-
1
-
-
84887433048
-
Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations
-
PMID: 23742949
-
Bashford-Rogers RJ, Palser AL, Huntly BJ, Rance R, Vassiliou GS, Follows GA, Kellam P. 2013. Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations. Genome Research 23:1874-1884. DOI: 10.1101/gr.154815.113, PMID: 23742949
-
(2013)
Genome Research
, vol.23
, pp. 1874-1884
-
-
Bashford-Rogers, R.J.1
Palser, A.L.2
Huntly, B.J.3
Rance, R.4
Vassiliou, G.S.5
Follows, G.A.6
Kellam, P.7
-
2
-
-
79751537038
-
The whole-organism heavy chain B cell repertoire from zebrafish self-organizes into distinct network features
-
PMID: 21310065
-
Ben-Hamo R, Efroni S. 2011. The whole-organism heavy chain B cell repertoire from zebrafish self-organizes into distinct network features. BMC Systems Biology 5:27. DOI: 10.1186/1752-0509-5-27, PMID: 21310065
-
(2011)
BMC Systems Biology
, vol.5
, pp. 27
-
-
Ben-Hamo, R.1
Efroni, S.2
-
3
-
-
84897530472
-
Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling
-
PMID: 24510963
-
Britanova OV, Putintseva EV, Shugay M, Merzlyak EM, Turchaninova MA, Staroverov DB, Bolotin DA, Lukyanov S, Bogdanova EA, Mamedov IZ, Lebedev YB, Chudakov DM. 2014. Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling. The Journal of Immunology 192:2689-2698. DOI: 10.4049/jimmunol.1302064, PMID: 24510963
-
(2014)
The Journal of Immunology
, vol.192
, pp. 2689-2698
-
-
Britanova, O.V.1
Putintseva, E.V.2
Shugay, M.3
Merzlyak, E.M.4
Turchaninova, M.A.5
Staroverov, D.B.6
Bolotin, D.A.7
Lukyanov, S.8
Bogdanova, E.A.9
Mamedov, I.Z.10
Lebedev, Y.B.11
Chudakov, D.M.12
-
4
-
-
0030861370
-
Cross-reactive memory T cells for Epstein-Barr virus augment the alloresponse to common human leukocyte antigens: Degenerate recognition of Major histocompatibility complex-bound peptide by T cells and its role in alloreactivity
-
PMID: 9247584
-
Burrows SR, Silins SL, Khanna R, Burrows JM, Rischmueller M, McCluskey J, Moss DJ. 1997. Cross-reactive memory T cells for Epstein-Barr virus augment the alloresponse to common human leukocyte antigens: degenerate recognition of Major histocompatibility complex-bound peptide by T cells and its role in alloreactivity. European Journal of Immunology 27:1726-1736. DOI: 10.1002/eji.1830270720, PMID: 9247584
-
(1997)
European Journal of Immunology
, vol.27
, pp. 1726-1736
-
-
Burrows, S.R.1
Silins, S.L.2
Khanna, R.3
Burrows, J.M.4
Rischmueller, M.5
McCluskey, J.6
Moss, D.J.7
-
5
-
-
85017590386
-
Sequence and structural analyses reveal distinct and highly diverse human CD8(+) TCR repertoires to immunodominant viral antigens
-
PMID: 28423320
-
Chen G, Yang X, Ko A, Sun X, Gao M, Zhang Y, Shi A, Mariuzza RA, Weng NP. 2017. Sequence and structural analyses reveal distinct and highly diverse human CD8(+) TCR repertoires to immunodominant viral antigens. Cell Reports 19:569-583. DOI: 10.1016/j.celrep.2017.03.072, PMID: 28423320
-
(2017)
Cell Reports
, vol.19
, pp. 569-583
-
-
Chen, G.1
Yang, X.2
Ko, A.3
Sun, X.4
Gao, M.5
Zhang, Y.6
Shi, A.7
Mariuzza, R.A.8
Weng, N.P.9
-
6
-
-
38449101120
-
Integration of biological networks and gene expression data using cytoscape
-
PMID: 17947979
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, et al. 2007. Integration of biological networks and gene expression data using cytoscape. Nature Protocols 2: 2366-2382. DOI: 10.1038/nprot.2007.324, PMID: 17947979
-
(2007)
Nature Protocols
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
more..
