao, J., Ramnarine, K., Tomishima, M.J., Tabar, V., Studer, L., Derivation of Diverse Hormone-Releasing Pituitary Cells from Human Pluripotent Stem Cells. Stem Cell Reports 6 (2016), 858–872.
-
(2016)
Stem Cell Reports
, vol.6
, pp. 858-872
-
-
Zimmer, B.1
Piao, J.2
Ramnarine, K.3
Tomishima, M.J.4
Tabar, V.5
Studer, L.6
|