메뉴 건너뛰기




Volumn 9, Issue 11, 2012, Pages 1069-1076

A travel guide to Cytoscape plugins

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER INTERFACE; COMPUTER NETWORK; COMPUTER PROGRAM; COMPUTER TERMINAL; CYTOSCAPE; DATA STORAGE DEVICE; HUMAN COMPUTER INTERACTION; INFORMATION RETRIEVAL; MOLECULAR BIOLOGY; MOLECULAR GENETICS; PLUGIN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; REVIEW; SYSTEMS BIOLOGY;

EID: 84869054051     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.2212     Document Type: Review
Times cited : (1190)

References (65)
  • 1
    • 38449101120 scopus 로고    scopus 로고
    • Integration of biological networks and gene expression data using Cytoscape
    • Cline, M.S. et al. Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc. 2, 2366-2382 (2007).
    • (2007) Nat. Protoc , vol.2 , pp. 2366-2382
    • Cline, M.S.1
  • 5
    • 77956664073 scopus 로고    scopus 로고
    • The BioPAX community standard for pathway data sharing
    • Demir, E. et al. The BioPAX community standard for pathway data sharing. Nat. Biotechnol. 28, 935-942 (2010).
    • (2010) Nat. Biotechnol , vol.28 , pp. 935-942
    • Demir, E.1
  • 7
    • 78651328883 scopus 로고    scopus 로고
    • The BioGRID Interaction Database: 2011 update
    • Stark, C. et al. The BioGRID Interaction Database: 2011 update. Nucleic Acids Res. 39, D698-D704 (2011).
    • (2011) Nucleic Acids Res , vol.39
    • Stark, C.1
  • 8
    • 58049196842 scopus 로고    scopus 로고
    • Integrating and annotating the interactome using the MiMI plugin for cytoscape
    • Gao, J. et al. Integrating and annotating the interactome using the MiMI plugin for cytoscape. Bioinformatics 25, 137-138 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 137-138
    • Gao, J.1
  • 9
    • 77958500367 scopus 로고    scopus 로고
    • Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape
    • Pentchev, K., Ono, K., Herwig, R., Ideker, T. & Kamburov, A. Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape. Bioinformatics 26, 2796-2797 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2796-2797
    • Pentchev, K.1    Ono, K.2    Herwig, R.3    Ideker, T.4    Kamburov, A.5
  • 10
    • 34548792342 scopus 로고    scopus 로고
    • APID2NET: Unified interactome graphic analyzer
    • DOI 10.1093/bioinformatics/btm373
    • Hernandez-Toro, J., Prieto, C. & De las Rivas, J. APID2NET: unified interactome graphic analyzer. Bioinformatics 23, 2495-2497 (2007). (Pubitemid 47423852)
    • (2007) Bioinformatics , vol.23 , Issue.18 , pp. 2495-2497
    • Hernandez-Toro, J.1    Prieto, C.2    De Las Rivas, J.3
  • 11
    • 79959846617 scopus 로고    scopus 로고
    • PSICQUIC and PSISCORE: Accessing and scoring molecular interactions
    • Aranda, B. et al. PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat. Methods 8, 528-529 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 528-529
    • Aranda, B.1
  • 12
    • 77951969442 scopus 로고    scopus 로고
    • Metscape: A Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
    • Gao, J. et al. Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks. Bioinformatics 26, 971-973 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 971-973
    • Gao, J.1
  • 13
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M. & Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000). (Pubitemid 30047706)
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 14
    • 34548860112 scopus 로고    scopus 로고
    • The Edinburgh human metabolic network reconstruction and its functional analysis
    • Ma, H. et al. The Edinburgh human metabolic network reconstruction and its functional analysis. Mol. Syst. Biol. 3, 135 (2007).
    • (2007) Mol. Syst. Biol , vol.3 , pp. 135
    • Ma, H.1
  • 15
    • 48349105261 scopus 로고    scopus 로고
    • WikiPathways: Pathway editing for the people
    • Pico, A.R. et al. WikiPathways: pathway editing for the people. PLoS Biol. 6, e184 (2008).
    • (2008) PLoS Biol , vol.6
    • Pico, A.R.1
  • 16
    • 78651332286 scopus 로고    scopus 로고
    • Pathway Commons, a web resource for biological pathway data
    • Cerami, E.G. et al. Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res. 39, D685-D690 (2011).
