-
1
-
-
84944276251
-
Identification of heat shock protein families and J-protein types by incorporating dipeptide composition into Chou s general PseAAC
-
Ahmad, S. et al. (2015) Identification of heat shock protein families and J-protein types by incorporating dipeptide composition into Chou s general PseAAC. Comput. Methods Prog. Biomed., 122, 165-174.
-
(2015)
Comput. Methods Prog. Biomed
, vol.122
, pp. 165-174
-
-
Ahmad, S.1
-
2
-
-
84984865341
-
dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation
-
Chen, J. et al. (2016a) dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation. Sci. Rep., 6, 32333.
-
(2016)
Sci. Rep
, vol.6
, pp. 32333
-
-
Chen, J.1
-
3
-
-
85015236342
-
iRNA-PseU: identifying RNA pseudouridine sites
-
Chen, W. et al. (2016b) iRNA-PseU: identifying RNA pseudouridine sites. Mol. Ther. Nucleic Acids, 5, e332.
-
(2016)
Mol. Ther. Nucleic Acids
, vol.5
, pp. e332
-
-
Chen, W.1
-
4
-
-
84859732713
-
Predicting anatomical therapeutic chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities
-
Chen, L. et al. (2012) Predicting anatomical therapeutic chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities. PLoS One, 7, e35254.
-
(2012)
PLoS One
, vol.7
, pp. e35254
-
-
Chen, L.1
-
5
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
-
Chou, K.C. (2011) Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J. Theor. Biol., 273, 236-247.
-
(2011)
J. Theor. Biol
, vol.273
, pp. 236-247
-
-
Chou, K.C.1
-
6
-
-
84877758233
-
Some remarks on predicting multi-label attributes in molecular biosystems
-
Chou, K.C. (2013) Some remarks on predicting multi-label attributes in molecular biosystems. Mol. Biosyst., 9, 1092-1100.
-
(2013)
Mol. Biosyst
, vol.9
, pp. 1092-1100
-
-
Chou, K.C.1
-
7
-
-
18344391868
-
Prediction of membrane protein types by incorporating amphipathic effects
-
Chou, K.C., and Cai, Y.D. (2005) Prediction of membrane protein types by incorporating amphipathic effects. J. Chem. Inf. Model., 45, 407-413.
-
(2005)
J. Chem. Inf. Model
, vol.45
, pp. 407-413
-
-
Chou, K.C.1
Cai, Y.D.2
-
8
-
-
34249318001
-
Euk-mPLoc: A fusion classifier for largescale eukaryotic protein subcellular location prediction by incorporating multiple sites
-
Chou, K.C., and Shen, H.B. (2007a) Euk-mPLoc: A fusion classifier for largescale eukaryotic protein subcellular location prediction by incorporating multiple sites. J. Proteome Res., 6, 1728-1734.
-
(2007)
J. Proteome Res
, vol.6
, pp. 1728-1734
-
-
Chou, K.C.1
Shen, H.B.2
-
9
-
-
34548606295
-
Review: recent progresses in protein subcellular location prediction
-
Chou, K.C., and Shen, H.B. (2007b) Review: recent progresses in protein subcellular location prediction. Anal. Biochem., 370, 1-16.
-
(2007)
Anal. Biochem
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
10
-
-
0029157083
-
Review: prediction of protein structural classes
-
Chou, K.C., and Zhang, C.T. (1995) Review: prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol, 30, 275-349.
-
(1995)
Crit. Rev. Biochem. Mol. Biol
, vol.30
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
11
-
-
79953316878
-
iLoc-Euk: A multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins
-
Chou, K.C. et al. (2011) iLoc-Euk: A multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins. PLoS One, 6, e18258.
-
(2011)
PLoS One
, vol.6
, pp. e18258
-
-
Chou, K.C.1
-
12
-
-
84855641685
-
iLoc-Hum: using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites
-
Chou, K.C. et al. (2012) iLoc-Hum: using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites. Mol. Biosyst., 8, 629-641.
-
(2012)
Mol. Biosyst
, vol.8
, pp. 629-641
-
-
Chou, K.C.1
-
13
-
-
84908072570
-
Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou s general PseAAC
-
Dehzangi, A. et al. (2015) Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou s general PseAAC. J. Theor. Biol., 364, 284-294.
