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Volumn 8, Issue , 2017, Pages

Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand

(21)  Zhang, Xianjun a,b,c   Zhao, Fei a   Wu, Yiran a   Yang, Jun d   Han, Gye Won e   Zhao, Suwen a   Ishchenko, Andrii e   Ye, Lintao a,f   Lin, Xi a,b,c   Ding, Kang a,c   Dharmarajan, Venkatasubramanian g   Griffin, Patrick R g   Gati, Cornelius h   Nelson, Garrett i   Hunter, Mark S j   Hanson, Michael A k   Cherezov, Vadim e   Stevens, Raymond C a   Tan, Wenfu d   Tao, Houchao a   more..


Author keywords

[No Author keywords available]

Indexed keywords

G PROTEIN COUPLED RECEPTOR; SMOOTHENED PROTEIN; LIGAND; PROTEIN BINDING; RECOMBINANT PROTEIN; SMO PROTEIN, HUMAN; SONIC HEDGEHOG PROTEIN;

EID: 85019947839     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms15383     Document Type: Article
Times cited : (85)

References (52)
  • 1
    • 0345059765 scopus 로고    scopus 로고
    • Hedgehog signalling in cancer formation and maintenance
    • Pasca di Magliano, M. & Hebrok, M. Hedgehog signalling in cancer formation and maintenance. Nat. Rev. Cancer 3, 903-911 (2003).
    • (2003) Nat. Rev. Cancer , vol.3 , pp. 903-911
    • Pasca di Magliano, M.1    Hebrok, M.2
  • 2
    • 36049033946 scopus 로고    scopus 로고
    • Hedgehog regulates smoothened activity by inducing a conformational switch
    • Zhao, Y., Tong, C. & Jiang, J. Hedgehog regulates smoothened activity by inducing a conformational switch. Nature 450, 252-258 (2007).
    • (2007) Nature , vol.450 , pp. 252-258
    • Zhao, Y.1    Tong, C.2    Jiang, J.3
  • 3
    • 84878112106 scopus 로고    scopus 로고
    • Structure of the human smoothened receptor bound to an antitumour agent
    • Wang, C. et al. Structure of the human smoothened receptor bound to an antitumour agent. Nature 497, 338-343 (2013).
    • (2013) Nature , vol.497 , pp. 338-343
    • Wang, C.1
  • 4
    • 0035577854 scopus 로고    scopus 로고
    • Hedgehog signaling in animal development: Paradigms and principles
    • Ingham, P. W. & McMahon, A. P. Hedgehog signaling in animal development: paradigms and principles. Genes Dev. 15, 3059-3087 (2001).
    • (2001) Genes Dev. , vol.15 , pp. 3059-3087
    • Ingham, P.W.1    McMahon, A.P.2
  • 5
    • 84962816203 scopus 로고    scopus 로고
    • An essential role for Grk2 in Hedgehog signalling downstream of Smoothened
    • Zhao, Z. et al. An essential role for Grk2 in Hedgehog signalling downstream of Smoothened. EMBO Rep. 17, 739-752 (2016).
    • (2016) EMBO Rep. , vol.17 , pp. 739-752
    • Zhao, Z.1
  • 6
    • 84954318478 scopus 로고    scopus 로고
    • Hedgehog signaling pathway: A novel model and molecular mechanisms of signal transduction
    • Gorojankina, T. Hedgehog signaling pathway: a novel model and molecular mechanisms of signal transduction. Cell. Mol. Life Sci. 73, 1317-1332 (2016).
    • (2016) Cell. Mol. Life Sci. , vol.73 , pp. 1317-1332
    • Gorojankina, T.1
  • 7
    • 84883185477 scopus 로고    scopus 로고
    • Oxysterol binding to the extracellular domain of Smoothened in Hedgehog signaling
    • Nedelcu, D., Liu, J., Xu, Y., Jao, C. & Salic, A. Oxysterol binding to the extracellular domain of Smoothened in Hedgehog signaling. Nat. Chem. Biol. 9, 557-564 (2013).
    • (2013) Nat. Chem. Biol. , vol.9 , pp. 557-564
    • Nedelcu, D.1    Liu, J.2    Xu, Y.3    Jao, C.4    Salic, A.5
  • 8
    • 84904325982 scopus 로고    scopus 로고
    • Structural basis for Smoothened receptor modulation and chemoresistance to anticancer drugs