    • (2011) Nucleic Acids Res , vol.39
    • Cerami, E.G.1
  • 17
    • 14644418425 scopus 로고    scopus 로고
    • An architecture for biological information extraction and representation
    • DOI 10.1093/bioinformatics/bti187
    • Vailaya, A. et al. An architecture for biological information extraction and representation. Bioinformatics 21, 430-438 (2005). (Pubitemid 40310228)
    • (2005) Bioinformatics , vol.21 , Issue.4 , pp. 430-438
    • Vailaya, A.1    Bluvas, P.2    Kincaid, R.3    Kuchinsky, A.4    Creech, M.5    Adler, A.6
  • 18
    • 13444266370 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    • DOI 10.1093/nar/gki033
    • Hamosh, A., Scott, A.F., Amberger, J.S., Bocchini, C.A. & McKusick, V.A. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 33, D514-D517 (2005). (Pubitemid 40207927)
    • (2005) Nucleic Acids Research , vol.33 , Issue.DATABASE ISS.
    • Hamosh, A.1    Scott, A.F.2    Amberger, J.S.3    Bocchini, C.A.4    McKusick, V.A.5
  • 19
    • 58149213932 scopus 로고    scopus 로고
    • Literature-curated protein interaction datasets
    • Cusick, M.E. et al. Literature-curated protein interaction datasets. Nat. Methods 6, 39-46 (2009).
    • (2009) Nat. Methods , vol.6 , pp. 39-46
    • Cusick, M.E.1
  • 20
    • 78149262301 scopus 로고    scopus 로고
    • GeneMANIA Cytoscape plugin: Fast gene function predictions on the desktop
    • Montojo, J. et al. GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics 26, 2927-2928 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2927-2928
    • Montojo, J.1
  • 21
    • 20744441547 scopus 로고    scopus 로고
    • Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
    • DOI 10.1093/bioinformatics/bti406
    • Lee, P.H. & Lee, D. Modularized learning of genetic interaction networks from biological annotations and mRNA expression data. Bioinformatics 21, 2739-2747 (2005). (Pubitemid 40852322)
    • (2005) Bioinformatics , vol.21 , Issue.11 , pp. 2739-2747
    • Lee, P.H.1    Lee, D.2
  • 22
    • 77956696072 scopus 로고    scopus 로고
    • High-throughput generation, optimization and analysis of genome-scale metabolic models
    • Henry, C.S. et al. High-throughput generation, optimization and analysis of genome-scale metabolic models. Nat. Biotechnol. 28, 977-982 (2010).
    • (2010) Nat. Biotechnol , vol.28 , pp. 977-982
    • Henry, C.S.1
  • 24
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H., Mason, S.P., Barabasi, A.L. & Oltvai, Z.N. Lethality and centrality in protein networks. Nature 411, 41-42 (2001).
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabasi, A.L.3    Oltvai, Z.N.4
  • 25
    • 77955721752 scopus 로고    scopus 로고
    • Glioblastoma-specific protein interaction network identifies PP1A and CSK21 as connecting molecules between cell cycle-associated genes
    • Ladha, J. et al. Glioblastoma-specific protein interaction network identifies PP1A and CSK21 as connecting molecules between cell cycle-associated genes. Cancer Res. 70, 6437-6447 (2010).
    • (2010) Cancer Res , vol.70 , pp. 6437-6447
    • Ladha, J.1
  • 26
    • 70350664654 scopus 로고    scopus 로고
    • Analyzing biological network parameters with CentiScaPe
    • Scardoni, G., Petterlini, M. & Laudanna, C. Analyzing biological network parameters with CentiScaPe. Bioinformatics 25, 2857-2859 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2857-2859
    • Scardoni, G.1    Petterlini, M.2    Laudanna, C.3
  • 27
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright, A.J., Van Dongen, S. & Ouzounis, C.A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30, 1575-1584 (2002). (Pubitemid 34679732)
    • (2002) Nucleic Acids Research , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 28
    • 33847172327 scopus 로고    scopus 로고
    • Clustering by passing messages between data points
    • DOI 10.1126/science.1136800
    • Frey, B.J. & Dueck, D. Clustering by passing messages between data points. Science 315, 972-976 (2007). (Pubitemid 46281181)
    • (2007) Science , vol.315 , Issue.5814 , pp. 972-976
    • Frey, B.J.1    Dueck, D.2
  • 29
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader, G.D. & Hogue, C.W. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4, 2 (2003).
