-
1
-
-
0003996006
-
The Clonal Selection Theory of Acquired Immunity
-
Burnet FM. The Clonal Selection Theory of Acquired Immunity. Nashville: Vanderbilt University Press (1959). doi: 10.5962/bhl.title.8281
-
(1959)
Nashville: Vanderbilt University Press
-
-
Burnet, F.M.1
-
2
-
-
4444329364
-
Visualizing the first 50 hr of the primary immune response to a soluble antigen
-
Catron DM, Itano AA, Pape KA, Mueller DL, Jenkins MK. Visualizing the first 50 hr of the primary immune response to a soluble antigen. Immunity (2004) 21:341-7. doi:10.1016/j.immuni.2004.08.007
-
(2004)
Immunity
, vol.21
, pp. 341-347
-
-
Catron, D.M.1
Itano, A.A.2
Pape, K.A.3
Mueller, D.L.4
Jenkins, M.K.5
-
3
-
-
33645275372
-
Naive and memory CD4+ T cell survival controlled by clonal abundance
-
Hataye J, Moon JJ, Khoruts A, Reilly C, Jenkins MK. Naive and memory CD4+ T cell survival controlled by clonal abundance. Science (2006) 312:114-6. doi:10.1126/science.1124228
-
(2006)
Science
, vol.312
, pp. 114-116
-
-
Hataye, J.1
Moon, J.J.2
Khoruts, A.3
Reilly, C.4
Jenkins, M.K.5
-
4
-
-
84860346184
-
The role of naive T cell precursor frequency and recruitment in dictating immune response magnitude
-
Jenkins MK, Moon JJ. The role of naive T cell precursor frequency and recruitment in dictating immune response magnitude. J Immunol (2012) 188:4135-40. doi:10.4049/jimmunol.1102661
-
(2012)
J Immunol
, vol.188
, pp. 4135-4140
-
-
Jenkins, M.K.1
Moon, J.J.2
-
5
-
-
84873710640
-
In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping
-
Reuther S, Schmetzer H, Schuster FR, Krell P, Grabrucker C, Liepert A, et al. In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping. Clin Exp Med (2013) 13:29-48. doi:10.1007/s10238-012-0180-y
-
(2013)
Clin Exp Med
, vol.13
, pp. 29-48
-
-
Reuther, S.1
Schmetzer, H.2
Schuster, F.R.3
Krell, P.4
Grabrucker, C.5
Liepert, A.6
-
6
-
-
84876073850
-
T cell receptor variable beta gene repertoire in liver and peripheral blood lymphocytes of chronically hepatitis C virus-infected patients with and without mixed cryoglobulinaemia
-
Russi S, Lauletta G, Serviddio G, Sansonno S, Conteduca V, Sansonno L, et al. T cell receptor variable beta gene repertoire in liver and peripheral blood lymphocytes of chronically hepatitis C virus-infected patients with and without mixed cryoglobulinaemia. Clin Exp Immunol (2013) 172:254-62. doi:10.1111/cei.12035
-
(2013)
Clin Exp Immunol
, vol.172
, pp. 254-262
-
-
Russi, S.1
Lauletta, G.2
Serviddio, G.3
Sansonno, S.4
Conteduca, V.5
Sansonno, L.6
-
7
-
-
84945466038
-
Paired TCRaβ analysis of virus-specific CD8(+) T cells exposes diversity in a previously defined "narrow" repertoire
-
Cukalac T, Kan W-T, Dash P, Guan J, Quinn KM, Gras S, et al. Paired TCRaβ analysis of virus-specific CD8(+) T cells exposes diversity in a previously defined "narrow" repertoire. Immunol Cell Biol (2015) 93:804-14. doi:10.1038/icb.2015.44
-
(2015)
Immunol Cell Biol
, vol.93
, pp. 804-814
-
-
Cukalac, T.1
Kan, W.-T.2
Dash, P.3
Guan, J.4
Quinn, K.M.5
Gras, S.6
-
8
-
-
34848912809
-
Tracking phenotypically and functionally distinct T cell subsets via T cell repertoire diversity
-
Kedzierska K, La Gruta NL, Stambas J, Turner SJ, Doherty PC. Tracking phenotypically and functionally distinct T cell subsets via T cell repertoire diversity. Mol Immunol (2008) 45:607-18. doi:10.1016/j.molimm.2006.05.017
-
(2008)
Mol Immunol
, vol.45
, pp. 607-618