    • Wang, C. et al. Structural basis for Smoothened receptor modulation and chemoresistance to anticancer drugs. Nat. Commun. 5, 4355 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 4355
    • Wang, C.1
  • 9
    • 84894037590 scopus 로고    scopus 로고
    • Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography
    • Weierstall, U. et al. Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nat. Commun. 5, 3309 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 3309
    • Weierstall, U.1
  • 10
    • 84856098531 scopus 로고    scopus 로고
    • Oxysterols are allosteric activators of the oncoprotein Smoothened
    • Nachtergaele, S. et al. Oxysterols are allosteric activators of the oncoprotein Smoothened. Nat. Chem. Biol. 8, 211-220 (2012).
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 211-220
    • Nachtergaele, S.1
  • 11
    • 84883051342 scopus 로고    scopus 로고
    • Hedgehog pathway modulation by multiple lipid binding sites on the smoothened effector of signal response
    • Myers, B. R. et al. Hedgehog pathway modulation by multiple lipid binding sites on the smoothened effector of signal response. Dev. Cell 26, 346-357 (2013).
    • (2013) Dev. Cell , vol.26 , pp. 346-357
    • Myers, B.R.1
  • 12
    • 85001130088 scopus 로고    scopus 로고
    • Cholesterol activates the G-protein coupled receptor Smoothened to promote morphogenetic signaling
    • Luchetti, G. et al. Cholesterol activates the G-protein coupled receptor Smoothened to promote morphogenetic signaling. eLife 5, e20304 (2016).
    • (2016) ELife , vol.5 , pp. e20304
    • Luchetti, G.1
  • 13
    • 84890897900 scopus 로고    scopus 로고
    • Structural insights into the role of the Smoothened cysteine-rich domain in Hedgehog signalling
    • Rana, R. et al. Structural insights into the role of the Smoothened cysteine-rich domain in Hedgehog signalling. Nat. Commun. 4, 2965 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2965
    • Rana, R.1
  • 14
    • 40049099087 scopus 로고    scopus 로고
    • Microscale fluorescent thermal stability assay for membrane proteins
    • Alexandrov, A. I., Mileni, M., Chien, E. Y., Hanson, M. A. & Stevens, R. C. Microscale fluorescent thermal stability assay for membrane proteins. Structure 16, 351-359 (2008).
    • (2008) Structure , vol.16 , pp. 351-359
    • Alexandrov, A.I.1    Mileni, M.2    Chien, E.Y.3    Hanson, M.A.4    Stevens, R.C.5
  • 15
    • 85007271080 scopus 로고    scopus 로고
    • Design, Synthesis, and Pharmacological Evaluation of 2-(2,5-Dimethyl-5,6,7,8-tetrahydroquinolin-8-yl)-N-aryl Propanamides as Novel Smoothened (Smo) Antagonists
    • Liu, G. et al. Design, Synthesis, and Pharmacological Evaluation of 2-(2,5-Dimethyl-5,6,7,8-tetrahydroquinolin-8-yl)-N-aryl Propanamides as Novel Smoothened (Smo) Antagonists. J. Med. Chem. 59, 11050-11068 (2016).
    • (2016) J. Med. Chem. , vol.59 , pp. 11050-11068
    • Liu, G.1
  • 16
    • 84861984672 scopus 로고    scopus 로고
    • Fusion partner toolchest for the stabilization and crystallization of G protein-coupled receptors
    • Chun, E. et al. Fusion partner toolchest for the stabilization and crystallization of G protein-coupled receptors. Structure 20, 967-976 (2012).
    • (2012) Structure , vol.20 , pp. 967-976
    • Chun, E.1
  • 17
    • 84867059613 scopus 로고    scopus 로고
    • Hedgehog signaling inhibition by the small molecule smoothened inhibitor GDC-0449 in the bone forming prostate cancer xenograft MDA PCa 118b