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 30
    • 75149120711 scopus 로고    scopus 로고
    • NeMo: Network Module identification in Cytoscape
    • Rivera, C.G., Vakil, R. & Bader, J.S. NeMo: Network Module identification in Cytoscape. BMC Bioinformatics 11 (suppl. 1), S61 (2010).
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 1
    • Rivera, C.G.1    Vakil, R.2    Bader, J.S.3
  • 32
    • 80655132169 scopus 로고    scopus 로고
    • ClusterMaker: A multi-algorithm clustering plugin for Cytoscape
    • Morris, J.H. et al. clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics 12, 436 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 436
    • Morris, J.H.1
  • 33
    • 76749150479 scopus 로고    scopus 로고
    • Computational approaches for detecting protein complexes from protein interaction networks: A survey
    • Li, X., Wu, M., Kwoh, C.K. & Ng, S.K. Computational approaches for detecting protein complexes from protein interaction networks: a survey. BMC Genomics 11 (suppl. 1), S3 (2010).
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 1
    • Li, X.1    Wu, M.2    Kwoh, C.K.3    Ng, S.K.4
  • 34
    • 83655197907 scopus 로고    scopus 로고
    • Which clustering algorithm is better for predicting protein complexes?
    • Moschopoulos, C.N. et al. Which clustering algorithm is better for predicting protein complexes? BMC Res. Notes 4, 549 (2011).
    • (2011) BMC Res. Notes , vol.4 , pp. 549
    • Moschopoulos, C.N.1
  • 36
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
    • DOI 10.1093/bioinformatics/bti551
    • Maere, S., Heymans, K. & Kuiper, M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21, 3448-3449 (2005). (Pubitemid 41222459)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 38
    • 79953322205 scopus 로고    scopus 로고
    • PiNGO a Cytoscape plugin to find candidate genes in biological networks
    • Smoot, M., Ono, K., Ideker, T. & Maere, S. PiNGO: a Cytoscape plugin to find candidate genes in biological networks. Bioinformatics 27, 1030-1031 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 1030-1031
    • Smoot, M.1    Ono, K.2    Ideker, T.3    Maere, S.4
  • 39
    • 64549104807 scopus 로고    scopus 로고
    • ClueGO: A Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
    • Bindea, G. et al. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics 25, 1091-1093 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1091-1093
    • Bindea, G.1
  • 40
    • 78649775562 scopus 로고    scopus 로고
    • Enrichment map: A network-based method for gene-set enrichment visualization and interpretation
    • Merico, D., Isserlin, R., Stueker, O., Emili, A. & Bader, G.D. Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLoS ONE 5, e13984 (2010).
    • (2010) PLoS ONE , vol.5
    • Merico, D.1    Isserlin, R.2    Stueker, O.3    Emili, A.4    Bader, G.D.5
  • 41
    • 79953729967 scopus 로고    scopus 로고
    • WordCloud a Cytoscape plugin to create a visual semantic summary of networks
    • Oesper, L., Merico, D., Isserlin, R. & Bader, G.D. WordCloud: a Cytoscape plugin to create a visual semantic summary of networks. Source Code Biol. Med. 6, 7 (2011).
    • (2011) Source Code Biol. Med , vol.6 , pp. 7
    • Oesper, L.1    Merico, D.2    Isserlin, R.3    Bader, G.D.4
  • 42
    • 67849095416 scopus 로고    scopus 로고
    • Bio mart central portal-unified access to biological data
    • Haider, S. et al. BioMart Central Portal-unified access to biological data. Nucleic Acids Res. 37, W23-W27 (2009).