-
-
Kedzierska, K.1
La Gruta, N.L.2
Stambas, J.3
Turner, S.J.4
Doherty, P.C.5
-
9
-
-
77956460339
-
Overlap and effective size of the human CD8+ T cell receptor repertoire
-
Robins HS, Srivastava SK, Campregher PV, Turtle CJ, Andriesen J, Riddell SR, et al. Overlap and effective size of the human CD8+ T cell receptor repertoire. Sci Transl Med (2010) 2:47ra64. doi:10.1126/scitranslmed.3001442
-
(2010)
Sci Transl Med
, vol.2
-
-
Robins, H.S.1
Srivastava, S.K.2
Campregher, P.V.3
Turtle, C.J.4
Andriesen, J.5
Riddell, S.R.6
-
10
-
-
77950541195
-
Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells
-
Robins HS, Campregher PV, Srivastava SK, Wacher A, Turtle CJ, Kahsai O, et al. Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. Blood (2009) 114:4099-107. doi:10.1182/blood-2009-04-217604
-
(2009)
Blood
, vol.114
, pp. 4099-4107
-
-
Robins, H.S.1
Campregher, P.V.2
Srivastava, S.K.3
Wacher, A.4
Turtle, C.J.5
Kahsai, O.6
-
11
-
-
84903398938
-
Quantification of HTLV-1 clonality and TCR diversity
-
Laydon DJ, Melamed A, Sim A, Gillet NA, Sim K, Darko S, et al. Quantification of HTLV-1 clonality and TCR diversity. PLoS Comput Biol (2014) 10:e1003646. doi:10.1371/journal.pcbi.1003646
-
(2014)
PLoS Comput Biol
, vol.10
-
-
Laydon, D.J.1
Melamed, A.2
Sim, A.3
Gillet, N.A.4
Sim, K.5
Darko, S.6
-
12
-
-
84934766625
-
A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
-
Greiff V, Bhat P, Cook SC, Menzel U, Kang W, Reddy ST. A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status. Genome Med (2015) 7:49. doi:10.1186/s13073-015-0169-8
-
(2015)
Genome Med
, vol.7
, pp. 49
-
-
Greiff, V.1
Bhat, P.2
Cook, S.C.3
Menzel, U.4
Kang, W.5
Reddy, S.T.6
-
13
-
-
84903957216
-
Quantifying selection in immune receptor repertoires
-
Elhanati Y, Murugan A, Callan CG, Mora T, Walczak AM. Quantifying selection in immune receptor repertoires. Proc Natl Acad Sci U S A (2014) 111:9875-80. doi:10.1073/pnas.1409572111
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 9875-9880
-
-
Elhanati, Y.1
Murugan, A.2
Callan, C.G.3
Mora, T.4
Walczak, A.M.5
-
14
-
-
84866842507
-
Chromatin conformation governs T-cell receptor Jß gene segment usage
-
Ndifon W, Gal H, Shifrut E, Aharoni R, Yissachar N, Waysbort N, et al. Chromatin conformation governs T-cell receptor Jß gene segment usage. Proc Natl Acad Sci U S A (2012) 109:15865-70. doi:10.1073/pnas.1203916109
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 15865-15870
-
-
Ndifon, W.1
Gal, H.2
Shifrut, E.3
Aharoni, R.4
Yissachar, N.5
Waysbort, N.6
-
15
-
-
84907553718
-
T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity
-
Madi A, Shifrut E, Reich-Zeliger S, Gal H, Best K, Ndifon W, et al. T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity. Genome Res (2014) 24:1603-12. doi:10.1101/gr.170753.113
-
(2014)
Genome Res
, vol.24
, pp. 1603-1612
-
-
Madi, A.1
Shifrut, E.2
Reich-Zeliger, S.3
Gal, H.4
Best, K.5
Ndifon, W.6
-
16
-
-
84911404755
-
Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence
-
Thomas N, Best K, Cinelli M, Reich-Zeliger S, Gal H, Shifrut E, et al. Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence. Bioinformatics (2014) 30:1-8. doi:10.1093/bioinformatics/btu523
-
(2014)
Bioinformatics
, vol.30
, pp. 1-8
-
-
Thomas, N.1
Best, K.2
Cinelli, M.3
Reich-Zeliger, S.4
Gal, H.5
Shifrut, E.6
-
18
-
-
0028952299
-
The injured cell: the role of the dendritic cell system as a sentinel receptor pathway