-
(2015)
J. Theor. Biol
, vol.364
, pp. 284-294
-
-
Dehzangi, A.1
-
14
-
-
48449090136
-
SuperPred: drug classification and target prediction
-
Dunkel, M. et al. (2008) SuperPred: drug classification and target prediction. Nucleic Acids Res., 36, 55-59.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 55-59
-
-
Dunkel, M.1
-
15
-
-
84896470341
-
iNR-Drug: predicting the interaction of drugs with nuclear receptors in cellular networking
-
Fan, Y.N. et al. (2014) iNR-Drug: predicting the interaction of drugs with nuclear receptors in cellular networking. Int. J. Mol. Sci., 15, 4915-4937.
-
(2014)
Int. J. Mol. Sci
, vol.15
, pp. 4915-4937
-
-
Fan, Y.N.1
-
16
-
-
84876379510
-
A multilabel model based on Chou s pseudo amino acid composition for identifying membrane proteins with both single and multiple functional types
-
Huang, C., and Yuan, J.Q. (2013) A multilabel model based on Chou s pseudo amino acid composition for identifying membrane proteins with both single and multiple functional types. J. Membr. Biol., 246, 327-334.
-
(2013)
J. Membr. Biol
, vol.246
, pp. 327-334
-
-
Huang, C.1
Yuan, J.Q.2
-
17
-
-
84973637727
-
iCar-PseCp: identify carbonylation sites in proteins by Monto Carlo sampling and incorporating sequence coupled effects into general PseAAC
-
Jia, J. et al. (2016a) iCar-PseCp: identify carbonylation sites in proteins by Monto Carlo sampling and incorporating sequence coupled effects into general PseAAC. Oncotarget, 7, 34558-34570.
-
(2016)
Oncotarget
, vol.7
, pp. 34558-34570
-
-
Jia, J.1
-
18
-
-
84961384421
-
iSuc-PseOpt: identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset
-
Jia, J. et al. (2016b) iSuc-PseOpt: identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset. Anal. Biochem., 497, 48-56.
-
(2016)
Anal. Biochem
, vol.497
, pp. 48-56
-
-
Jia, J.1
-
19
-
-
84957073578
-
pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
-
Jia, J. et al. (2016c) pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach. J. Theor. Biol., 394, 223-230.
-
(2016)
J. Theor. Biol
, vol.394
, pp. 223-230
-
-
Jia, J.1
-
20
-
-
84995377061
-
pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC
-
Jia, J. et al. (2016d) pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC. Bioinformatics, 32, 3133-3141.
-
(2016)
Bioinformatics
, vol.32
, pp. 3133-3141
-
-
Jia, J.1
-
21
-
-
0345863935
-
The KEGG resources for deciphering the genome
-
Kanehisa, M. et al. (2004) The KEGG resources for deciphering the genome. Nucleic Acids Res., 32, D277-D280.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D277-D280
-
-
Kanehisa, M.1
-
22
-
-
84911416290
-
Discrimination of acidic and alkaline enzyme using Chou s pseudo amino acid composition in conjunction with probabilistic neural network model
-
Khan, Z.U. et al. (2015) Discrimination of acidic and alkaline enzyme using Chou s pseudo amino acid composition in conjunction with probabilistic neural network model. J. Theor. Biol., 365, 197-203.
-
(2015)
J. Theor. Biol
, vol.365
, pp. 197-203
-
-
Khan, Z.U.1
-
23
-
-
84555188306
-
The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals
-
Kotera, M. et al. (2012) The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals. Methods Mol. Biol., 802, 19-39.
-
(2012)
Methods Mol. Biol
, vol.802
, pp. 19-39
-
-
Kotera, M.1
-
24
-
-
84908628104
-
Prediction of beta-lactamase and its class by Chou s pseudo amino acid composition and support vector machine
-
Kumar, R. et al. (2015) Prediction of beta-lactamase and its class by Chou s pseudo amino acid composition and support vector machine. J. Theor. Biol., 365, 96-103.
-
(2015)
J. Theor. Biol
, vol.365
, pp. 96-103
-
-
Kumar, R.1
-
25
-
-
84896829783
-
Large-scale linear rankSVM
-
Lee, C.P., and Lin, C.J. (2014) Large-scale linear rankSVM. Neural Comput., 26, 781-817.
-
(2014)
Neural Comput
, vol.26
, pp. 781-817
-
-
Lee, C.P.1
Lin, C.J.2
-
26
-
-
84863663777
-
Intelligent ZHENG classification of hypertension depending on ML-kNN and information fusion
-
Li, G.Z. et al. (2012) Intelligent ZHENG classification of hypertension depending on ML-kNN and information fusion. Evid. Based Complement. Altern. Med., 2012, 837245.