    • (2009) Nucleic Acids Res , vol.37
    • Haider, S.1
  • 43
    • 77349123063 scopus 로고    scopus 로고
    • The BridgeDb framework: Standardized access to gene, protein and metabolite identifier mapping services
    • van Iersel, M.P. et al. The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. BMC Bioinformatics 11, 5 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 5
    • Van Iersel, M.P.1
  • 44
    • 51749085111 scopus 로고    scopus 로고
    • VistaClara an expression browser plug-in for Cytoscape
    • Kincaid, R., Kuchinsky, A. & Creech, M. VistaClara: an expression browser plug-in for Cytoscape. Bioinformatics 24, 2112-2114 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 2112-2114
    • Kincaid, R.1    Kuchinsky, A.2    Creech, M.3
  • 45
    • 42549115221 scopus 로고    scopus 로고
    • NetAtlas: A cytoscape plugin to examine signaling networks based on tissue gene expression
    • Yang, L., Walker, J.R., Hogenesch, J.B. & Thomas, R.S. NetAtlas: a Cytoscape plugin to examine signaling networks based on tissue gene expression. In Silico Biol. 8, 47-52 (2008). (Pubitemid 351586889)
    • (2008) Silico Biology , vol.8 , Issue.1 , pp. 47-52
    • Yang, L.1    Walker, J.R.2    Hogenesch, J.B.3    Thomas, R.S.4
  • 46
    • 78449299426 scopus 로고    scopus 로고
    • OmicsAnalyzer: Cytoscape plug-in suite for modeling omics data
    • Xia, T., Hemert, J.V. & Dickerson, J.A. OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data. Bioinformatics 26, 2995-2996 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2995-2996
    • Xia, T.1    Hemert, J.V.2    Dickerson, J.A.3
  • 47
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker, T., Ozier, O., Schwikowski, B. & Siegel, A.F. Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18 (suppl. 1), S233-S240 (2002). (Pubitemid 41185658)
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 49
    • 35348891430 scopus 로고    scopus 로고
    • Network-based classification of breast cancer metastasis
    • Chuang, H.Y., Lee, E., Liu, Y.T., Lee, D. & Ideker, T. Network-based classification of breast cancer metastasis. Mol. Syst. Biol. 3, 140 (2007).
    • (2007) Mol. Syst. Biol , vol.3 , pp. 140
    • Chuang, H.Y.1    Lee, E.2    Liu, Y.T.3    Lee, D.4    Ideker, T.5
  • 50
    • 67649085724 scopus 로고    scopus 로고
    • BioQuali Cytoscape plugin: Analysing the global consistency of regulatory networks
    • Guziolowski, C., Bourde, A., Moreews, F. & Siegel, A. BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks. BMC Genomics 10, 244 (2009).
    • (2009) BMC Genomics , vol.10 , pp. 244
    • Guziolowski, C.1    Bourde, A.2    Moreews, F.3    Siegel, A.4
  • 51
    • 78649489546 scopus 로고    scopus 로고
    • Expr Essence-revealing the essence of differential experimental data in the context of an interaction/regulation net-work
    • Warsow, G. et al. ExprEssence-revealing the essence of differential experimental data in the context of an interaction/regulation net-work. BMC Syst. Biol. 4, 164 (2010).
    • (2010) BMC Syst. Biol , vol.4 , pp. 164
    • Warsow, G.1
  • 52
    • 77950491448 scopus 로고    scopus 로고
    • PerturbationAnalyzer: A tool for investigating the effects of concentration perturbation on protein interaction networks
    • Li, F. et al. PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks. Bioinformatics 26, 275-277 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 275-277
    • Li, F.1
  • 53
    • 77954250511 scopus 로고    scopus 로고
    • AltAnalyze and DomainGraph: Analyzing and visualizing exon expression data
    • Emig, D. et al. AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Res. 38, W755-W762 (2010).
    • (2010) Nucleic Acids Res , vol.38
    • Emig, D.1
  • 54
    • 80053369698 scopus 로고    scopus 로고
    • ICTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks
    • Wang, L., Khankhanian, P., Baranzini, S.E. & Mousavi, P. iCTNet: a Cytoscape plugin to produce and analyze integrative complex traits networks. BMC Bioinformatics 12, 380 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 380
    • Wang, L.1    Khankhanian, P.2    Baranzini, S.E.3    Mousavi, P.4
  • 55
    • 34248590125 scopus 로고    scopus 로고
    • CABIN: Collective analysis of biological interaction networks
    • DOI 10.1016/j.compbiolchem.2007.03.006, PII S1476927107000552
    • Singhal, M. & Domico, K. CABIN: collective analysis of biological interaction networks. Comput. Biol. Chem. 31, 222-225 (2007). (Pubitemid 46765208)
    • (2007) Computational Biology and Chemistry , vol.31 , Issue.3 , pp. 222-225
    • Singhal, M.1    Domico, K.2
  • 56
    • 53049108033 scopus 로고    scopus 로고
    • Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues
    • Petyuk, V.A. et al. Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues. J. Proteome Res. 7, 3114-3126 (2008).