-
7
-
-
0026465564
-
The cognitive principle challenges clonal selection
-
PMID: 1476598
-
Cohen IR. 1992. The cognitive principle challenges clonal selection. Immunology Today 13:441-444. DOI: 10. 1016/0167-5699(92)90071-E, PMID: 1476598
-
(1992)
Immunology Today
, vol.13
, pp. 441-444
-
-
Cohen, I.R.1
-
10
-
-
43349094507
-
The igraph software package for complex network research
-
Csardi G, Nepusz T. 2006. The igraph software package for complex network research. Inter Journal, Complex Systems 1695.
-
(2006)
Inter Journal, Complex Systems
, pp. 1695
-
-
Csardi, G.1
Nepusz, T.2
-
11
-
-
0023720148
-
T-cell antigen receptor genes and T-cell recognition
-
PMID: 3043226
-
Davis MM, Bjorkman PJ. 1988. T-cell antigen receptor genes and T-cell recognition. Nature 334:395-402. DOI: 10.1038/334395a0, PMID: 3043226
-
(1988)
Nature
, vol.334
, pp. 395-402
-
-
Davis, M.M.1
Bjorkman, P.J.2
-
12
-
-
84903957216
-
Quantifying selection in immune receptor repertoires
-
PMID: 24941953
-
Elhanati Y, Murugan A, Callan CG, Mora T, Walczak AM. 2014. Quantifying selection in immune receptor repertoires. PNAS 111:9875-9880. DOI: 10.1073/pnas.1409572111, PMID: 24941953
-
(2014)
PNAS
, vol.111
, pp. 9875-9880
-
-
Elhanati, Y.1
Murugan, A.2
Callan, C.G.3
Mora, T.4
Walczak, A.M.5
-
13
-
-
84976568322
-
Next-Generation sequencing reveals restriction and clonotypic expansion of Treg cells in Juvenile Idiopathic Arthritis
-
PMID: 26815131
-
Henderson LA, Volpi S, Frugoni F, Janssen E, Kim S, Sundel RP, Dedeoglu F, Lo MS, Hazen MM, Beth Son M, Mathieu R, Zurakowski D, Yu N, Lebedeva T, Fuhlbrigge RC, Walter JE, Nee Lee Y, Nigrovic PA, Notarangelo LD. 2016. Next-Generation sequencing reveals restriction and clonotypic expansion of Treg cells in Juvenile Idiopathic Arthritis. Arthritis and Rheumatology 68:1758-1768. DOI: 10.1002/art.39606, PMID: 26815131
-
(2016)
Arthritis and Rheumatology
, vol.68
, pp. 1758-1768
-
-
Henderson, L.A.1
Volpi, S.2
Frugoni, F.3
Janssen, E.4
Kim, S.5
Sundel, R.P.6
Dedeoglu, F.7
Lo, M.S.8
Hazen, M.M.9
Beth Son, M.10
Mathieu, R.11
Zurakowski, D.12
Yu, N.13
Lebedeva, T.14
Fuhlbrigge, R.C.15
Walter, J.E.16
Nee Lee, Y.17
Nigrovic, P.A.18
Notarangelo, L.D.19
-
14
-
-
84949895433
-
Multiplex identification of Antigen-Specific T cell receptors using a combination of immune assays and immune receptor sequencing
-
PMID: 26509579
-
Klinger M, Pepin F, Wilkins J, Asbury T, Wittkop T, Zheng J, Moorhead M, Faham M. 2015. Multiplex identification of Antigen-Specific T cell receptors using a combination of immune assays and immune receptor sequencing. PLoS One 10:e0141561. DOI: 10.1371/journal.pone.0141561, PMID: 26509579
-
(2015)
Plos One
, vol.10
-
-
Klinger, M.1
Pepin, F.2
Wilkins, J.3
Asbury, T.4
Wittkop, T.5
Zheng, J.6
Moorhead, M.7
Faham, M.8
-
15
-
-
0001116877
-
Binary codes capable of correcting deletions, insertions, and reversals
-
Levenshtein VI. 1966. Binary codes capable of correcting deletions, insertions, and reversals. Soviet Physics Doklady 10:707-710.