-
(2012)
Evid. Based Complement. Altern. Med
, vol.2012
, pp. 837245
-
-
Li, G.Z.1
-
27
-
-
84874928986
-
iLoc-Animal: A multi-label learning classifier for predicting subcellular localization of animal proteins
-
Lin, W.Z. et al. (2013) iLoc-Animal: A multi-label learning classifier for predicting subcellular localization of animal proteins. Mol. BioSyst., 9, 634-644.
-
(2013)
Mol. BioSyst
, vol.9
, pp. 634-644
-
-
Lin, W.Z.1
-
28
-
-
84921023793
-
PseDNA-Pro: DNA-binding protein identification by combining Chou s PseAAC and physicochemical distance transformation
-
Liu, B. et al. (2015) PseDNA-Pro: DNA-binding protein identification by combining Chou s PseAAC and physicochemical distance transformation. Mol. Informatics, 34, 8-17.
-
(2015)
Mol. Informatics
, vol.34
, pp. 8-17
-
-
Liu, B.1
-
29
-
-
84962263478
-
iEnhancer-2L: A two-layer predictor for identifying enhancers and their strength by pseudo k-Tuple nucleotide composition
-
Liu, B. et al. (2016a) iEnhancer-2L: A two-layer predictor for identifying enhancers and their strength by pseudo k-Tuple nucleotide composition. Bioinformatics, 32, 362-389.
-
(2016)
Bioinformatics
, vol.32
, pp. 362-389
-
-
Liu, B.1
-
30
-
-
84983353017
-
iDHS-EL: identifying DNase I hypersensi-Tivesites by fusing three different modes of pseudo nucleotide composition into an en-semble learning framework
-
Liu, B. et al. (2016b) iDHS-EL: identifying DNase I hypersensi-Tivesites by fusing three different modes of pseudo nucleotide composition into an en-semble learning framework. Bioinformatics, 32, 2411-2418.
-
(2016)
Bioinformatics
, vol.32
, pp. 2411-2418
-
-
Liu, B.1
-
31
-
-
85014869605
-
iRSpot-EL: identify recombination spots with an ensemble learning approach
-
Liu, B. et al. (2016c) iRSpot-EL: identify recombination spots with an ensemble learning approach. Bioinformatics, doi: 10.1093/bioinformatics/ btw539.
-
(2016)
Bioinformatics
-
-
Liu, B.1
-
32
-
-
84956829573
-
pRNAm-PC: predicting N-methyladenosine sites in RNA sequences via physical-chemical properties
-
Liu, Z. et al. (2016d) pRNAm-PC: predicting N-methyladenosine sites in RNA sequences via physical-chemical properties. Anal. Biochem., 497, 60-67.
-
(2016)
Anal. Biochem
, vol.497
, pp. 60-67
-
-
Liu, Z.1
-
33
-
-
84893021381
-
iEzy-Drug: A web server for identifying the interaction between enzymes and drugs in cellular networking
-
Min, J.L. et al. (2013) iEzy-Drug: A web server for identifying the interaction between enzymes and drugs in cellular networking. BioMed Res. Int., 2013, 701317.
-
(2013)
BioMed Res. Int
, vol.2013
, pp. 701317
-
-
Min, J.L.1
-
34
-
-
84904722553
-
Prediction of protein structure classes by incorporating different protein descriptors into general Chou s pseudo amino acid composition
-
Nanni, L. et al. (2014) Prediction of protein structure classes by incorporating different protein descriptors into general Chou s pseudo amino acid composition. J. Theor. Biol., 360, 109-116.
-
(2014)
J. Theor. Biol
, vol.360
, pp. 109-116
-
-
Nanni, L.1
-
35
-
-
84995428311
-
iPTM-mLys: identifying multiple lysine PTM sites and their different types
-
Qiu, W.R. et al. (2016) iPTM-mLys: identifying multiple lysine PTM sites and their different types. Bioinformatics, 32, 3116-3223.
-
(2016)
Bioinformatics
, vol.32
, pp. 3116-3223
-
-
Qiu, W.R.1
-
36
-
-
33847668306
-
Hum-mPLoc: An ensemble classifier for largescale human protein subcellular location prediction by incorporating samples with multiple sites
-
Shen, H.B., and Chou, K.C. (2007a) Hum-mPLoc: An ensemble classifier for largescale human protein subcellular location prediction by incorporating samples with multiple sites. Biochem. Biophys. Res. Commun., 355, 1006-1011.
-
(2007)
Biochem. Biophys. Res. Commun
, vol.355
, pp. 1006-1011
-
-
Shen, H.B.1
Chou, K.C.2
-
37
-
-
33847260136
-
Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virusinfected cells
-
Shen, H.B., and Chou, K.C. (2007b) Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virusinfected cells. Biopolymers, 85, 233-240.