    • Karlou, M. et al. Hedgehog signaling inhibition by the small molecule smoothened inhibitor GDC-0449 in the bone forming prostate cancer xenograft MDA PCa 118b. Prostate 72, 1638-1647 (2012).
    • (2012) Prostate , vol.72 , pp. 1638-1647
    • Karlou, M.1
  • 18
    • 36448995359 scopus 로고    scopus 로고
    • High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor
    • Cherezov, V. et al. High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 318, 1258-1265 (2007).
    • (2007) Science , vol.318 , pp. 1258-1265
    • Cherezov, V.1
  • 19
  • 20
    • 84982728617 scopus 로고    scopus 로고
    • Structural basis of Smoothened regulation by its extracellular domains
    • Byrne, E. F. et al. Structural basis of Smoothened regulation by its extracellular domains. Nature 535, 517-522 (2016).
    • (2016) Nature , vol.535 , pp. 517-522
    • Byrne, E.F.1
  • 21
    • 84983804225 scopus 로고    scopus 로고
    • Cellular cholesterol directly activates smoothened in Hedgehog Signaling
    • Huang, P. et al. Cellular cholesterol directly activates smoothened in Hedgehog Signaling. Cell 166, 1176-1187 e1114 (2016).
    • (2016) Cell , vol.166 , pp. 1176-1187e1114
    • Huang, P.1
  • 23
    • 84940891731 scopus 로고    scopus 로고
    • Structural basis of the Norrin-Frizzled 4 interaction
    • Shen, G. et al. Structural basis of the Norrin-Frizzled 4 interaction. Cell Res. 25, 1078-1081 (2015).
    • (2015) Cell Res. , vol.25 , pp. 1078-1081
    • Shen, G.1
  • 24
    • 84938517765 scopus 로고    scopus 로고
    • Conformational states of the full-length glucagon receptor
    • Yang, L. et al. Conformational states of the full-length glucagon receptor. Nat. Commun. 6, 7859 (2015).
    • (2015) Nat. Commun. , vol.6 , pp. 7859
    • Yang, L.1
  • 25
    • 84983298724 scopus 로고    scopus 로고
    • Sonidegib for the treatment of advanced basal cell carcinoma: A comprehensive review of sonidegib and the BOLT trial with 12-month update
    • Chen, L., Silapunt, S. & Migden, M. R. Sonidegib for the treatment of advanced basal cell carcinoma: a comprehensive review of sonidegib and the BOLT trial with 12-month update. Future Oncol. 12, 2095-2105 (2016).
    • (2016) Future Oncol. , vol.12 , pp. 2095-2105
    • Chen, L.1    Silapunt, S.2    Migden, M.R.3
  • 26
    • 84924242647 scopus 로고    scopus 로고
    • Smoothened variants explain the majority of drug resistance in basal cell carcinoma
    • Atwood, S. X. et al. Smoothened variants explain the majority of drug resistance in basal cell carcinoma. Cancer Cell 27, 342-353 (2015).
    • (2015) Cancer Cell , vol.27 , pp. 342-353
    • Atwood, S.X.1
  • 27
    • 84924262003 scopus 로고    scopus 로고
    • Genomic analysis of smoothened inhibitor resistance in basal cell carcinoma
    • Sharpe, H. J. et al. Genomic analysis of smoothened inhibitor resistance in basal cell carcinoma. Cancer Cell 27, 327-341 (2015).
    • (2015) Cancer Cell , vol.27 , pp. 327-341
    • Sharpe, H.J.1
  • 28
    • 81555228396 scopus 로고    scopus 로고
    • Investigational Notch and Hedgehog inhibitors-therapies for cardiovascular disease
    • Redmond, E. M., Guha, S., Walls, D. & Cahill, P. A. Investigational Notch and Hedgehog inhibitors-therapies for cardiovascular disease. Expert Opin. Investig. Drugs 20, 1649-1664 (2011).
    • (2011) Expert Opin. Investig. Drugs , vol.20 , pp. 1649-1664
    • Redmond, E.M.1    Guha, S.2    Walls, D.3    Cahill, P.A.4