-
(1966)
Soviet Physics Doklady
, vol.10
, pp. 707-710
-
-
Levenshtein, V.I.1
-
16
-
-
84907553718
-
T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity
-
PMID: 25024161
-
Madi A, Shifrut E, Reich-Zeliger S, Gal H, Best K, Ndifon W, Chain B, Cohen IR, Friedman N. 2014. T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity. Genome Research 24:1603-1612. DOI: 10.1101/gr.170753.113, PMID: 25024161
-
(2014)
Genome Research
, vol.24
, pp. 1603-1612
-
-
Madi, A.1
Shifrut, E.2
Reich-Zeliger, S.3
Gal, H.4
Best, K.5
Ndifon, W.6
Chain, B.7
Cohen, I.R.8
Friedman, N.9
-
17
-
-
34547662266
-
A public T cell clonotype within a heterogeneous autoreactive repertoire is dominant in driving EAE
-
PMID: 17627303
-
Menezes JS, van den Elzen P, Thornes J, Huffman D, Droin NM, Maverakis E, Sercarz EE. 2007. A public T cell clonotype within a heterogeneous autoreactive repertoire is dominant in driving EAE. Journal of Clinical Investigation 117:2176-2185. DOI: 10.1172/JCI28277, PMID: 17627303
-
(2007)
Journal of Clinical Investigation
, vol.117
, pp. 2176-2185
-
-
Menezes, J.S.1
Van Den Elzen, P.2
Thornes, J.3
Huffman, D.4
Droin, N.M.5
Maverakis, E.6
Sercarz, E.E.7
-
18
-
-
79952816254
-
Bias in the αβ T-cell repertoire: Implications for disease pathogenesis and vaccination
-
PMID: 21301479
-
Miles JJ, Douek DC, Price DA. 2011. Bias in the αβ T-cell repertoire: implications for disease pathogenesis and vaccination. Immunology and Cell Biology 89:375-387. DOI: 10.1038/icb.2010.139, PMID: 21301479
-
(2011)
Immunology and Cell Biology
, vol.89
, pp. 375-387
-
-
Miles, J.J.1
Douek, D.C.2
Price, D.A.3
-
19
-
-
70349866687
-
ShortRead: A bioconductor package for input, quality assessment and exploration of high-throughput sequence data
-
PMID: 19654119
-
Morgan M, Anders S, Lawrence M, Aboyoun P, Pagès H, Gentleman R. 2009. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics 25: 2607-2608. DOI: 10.1093/bioinformatics/btp450, PMID: 19654119
-
(2009)
Bioinformatics
, vol.25
, pp. 2607-2608
-
-
Morgan, M.1
Ers, S.2
Lawrence, M.3
Aboyoun, P.4
Pagès, H.5
Gentleman, R.6
-
20
-
-
0025992233
-
Extensive conservation of alpha and beta chains of the human T-cell antigen receptor recognizing HLA-A2 and influenza A matrix peptide
-
PMID: 1833769
-
Moss PA, Moots RJ, Rosenberg WM, Rowland-Jones SJ, Bodmer HC, McMichael AJ, Bell JI. 1991. Extensive conservation of alpha and beta chains of the human T-cell antigen receptor recognizing HLA-A2 and influenza A matrix peptide. PNAS 88:8987-8990. DOI: 10.1073/pnas.88.20.8987, PMID: 1833769
-
(1991)
PNAS
, vol.88
, pp. 8987-8990
-
-
Moss, P.A.1
Moots, R.J.2
Rosenberg, W.M.3
Rowland-Jones, S.J.4
Bodmer, H.C.5
McMichael, A.J.6
Bell, J.I.7
-
21
-
-
71849094775
-
Persistence of lung CD8 T cell oligoclonal expansions upon smoking cessation in a mouse model of cigarette smoke-induced emphysema
-
PMID: 19017996
-
Motz GT, Eppert BL, Sun G, Wesselkamper SC, Linke MJ, Deka R, Borchers MT. 2008. Persistence of lung CD8 T cell oligoclonal expansions upon smoking cessation in a mouse model of cigarette smoke-induced emphysema. The Journal of Immunology 181:8036-8043. DOI: 10.4049/jimmunol.181.11.8036, PMID: 19017996