-
(2007)
Biopolymers
, vol.85
, pp. 233-240
-
-
Shen, H.B.1
Chou, K.C.2
-
38
-
-
84939476364
-
MultiP-SChlo: multi-label protein subchloroplast localization prediction with Chou s pseudo amino acid composition and a novel multi-label classifier
-
Wang, X. et al. (2015) MultiP-SChlo: multi-label protein subchloroplast localization prediction with Chou s pseudo amino acid composition and a novel multi-label classifier. Bioinformatics, 31, 2639-2645.
-
(2015)
Bioinformatics
, vol.31
, pp. 2639-2645
-
-
Wang, X.1
-
39
-
-
84883223749
-
Relating anatomical therapeutic indications by the ensemble similarity of drug sets
-
Wu, L. et al. (2013) Relating anatomical therapeutic indications by the ensemble similarity of drug sets. J. Chem. Info. Model., 53, 2154-2160.
-
(2013)
J. Chem. Info. Model
, vol.53
, pp. 2154-2160
-
-
Wu, L.1
-
40
-
-
80755158862
-
iLoc-Plant: A multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
-
Wu, Z.C. et al. (2011) iLoc-Plant: A multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites. Mol. BioSyst., 7, 3287-3297.
-
(2011)
Mol. BioSyst
, vol.7
, pp. 3287-3297
-
-
Wu, Z.C.1
-
41
-
-
84858255890
-
iLoc-Gpos: A multi-layer classifier for predicting the subcellular localization of singleplex and multiplex Gram-positive bacterial proteins
-
Wu, Z.C. et al. (2012) iLoc-Gpos: A multi-layer classifier for predicting the subcellular localization of singleplex and multiplex Gram-positive bacterial proteins. Protein Pept. Lett., 19, 4-14.
-
(2012)
Protein Pept. Lett
, vol.19
, pp. 4-14
-
-
Wu, Z.C.1
-
42
-
-
79959667141
-
iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
-
Xiao, X. et al. (2011) iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites. J. Theor. Biol., 284, 42-51.
-
(2011)
J. Theor. Biol
, vol.284
, pp. 42-51
-
-
Xiao, X.1
-
43
-
-
84883661549
-
iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
-
Xiao, X. et al. (2013a) iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints. J. Theor. Biol., 337C, 71-79.
-
(2013)
J. Theor. Biol
, vol.337C
, pp. 71-79
-
-
Xiao, X.1
-
44
-
-
84883143619
-
iGPCR-Drug: A web server for predicting interaction between GPCRs and drugs in cellular networking
-
Xiao, X. et al. (2013b) iGPCR-Drug: A web server for predicting interaction between GPCRs and drugs in cellular networking. PLoS One, 8, e72234.
-
(2013)
PLoS One
, vol.8
, pp. e72234
-
-
Xiao, X.1
-
45
-
-
84887868490
-
Predict drug-protein interaction in cellular networking
-
Xiao, X. et al. (2013c) Predict drug-protein interaction in cellular networking. Curr. Top. Med. Chem., 13, 1707-1712.
-
(2013)
Curr. Top. Med. Chem
, vol.13
, pp. 1707-1712
-
-
Xiao, X.1
-
46
-
-
84875074764
-
iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types
-
Xiao, X. et al. (2013d) iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types. Anal. Biochem., 436, 168-177.
-
(2013)
Anal. Biochem
, vol.436
, pp. 168-177
-
-
Xiao, X.1
-
47
-
-
84938953300
-
iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via the benchmark dataset optimization approach
-
Xiao, X. et al. (2015) iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via the benchmark dataset optimization approach. J. Biomol. Struct. Dyn., 33, 2221-2233.
-
(2015)
J. Biomol. Struct. Dyn
, vol.33
, pp. 2221-2233
-
-
Xiao, X.1
-
48
-
-
54749084166
-
An intriguing controversy over protein structural class prediction
-
Zhou, G.P. (1998) An intriguing controversy over protein structural class prediction. J. Protein Chem., 17, 729-738.
-
(1998)
J. Protein Chem
, vol.17
, pp. 729-738
-
-
Zhou, G.P.1
-
49
-
-
0037233515
-
Subcellular location prediction of apoptosis proteins
-
Zhou, G.P., and Doctor, K. (2003) Subcellular location prediction of apoptosis proteins. Proteins Struct. Funct. Genet., 50, 44-48.
-
(2003)
Proteins Struct. Funct. Genet
, vol.50
, pp. 44-48
-
-
Zhou, G.P.1
Doctor, K.2
|