-
Ibrahim MA, Chain BM, Katz DR. The injured cell: the role of the dendritic cell system as a sentinel receptor pathway. Immunol Today (1995) 16:181-6. doi:10.1016/0167-5699(95)80118-9
-
(1995)
Immunol Today
, vol.16
, pp. 181-186
-
-
Ibrahim, M.A.1
Chain, B.M.2
Katz, D.R.3
-
19
-
-
0024955886
-
Approaching the asymptote? Evolution and revolution in immunology
-
Janeway CA. Approaching the asymptote? Evolution and revolution in immunology. Cold Spring Harb Symp Quant Biol (1989) 54(Pt 1):1-13. doi:10.1101/SQB.1989.054.01.003
-
(1989)
Cold Spring Harb Symp Quant Biol
, vol.54
, pp. 1-13
-
-
Janeway, C.A.1
-
20
-
-
0036161257
-
Linear programming boosting via column generation
-
Demiriz A, Bennett K, Shawe-Taylor J. Linear programming boosting via column generation. Mach Learn (2002) 46:225-54. doi:10.1023/A:1012470815092
-
(2002)
Mach Learn
, vol.46
, pp. 225-254
-
-
Demiriz, A.1
Bennett, K.2
Shawe-Taylor, J.3
-
21
-
-
34047138318
-
Combining SVMs with various feature selection strategies
-
Chen Y, Lin C. Combining SVMs with various feature selection strategies. Featur Extr (2006) 207:315-24. doi:10.1007/978-3-540-35488-8_13
-
(2006)
Featur Extr
, vol.207
, pp. 315-324
-
-
Chen, Y.1
Lin, C.2
-
22
-
-
0001001098
-
-
Advances in Neural Information Processing Systems. Cambridge MA: MIT Press
-
Weston J, Mukherjee S, Chapelle O, Pontil M, Poggio T. Feature Selection for SVMs. Advances in Neural Information Processing Systems. Vol. 13. Cambridge MA: MIT Press (2000). p. 668-74
-
(2000)
Feature Selection for SVMs
, vol.13
, pp. 668-674
-
-
Weston, J.1
Mukherjee, S.2
Chapelle, O.3
Pontil, M.4
Poggio, T.5
-
23
-
-
0027953701
-
Autoimmune diabetes induced by the beta-cell toxin ST. Immunity to the 60-kDa heat shock protein and to insulin
-
Elias D, Prigozin H, Polak N, Rapoport M, Lohse AW, Cohen IR. Autoimmune diabetes induced by the beta-cell toxin STZ. Immunity to the 60-kDa heat shock protein and to insulin. Diabetes (1994) 43:992-8. doi:10.2337/diab.43.8.992
-
(1994)
Diabetes
, vol.43
, pp. 992-998
-
-
Elias, D.1
Prigozin, H.2
Polak, N.3
Rapoport, M.4
Lohse, A.W.5
Cohen, I.R.6
-
25
-
-
84911429068
-
AliView: a fast and lightweight alignment viewer and editor for large datasets
-
Larsson A. AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics (2014) 30:3276-8. doi:10.1093/bioinformatics/btu531
-
(2014)
Bioinformatics
, vol.30
, pp. 3276-3278
-
-
Larsson, A.1
-
26
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 32:1792-7. doi:10.1093/nar/gkh340
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
27
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One (2010) 5:e9490. doi:10.1371/journal.pone.0009490
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
28
-
-
84861739093
-
ape 3.0: new tools for distance-based phylogenetics and evolutionary analysis in R
-
Popescu A-A, Huber KT, Paradis E. ape 3.0: new tools for distance-based phylogenetics and evolutionary analysis in R. Bioinformatics (2012) 28:1536-7. doi:10.1093/bioinformatics/bts184
-
(2012)
Bioinformatics
, vol.28
, pp. 1536-1537
-
-
Popescu, A.-A.1
Huber, K.T.2
Paradis, E.3
-
29
-
-
0141958258
-
Different dynamics of CD4+ and CD8+ T cell responses during and after acute lymphocytic choriomeningitis virus infection
-
De Boer RJ, Homann D, Perelson AS. Different dynamics of CD4+ and CD8+ T cell responses during and after acute lymphocytic choriomeningitis virus infection. J Immunol (2003) 171:3928-35. doi:10.4049/jimmunol.171.8.3928