  • 29
    • 67649392795 scopus 로고    scopus 로고
    • Crystallizing membrane proteins using lipidic mesophases
    • Caffrey, M. & Cherezov, V. Crystallizing membrane proteins using lipidic mesophases. Nat. Protoc. 4, 706-731 (2009).
    • (2009) Nat. Protoc. , vol.4 , pp. 706-731
    • Caffrey, M.1    Cherezov, V.2
  • 32
    • 34447508216 scopus 로고    scopus 로고
    • Phaser crystallographic software
    • McCoy, A. J. et al. Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674 (2007).
    • (2007) J. Appl. Crystallogr. , vol.40 , pp. 658-674
    • McCoy, A.J.1
  • 33
    • 84887326705 scopus 로고    scopus 로고
    • Structure and function of the Smoothened extracellular domain in vertebrate Hedgehog signaling
    • Nachtergaele, S. et al. Structure and function of the Smoothened extracellular domain in vertebrate Hedgehog signaling. eLife 2, e01340 (2013).
    • (2013) ELife , vol.2 , pp. e01340
    • Nachtergaele, S.1
  • 34
    • 0035071134 scopus 로고    scopus 로고
    • Structures and comparison of the Y98H (2.0A) and Y98W (1.5A) mutants of flavodoxin (Desulfovibrio vulgaris)
    • Reynolds, R. A., Watt, W. & Watenpaugh, K. D. Structures and comparison of the Y98H (2.0A) and Y98W (1.5A) mutants of flavodoxin (Desulfovibrio vulgaris). Acta Crystallogr. D Biol. Crystallogr. 57, 527-535 (2001).
    • (2001) Acta Crystallogr. D Biol. Crystallogr. , vol.57 , pp. 527-535
    • Reynolds, R.A.1    Watt, W.2    Watenpaugh, K.D.3
  • 38
    • 84907020020 scopus 로고    scopus 로고
    • Preparation of microcrystals in lipidic cubic phase for serial femtosecond crystallography
    • Liu, W., Ishchenko, A. & Cherezov, V. Preparation of microcrystals in lipidic cubic phase for serial femtosecond crystallography. Nat. Protoc. 9, 2123-2134 (2014).
    • (2014) Nat. Protoc. , vol.9 , pp. 2123-2134
    • Liu, W.1    Ishchenko, A.2    Cherezov, V.3
  • 39
    • 5144234232 scopus 로고    scopus 로고
    • Rational design of lipid for membrane protein crystallization
    • Misquitta, Y. et al. Rational design of lipid for membrane protein crystallization. J. Struct. Biol. 148, 169-175 (2004).
    • (2004) J. Struct. Biol. , vol.148 , pp. 169-175
    • Misquitta, Y.1
  • 40
    • 84929465126 scopus 로고    scopus 로고
    • The Coherent X-ray Imaging instrument at the Linac Coherent Light Source
    • Liang, M. et al. The Coherent X-ray Imaging instrument at the Linac Coherent Light Source. J. Synchrotron. Radiat. 22, 514-519 (2015).
    • (2015) J. Synchrotron. Radiat. , vol.22 , pp. 514-519
    • Liang, M.1
  • 41
    • 84879345494 scopus 로고    scopus 로고
    • Crystallographic data processing for free-electron laser sources
    • White, T. A. et al. Crystallographic data processing for free-electron laser sources. Acta Crystallogr. D Biol. Crystallogr. 69, 1231-1240 (2013).
    • (2013) Acta Crystallogr. D Biol. Crystallogr. , vol.69 , pp. 1231-1240
    • White, T.A.1
  • 42
    • 84859777150 scopus 로고    scopus 로고
    • CrystFEL: A software suite for snapshot serial crystallography
    • White, T. A. et al. CrystFEL: a software suite for snapshot serial crystallography. J. Appl. Crystallogr. 45, 335-341 (2012).
    • (2012) J. Appl. Crystallogr. , vol.45 , pp. 335-341
    • White, T.A.1
  • 43
    • 80054081804 scopus 로고    scopus 로고
    • Ligand-dependent perturbation of the conformational ensemble for the GPCR beta2 adrenergic receptor revealed by HDX