-
(2008)
The Journal of Immunology
, vol.181
, pp. 8036-8043
-
-
Motz, G.T.1
Eppert, B.L.2
Sun, G.3
Wesselkamper, S.C.4
Linke, M.J.5
Deka, R.6
Borchers, M.T.7
-
22
-
-
84867095375
-
Statistical inference of the generation probability of T-cell receptors from sequence repertoires
-
PMID: 22 988065
-
Murugan A, Mora T, Walczak AM, Callan CG. 2012. Statistical inference of the generation probability of T-cell receptors from sequence repertoires. PNAS 109:16161-16166. DOI: 10.1073/pnas.1212755109, PMID: 22 988065
-
(2012)
PNAS
, vol.109
, pp. 16161-16166
-
-
Murugan, A.1
Mora, T.2
Walczak, A.M.3
Callan, C.G.4
-
23
-
-
0025731505
-
T cell receptor V gene usage of islet beta cell-reactive T cells is not restricted in non-obese diabetic mice
-
PMID: 1902501
-
Nakano N, Kikutani H, Nishimoto H, Kishimoto T. 1991. T cell receptor V gene usage of islet beta cell-reactive T cells is not restricted in non-obese diabetic mice. Journal of Experimental Medicine 173:1091-1097. DOI: 10. 1084/jem.173.5.1091, PMID: 1902501
-
(1991)
Journal of Experimental Medicine
, vol.173
, pp. 1091-1097
-
-
Nakano, N.1
Kikutani, H.2
Nishimoto, H.3
Kishimoto, T.4
-
24
-
-
84866842507
-
Chromatin conformation governs T-cell receptor jb gene segment usage
-
PMID: 22984176
-
Ndifon W, Gal H, Shifrut E, Aharoni R, Yissachar N, Waysbort N, Reich-Zeliger S, Arnon R, Friedman N. 2012. Chromatin conformation governs T-cell receptor jb gene segment usage. PNAS 109:15865-15870. DOI: 10. 1073/pnas.1203916109, PMID: 22984176
-
(2012)
PNAS
, vol.109
, pp. 15865-15870
-
-
Ndifon, W.1
Gal, H.2
Shifrut, E.3
Aharoni, R.4
Yissachar, N.5
Waysbort, N.6
Reich-Zeliger, S.7
Arnon, R.8
Friedman, N.9
-
25
-
-
0027523064
-
Characterization of the T cell receptor repertoire causing collagen arthritis in mice
-
PMID: 8381155
-
Osman GE, Toda M, Kanagawa O, Hood LE. 1993. Characterization of the T cell receptor repertoire causing collagen arthritis in mice. Journal of Experimental Medicine 177:387-395. DOI: 10.1084/jem.177.2.387, PMID: 8381155
-
(1993)
Journal of Experimental Medicine
, vol.177
, pp. 387-395
-
-
Osman, G.E.1
Toda, M.2
Kanagawa, O.3
Hood, L.E.4
-
27
-
-
84899750907
-
CTLA4 blockade broadens the peripheral T-cell receptor repertoire
-
PMID: 24583799
-
Robert L, Tsoi J, Wang X, Emerson R, Homet B, Chodon T, Mok S, Huang RR, Cochran AJ, Comin-Anduix B, Koya RC, Graeber TG, Robins H, Ribas A. 2014. CTLA4 blockade broadens the peripheral T-cell receptor repertoire. Clinical Cancer Research 20:2424-2432. DOI: 10.1158/1078-0432.CCR-13-2648, PMID: 24583799
-
(2014)
Clinical Cancer Research
, vol.20
, pp. 2424-2432
-
-
Robert, L.1
Tsoi, J.2
Wang, X.3
Emerson, R.4
Homet, B.5
Chodon, T.6
Mok, S.7
Huang, R.R.8
Cochran, A.J.9
Comin-Anduix, B.10
Koya, R.C.11
Graeber, T.G.12
Robins, H.13
Ribas, A.14
-
28
-
-
77956460339
-
Overlap and effective size of the human CD8+ T cell receptor repertoire
-
47ra64, PMID: 20811043
-