-
(2003)
J Immunol
, vol.171
, pp. 3928-3935
-
-
De Boer, R.J.1
Homann, D.2
Perelson, A.S.3
-
30
-
-
33644679501
-
The proliferative response of CD4 T cells to steady-state CD8+ dendritic cells is restricted by post-activation death
-
Rizzitelli A, Hawkins E, Todd H, Hodgkin PD, Shortman K. The proliferative response of CD4 T cells to steady-state CD8+ dendritic cells is restricted by post-activation death. Int Immunol (2006) 18:415-23. doi:10.1093/intimm/dxh382
-
(2006)
Int Immunol
, vol.18
, pp. 415-423
-
-
Rizzitelli, A.1
Hawkins, E.2
Todd, H.3
Hodgkin, P.D.4
Shortman, K.5
-
31
-
-
84937719428
-
Inferring processes underlying B-cell repertoire diversity
-
Elhanati Y, Sethna Z, Marcou Q, Callan CG, Mora T, Walczak AM. Inferring processes underlying B-cell repertoire diversity. Philos Trans R Soc Lond B Biol Sci (2015) 370. doi:10.1098/rstb.2014.0243
-
(2015)
Philos Trans R Soc Lond B Biol Sci
, vol.370
-
-
Elhanati, Y.1
Sethna, Z.2
Marcou, Q.3
Callan, C.G.4
Mora, T.5
Walczak, A.M.6
-
32
-
-
84867095375
-
Statistical inference of the generation probability of T-cell receptors from sequence repertoires
-
Murugan A, Mora T, Walczak AM, Callan CG Jr. Statistical inference of the generation probability of T-cell receptors from sequence repertoires. Proc Natl Acad Sci U S A (2012) 109:16161-6. doi:10.1073/pnas.1212755109
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 16161-16166
-
-
Murugan, A.1
Mora, T.2
Walczak, A.M.3
Callan, C.G.4
-
33
-
-
78650937547
-
Paired analysis of TCRa and TCRβ chains at the single-cell level in mice
-
Dash P, McClaren JL, Oguin TH, Rothwell W, Todd B, Morris MY, et al. Paired analysis of TCRa and TCRβ chains at the single-cell level in mice. J Clin Invest (2011) 121:288-95. doi:10.1172/JCI44752
-
(2011)
J Clin Invest
, vol.121
, pp. 288-295
-
-
Dash, P.1
McClaren, J.L.2
Oguin, T.H.3
Rothwell, W.4
Todd, B.5
Morris, M.Y.6
-
34
-
-
80053137286
-
Specific T-cell activation in an unspecific T-cell repertoire
-
Van Den Berg HA, Molina-París C, Sewell AK. Specific T-cell activation in an unspecific T-cell repertoire. Sci Prog (2011) 94:245-64. doi:10.3184/003685011X13139280383942
-
(2011)
Sci Prog
, vol.94
, pp. 245-264
-
-
Van Den Berg, H.A.1
Molina-París, C.2
Sewell, A.K.3
-
35
-
-
55949095006
-
How the thymus designs antigen-specific and self-tolerant T cell receptor sequences
-
Kosmrlj A, Jha AK, Huseby ES, Kardar M, Chakraborty AK. How the thymus designs antigen-specific and self-tolerant T cell receptor sequences. Proc Natl Acad Sci U S A (2008) 105:16671-6. doi:10.1073/pnas.0808081105
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 16671-16676
-
-
Kosmrlj, A.1
Jha, A.K.2
Huseby, E.S.3
Kardar, M.4
Chakraborty, A.K.5
-
36
-
-
84899847547
-
Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information
-
Ovchinnikov S, Kamisetty H, Baker D. Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information. Elife (2014) 3:e02030. doi:10.7554/eLife.02030
-
(2014)
Elife
, vol.3
-
-
Ovchinnikov, S.1
Kamisetty, H.2
Baker, D.3
-
37
-
-
84869447010
-
Protein structure prediction from sequence variation
-
Marks DS, Hopf TA, Sander C. Protein structure prediction from sequence variation. Nat Biotechnol (2012) 30:1072-80. doi:10.1038/nbt.2419
-
(2012)
Nat Biotechnol
, vol.30
, pp. 1072-1080
-
-
Marks, D.S.1
Hopf, T.A.2
Sander, C.3
|