    • (2008) J. Proteome Res , vol.7 , pp. 3114-3126
    • Petyuk, V.A.1
  • 57
    • 77954468404 scopus 로고    scopus 로고
    • MODEVO exploring modularity and evolution of protein interaction networks
    • Woźniak, M., Tiuryn, J. & Dutkowski, J. MODEVO: exploring modularity and evolution of protein interaction networks. Bioinformatics 26, 1790-1791 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 1790-1791
    • Woźniak, M.1    Tiuryn, J.2    Dutkowski, J.3
  • 58
    • 79952588432 scopus 로고    scopus 로고
    • OrthoNets: Simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms
    • Hao, Y. et al. OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms. Bioinformatics 27, 883-884 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 883-884
    • Hao, Y.1
  • 59
    • 80052412293 scopus 로고    scopus 로고
    • Assembling global maps of cellular function through integrative analysis of physical and genetic networks
    • Srivas, R. et al. Assembling global maps of cellular function through integrative analysis of physical and genetic networks. Nat. Protoc. 6, 1308-1323 (2011).
    • (2011) Nat. Protoc , vol.6 , pp. 1308-1323
    • Srivas, R.1
  • 60
    • 33646743767 scopus 로고    scopus 로고
    • The Gaggle: An open-source software system for integrating bioinformatics software and data sources
    • Shannon, P.T., Reiss, D.J., Bonneau, R. & Baliga, N.S. The Gaggle: an open-source software system for integrating bioinformatics software and data sources. BMC Bioinformatics 7, 176 (2006).
    • (2006) BMC Bioinformatics , vol.7 , pp. 176
    • Shannon, P.T.1    Reiss, D.J.2    Bonneau, R.3    Baliga, N.S.4
  • 61
    • 79952433272 scopus 로고    scopus 로고
    • Comprehensive cluster analysis with Transitivity Clustering
    • Wittkop, T. et al. Comprehensive cluster analysis with Transitivity Clustering. Nat. Protoc. 6, 285-295 (2011).
    • (2011) Nat. Protoc , vol.6 , pp. 285-295
    • Wittkop, T.1
  • 62
    • 34548740180 scopus 로고    scopus 로고
    • StructureViz: Linking cytoscape and ucsf chimera
    • DOI 10.1093/bioinformatics/btm329
    • Morris, J.H., Huang, C.C., Babbitt, P.C. & Ferrin, T.E. structureViz: linking Cytoscape and UCSF Chimera. Bioinformatics 23, 2345-2347 (2007). (Pubitemid 47423877)
    • (2007) Bioinformatics , vol.23 , Issue.17 , pp. 2345-2347
    • Morris, J.H.1    Huang, C.C.2    Babbitt, P.C.3    Ferrin, T.E.4
  • 63
  • 64
    • 52649086295 scopus 로고    scopus 로고
    • FERN-A Java framework for stochastic simulation and evaluation of reaction networks
    • Erhard, F., Friedel, C.C. & Zimmer, R. FERN-a Java framework for stochastic simulation and evaluation of reaction networks. BMC Bioinformatics 9, 356 (2008).
    • (2008) BMC Bioinformatics , vol.9 , pp. 356
    • Erhard, F.1    Friedel, C.C.2    Zimmer, R.3
  • 65
    • 70349948795 scopus 로고    scopus 로고
    • How to visually interpret biological data using networks
    • Merico, D., Gfeller, D. & Bader, G.D. How to visually interpret biological data using networks. Nat. Biotechnol. 27, 921-924 (2009).
    • (2009) Nat. Biotechnol , vol.27 , pp. 921-924
    • Merico, D.1    Gfeller, D.2    Bader, G.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.