Robins HS, Srivastava SK, Campregher PV, Turtle CJ, Andriesen J, Riddell SR, Carlson CS, Warren EH. 2010. Overlap and effective size of the human CD8+ T cell receptor repertoire. Science Translational Medicine 2: 47ra64. DOI: 10.1126/scitranslmed.3001442, PMID: 20811043
-
(2010)
Science Translational Medicine
, vol.2
-
-
Robins, H.S.1
Srivastava, S.K.2
Campregher, P.V.3
Turtle, C.J.4
Riesen, J.5
Riddell, S.R.6
Carlson, C.S.7
Warren, E.H.8
-
29
-
-
84863899032
-
The T-cell receptor repertoire of tumor-infiltrating regulatory T lymphocytes is skewed toward public sequences
-
PMID: 22573714
-
Sainz-Perez A, Lim A, Lemercier B, Leclerc C. 2012. The T-cell receptor repertoire of tumor-infiltrating regulatory T lymphocytes is skewed toward public sequences. Cancer Research 72:3557-3569. DOI: 10.1158/0008-5472. CAN-12-0277, PMID: 22573714
-
(2012)
Cancer Research
, vol.72
, pp. 3557-3569
-
-
Sainz-Perez, A.1
Lim, A.2
Lemercier, B.3
Leclerc, C.4
-
30
-
-
84869054051
-
A travel guide to Cytoscape plugins
-
PMID: 23132118
-
Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T. 2012. A travel guide to Cytoscape plugins. Nature Methods 9:1069-1076. DOI: 10.1038/nmeth.2212, PMID: 23132118
-
(2012)
Nature Methods
, vol.9
, pp. 1069-1076
-
-
Saito, R.1
Smoot, M.E.2
Ono, K.3
Ruscheinski, J.4
Wang, P.L.5
Lotia, S.6
Pico, A.R.7
Bader, G.D.8
Ideker, T.9
-
31
-
-
65249118742
-
Identification of a public CDR3 motif and a biased utilization of T-cell receptor V beta and J beta chains in HLA-A2/Melan-A-specific T-cell clonotypes of melanoma patients
-
PMID: 19317896
-
Serana F, Sottini A, Caimi L, Palermo B, Natali PG, Nisticò P, Imberti L. 2009. Identification of a public CDR3 motif and a biased utilization of T-cell receptor V beta and J beta chains in HLA-A2/Melan-A-specific T-cell clonotypes of melanoma patients. Journal of Translational Medicine 7:21. DOI: 10.1186/1479-5876-7-21, PMID: 19317896
-
(2009)
Journal of Translational Medicine
, vol.7
, pp. 21
-
-
Serana, F.1
Sottini, A.2
Caimi, L.3
Palermo, B.4
Natali, P.G.5
Nisticò, P.6
Imberti, L.7
-
32
-
-
84890382431
-
CD4(+) T Cell-Receptor repertoire diversity is compromised in the spleen but not in the bone marrow of Aged mice due to private and sporadic clonal expansions
-
PMID: 24312094
-
Shifrut E, Baruch K, Gal H, Ndifon W, Deczkowska A, Schwartz M, Friedman N. 2013. CD4(+) T Cell-Receptor repertoire diversity is compromised in the spleen but not in the bone marrow of Aged mice due to private and sporadic clonal expansions. Frontiers in Immunology 4:379. DOI: 10.3389/fimmu.2013.00379, PMID: 24312094
-
(2013)
Frontiers in Immunology
, vol.4
, pp. 379
-
-
Shifrut, E.1
Baruch, K.2
Gal, H.3
Ndifon, W.4
Deczkowska, A.5
Schwartz, M.6
Friedman, N.7
-
33
-
-
79551587720
-
Cytoscape 2.8: New features for data integration and network visualization
-
PMID: 21149340
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. 2011. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27:431-432. DOI: 10.1093/bioinformatics/btq675, PMID: 21149340
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
34
-
-