    • West, G. M. et al. Ligand-dependent perturbation of the conformational ensemble for the GPCR beta2 adrenergic receptor revealed by HDX. Structure 19, 1424-1432 (2011).
    • (2011) Structure , vol.19 , pp. 1424-1432
    • West, G.M.1
  • 44
    • 84865763488 scopus 로고    scopus 로고
    • HDX workbench: Software for the analysis of H/D exchange MS data
    • Pascal, B. D. et al. HDX workbench: software for the analysis of H/D exchange MS data. J. Am. Soc. Mass. Spectrom. 23, 1512-1521 (2012).
    • (2012) J. Am. Soc. Mass. Spectrom. , vol.23 , pp. 1512-1521
    • Pascal, B.D.1
  • 45
    • 84864872866 scopus 로고    scopus 로고
    • PrimeX and the Schrödinger computational chemistry suite of programs
    • Bell, J. A. et al. PrimeX and the Schrödinger computational chemistry suite of programs. International Tables for Crystallography 534-538 (2012).
    • (2012) International Tables for Crystallography , pp. 534-538
    • Bell, J.A.1
  • 46
    • 84880529288 scopus 로고    scopus 로고
    • Protein and ligand preparation: Parameters, protocols, and influence on virtual screening enrichments
    • Sastry, G. M., Adzhigirey, M., Day, T., Annabhimoju, R. & Sherman, W. Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments. J. Comput. Aided Mol. Des. 27, 221-234 (2013).
    • (2013) J. Comput. Aided Mol. Des. , vol.27 , pp. 221-234
    • Sastry, G.M.1    Adzhigirey, M.2    Day, T.3    Annabhimoju, R.4    Sherman, W.5
  • 47
    • 84955167919 scopus 로고    scopus 로고
    • CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field
    • Lee, J. et al. CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field. J. Chem. Theory Comput. 12, 405-413 (2016).
    • (2016) J. Chem. Theory Comput. , vol.12 , pp. 405-413
    • Lee, J.1
  • 48
    • 77953513118 scopus 로고    scopus 로고
    • Improved side-chain torsion potentials for the Amber ff99SB protein force field
    • Lindorff-Larsen, K. et al. Improved side-chain torsion potentials for the Amber ff99SB protein force field. Proteins 78, 1950-1958 (2010).
    • (2010) Proteins , vol.78 , pp. 1950-1958
    • Lindorff-Larsen, K.1
  • 49
    • 84872131879 scopus 로고    scopus 로고
    • Another piece of the membrane puzzle: Extending slipids further
    • Jambeck, J. P. & Lyubartsev, A. P. Another piece of the membrane puzzle: extending slipids further. J. Chem. Theory Comput. 9, 774-784 (2013).
    • (2013) J. Chem. Theory Comput. , vol.9 , pp. 774-784
    • Jambeck, J.P.1    Lyubartsev, A.P.2
  • 50
    • 84946416234 scopus 로고    scopus 로고
    • GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
    • Abraham, M. J. et al. GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers. Software X 1, 19-25 (2015).
    • (2015) Software X , vol.1 , pp. 19-25
    • Abraham, M.J.1
  • 51
    • 84992409174 scopus 로고    scopus 로고
    • Solasonine, a natural glycoalkaloid compound, inhibits gli-mediated transcriptional activity
    • Yang, J., Huang, W. & Tan, W. Solasonine, a natural glycoalkaloid compound, inhibits gli-mediated transcriptional activity. Molecules 21, e1364 (2016).
    • (2016) Molecules , vol.21 , pp. e1364
    • Yang, J.1    Huang, W.2    Tan, W.3
  • 52
    • 74549178560 scopus 로고    scopus 로고
    • MolProbity: All-atom structure validation for macromolecular crystallography
    • Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta. Crystallogr. D Biol. Crystallogr. 66, 12-21 (2010).
    • (2010) Acta. Crystallogr. D Biol. Crystallogr. , vol.66 , pp. 12-21
    • Chen, V.B.1


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