85018414848
-
Specificity, Privacy, and degeneracy in the CD4 T cell receptor repertoire following immunization
-
PMID: 28450864
-
Sun Y, Best K, Cinelli M, Heather JM, Reich-Zeliger S, Shifrut E, Friedman N, Shawe-Taylor J, Chain B. 2017. Specificity, Privacy, and degeneracy in the CD4 T cell receptor repertoire following immunization. Frontiers in Immunology 8:430. DOI: 10.3389/fimmu.2017.00430, PMID: 28450864
-
(2017)
Frontiers in Immunology
, vol.8
, pp. 430
-
-
Sun, Y.1
Best, K.2
Cinelli, M.3
Heather, J.M.4
Reich-Zeliger, S.5
Shifrut, E.6
Friedman, N.7
Shawe-Taylor, J.8
Chain, B.9
-
35
-
-
84873184482
-
Ecological analysis of antigen-specific CTL repertoires defines the relationship between naive and immune T-cell populations
-
PMID: 23319654
-
Thomas PG, Handel A, Doherty PC, La Gruta NL. 2013. Ecological analysis of antigen-specific CTL repertoires defines the relationship between naive and immune T-cell populations. PNAS 110:1839-1844. DOI: 10.1073/pnas.1222149110, PMID: 23319654
-
(2013)
PNAS
, vol.110
, pp. 1839-1844
-
-
Thomas, P.G.1
Handel, A.2
Doherty, P.C.3
La Gruta, N.L.4
-
36
-
-
85029215405
-
McPAS-TCR: A manually-curated catalogue of pathology-associated T cell receptor sequences
-
btx286, PMID: 28481982
-
Tickotsky N, Sagiv T, Prilusky J, Shifrut E, Friedman N. 2017. McPAS-TCR: A manually-curated catalogue of pathology-associated T cell receptor sequences. Bioinformatics:btx286. DOI: 10.1093/bioinformatics/btx286, PMID: 28481982
-
(2017)
Bioinformatics
-
-
Tickotsky, N.1
Sagiv, T.2
Prilusky, J.3
Shifrut, E.4
Friedman, N.5
-
37
-
-
84856291875
-
β T cell receptors that do not undergo Major histocompatibility complex-specific thymic selection possess antibody-like recognition specificities
-
PMID: 22209676
-
Tikhonova AN, Van Laethem F, Hanada K, Lu J, Pobezinsky LA, Hong C, Guinter TI, Jeurling SK, Bernhardt G, Park JH, Yang JC, Sun PD, Singer A. 2012. β T cell receptors that do not undergo Major histocompatibility complex-specific thymic selection possess antibody-like recognition specificities. Immunity 36:79-91. DOI: 10. 1016/j.immuni.2011.11.013, PMID: 22209676
-
(2012)
Immunity
, vol.36
, pp. 79-91
-
-
Tikhonova, A.N.1
Van Laethem, F.2
Hanada, K.3
Lu, J.4
Pobezinsky, L.A.5
Hong, C.6
Guinter, T.I.7
Jeurling, S.K.8
Bernhardt, G.9
Park, J.H.10
Yang, J.C.11
Sun, P.D.12
Singer, A.13
-
38
-
-
0033035367
-
A shared TCR CDR3 sequence in NOD mouse autoimmune diabetes
-
PMID: 10360969
-
Tikochinski Y, Elias D, Steeg C, Marcus H, Kantorowitz M, Reshef T, Ablamunits V, Cohen IR, Friedmann A. 1999. A shared TCR CDR3 sequence in NOD mouse autoimmune diabetes. International Immunology 11:951-956. DOI: 10.1093/intimm/11.6.951, PMID: 10360969
-
(1999)
International Immunology
, vol.11
, pp. 951-956
-
-
Tikochinski, Y.1
Elias, D.2
Steeg, C.3
Marcus, H.4
Kantorowitz, M.5
Reshef, T.6
Ablamunits, V.7
Cohen, I.R.8
Friedmann, A.9
-
39
-
-
84905465338
-
The stringdist package for approximate string matching
-
van der Loo M. 2014. The stringdist package for approximate string matching. The R Journal 6:111-122.
-
(2014)
The R Journal
, vol.6
, pp. 111-122
-
-
Van Der Loo, M.1
-
40
-
-
36048942337
-
Deletion of CD4 and CD8 coreceptors permits generation of alphabetaT cells that recognize antigens independently of the MHC
-
PMID: 18023370
-
Van Laethem F, Sarafova SD, Park JH, Tai X, Pobezinsky L, Guinter TI, Adoro S, Adams A, Sharrow SO, Feigenbaum L, Singer A. 2007. Deletion of CD4 and CD8 coreceptors permits generation of alphabetaT cells that recognize antigens independently of the MHC. Immunity 27:735-750. DOI: 10.1016/j.immuni.2007.10.007, PMID: 18023370
-
(2007)
Immunity
, vol.27
, pp. 735-750
-
-
Van Laethem, F.1
Sarafova, S.D.2
Park, J.H.3
Tai, X.4
Pobezinsky, L.5
Guinter, T.I.6
Adoro, S.7
Adams, A.8
Sharrow, S.O.9
Feigenbaum, L.10
Singer, A.11
-
41
-
-
84884248064
-
Lck availability during thymic selection determines the recognition specificity of the T cell repertoire
-
PMID: 24034254
-
Van Laethem F, Tikhonova AN, Pobezinsky LA, Tai X, Kimura MY, Le Saout C, Guinter TI, Adams A, Sharrow SO, Bernhardt G, Feigenbaum L, Singer A. 2013. Lck availability during thymic selection determines the recognition specificity of the T cell repertoire. Cell 154:1326-1341. DOI: 10.1016/j.cell.2013.08.009, PMID: 24034254
-
(2013)
Cell
, vol.154
, pp. 1326-1341
-
-
Van Laethem, F.1
Tikhonova, A.N.2
Pobezinsky, L.A.3
Tai, X.4
Kimura, M.Y.5
Le Saout, C.6
Guinter, T.I.7
Adams, A.8
Sharrow, S.O.9
Bernhardt, G.10
Feigenbaum, L.11
Singer, A.12
-
42
-
-
33845508205
-
Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination
-
PMID: 17130450
-
Venturi V, Kedzierska K, Price DA, Doherty PC, Douek DC, Turner SJ, Davenport MP. 2006. Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination. PNAS 103:18691-18696. DOI: 10.1073/pnas.0608907103, PMID: 17130450
-
(2006)
PNAS
, vol.103
, pp. 18691-18696
-
-
Venturi, V.1
Kedzierska, K.2
Price, D.A.3
Doherty, P.C.4
Douek, D.C.5
Turner, S.J.6
Davenport, M.P.7
-
43
-
-
40049103901
-
The molecular basis for public T-cell responses?
-
PMID: 18301425
-
Venturi V, Price DA, Douek DC, Davenport MP. 2008. The molecular basis for public T-cell responses? Nature Reviews Immunology 8:231-238. DOI: 10.1038/nri2260, PMID: 18301425
-
(2008)
Nature Reviews Immunology
, vol.8
, pp. 231-238
-
-
Venturi, V.1
Price, D.A.2
Douek, D.C.3
Davenport, M.P.4
-
45
-
-
84855497162
-
A single autoimmune T cell receptor recognizes more than a million different peptides
-
PMID: 22102287
-
Wooldridge L, Ekeruche-Makinde J, van den Berg HA, Skowera A, Miles JJ, Tan MP, Dolton G, Clement M, Llewellyn-Lacey S, Price DA, Peakman M, Sewell AK. 2012. A single autoimmune T cell receptor recognizes more than a million different peptides. Journal of Biological Chemistry 287:1168-1177. DOI: 10.1074/jbc.M111. 289488, PMID: 22102287
-
(2012)
Journal of Biological Chemistry
, vol.287
, pp. 1168-1177
-
-
Wooldridge, L.1
Ekeruche-Makinde, J.2
Van Den Berg, H.A.3
Skowera, A.4
Miles, J.J.5
Tan, M.P.6
Dolton, G.7
Clement, M.8
Llewellyn-Lacey, S.9
Price, D.A.10
Peakman, M.11
Sewell, A.K.12
-
47
-
-
84886003861
-
Structure-Based, rational design of T Cell Receptors
-
PMID: 24062738
-
Zoete V, Irving M, Ferber M, Cuendet MA, Michielin O. 2013. Structure-Based, rational design of T Cell Receptors. Frontiers in Immunology 4:268. DOI: 10.3389/fimmu.2013.00268, PMID: 24062738
-
(2013)
Frontiers in Immunology
, vol.4
, pp. 268
-
-
Zoete, V.1
Irving, M.2
Ferber, M.3
Cuendet, M.A.4
Michielin, O.5
|