-
1
-
-
48449090136
-
SuperPred: drug classification and target prediction
-
Dunkel M, Günther S, Ahmed J, Wittig B, Preissner R, (2008) SuperPred: drug classification and target prediction. Nucleic acids research 36: W55-W59.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Dunkel, M.1
Günther, S.2
Ahmed, J.3
Wittig, B.4
Preissner, R.5
-
2
-
-
69549090088
-
Concept-based semi-automatic classification of drugs
-
Gurulingappa H, Kolářik C, Hofmann-Apitius M, Fluck J, (2009) Concept-based semi-automatic classification of drugs. Journal of chemical information and modeling 49: 1986-1992.
-
(2009)
Journal of Chemical Information and Modeling
, vol.49
, pp. 1986-1992
-
-
Gurulingappa, H.1
Kolářik, C.2
Hofmann-Apitius, M.3
Fluck, J.4
-
3
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S, (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic acids research 28: 27-30.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
4
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic acids research 38: D355-D360.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
5
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo amino acid composition
-
(Erratum: 2001, Vol44, 60)
-
Chou KC, (2001) Prediction of protein cellular attributes using pseudo amino acid composition. PROTEINS: Structure, Function, and Genetics (Erratum: 2001, Vol44, 60) 43: 246-255.
-
(2001)
PROTEINS: Structure, Function, and Genetics
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
6
-
-
78650173607
-
Predicting subcellular location of proteins using integrated-algorithm method
-
Cai YD, Lu L, Chen L, He JF, (2010) Predicting subcellular location of proteins using integrated-algorithm method. Molecular Diversity 14: 551-558.
-
(2010)
Molecular Diversity
, vol.14
, pp. 551-558
-
-
Cai, Y.D.1
Lu, L.2
Chen, L.3
He, J.F.4
-
7
-
-
53149132374
-
ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information
-
Chou KC, Shen HB, (2008) ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochem Biophys Res Comm 376: 321-325.
-
(2008)
Biochem Biophys Res Comm
, vol.376
, pp. 321-325
-
-
Chou, K.C.1
Shen, H.B.2
-
8
-
-
2942601555
-
Support vector machines for predicting protein structural class
-
Cai YD, Liu XJ, Xu X, Zhou GP, (2001) Support vector machines for predicting protein structural class. BMC bioinformatics 2: 3.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 3
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.3
Zhou, G.P.4
-
9
-
-
34247544233
-
Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides
-
Chou KC, Shen HB, (2007) Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides. Biochem Biophys Res Comm 357: 633-640.
-
(2007)
Biochem Biophys Res Comm
, vol.357
, pp. 633-640
-
-
Chou, K.C.1
Shen, H.B.2
-
10
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
-
Chou KC, (2011) Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). Journal of Theoretical Biology 273: 236-247.
-
(2011)
Journal of Theoretical Biology
, vol.273
, pp. 236-247
-
-
Chou, K.C.1
-
12
-
-
77955199287
-
Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks
-
Huang T, Shi XH, Wang P, He Z, Feng KY, et al. (2010) Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks PLoS ONE 5: e10972.
-
(2010)
PLoS ONE
, vol.5
-
-
Huang, T.1
Shi, X.H.2
Wang, P.3
He, Z.4
Feng, K.Y.5
-
13
-
-
79251604991
-
Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties
-
Hu L, Huang T, Shi X, Lu WC, Cai YD, et al. (2011) Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties. PLoS ONE 6: e14556.
-
(2011)
PLoS ONE
, vol.6
-
-
Hu, L.1
Huang, T.2
Shi, X.3
Lu, W.C.4
Cai, Y.D.5
-
14
-
-
1542327694
-
Whole-genome annotation by using evidence integration in functional-linkage networks
-
Karaoz U, Murali TM, Letovsky S, Zheng Y, Ding C, et al. (2004) Whole-genome annotation by using evidence integration in functional-linkage networks. Proc Natl Acad Sci U S A 101: 2888-2893.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 2888-2893
-
-
Karaoz, U.1
Murali, T.M.2
Letovsky, S.3
Zheng, Y.4
Ding, C.5
-
15
-
-
77953298113
-
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0
-
Chou KC, Shen HB, (2010) A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0 PLoS ONE 5: e9931.
-
(2010)
PLoS ONE
, vol.5
-
-
Chou, K.C.1
Shen, H.B.2
-
16
-
-
80755158862
-
iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
-
Wu ZC, Xiao X, Chou KC, (2011) iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites. Molecular BioSystems 7: 3287-3297.
-
(2011)
Molecular BioSystems
, vol.7
, pp. 3287-3297
-
-
Wu, Z.C.1
Xiao, X.2
Chou, K.C.3
-
17
-
-
84855641685
-
iLoc-Hum: Using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites
-
Chou KC, Wu ZC, Xiao X, (2012) iLoc-Hum: Using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites. Molecular Biosystems 8: 629-641.
-
(2012)
Molecular Biosystems
, vol.8
, pp. 629-641
-
-
Chou, K.C.1
Wu, Z.C.2
Xiao, X.3
-
18
-
-
34548606295
-
Review: Recent progresses in protein subcellular location prediction
-
Chou KC, Shen HB, (2007) Review: Recent progresses in protein subcellular location prediction. Analytical Biochemistry 370: 1-16.
-
(2007)
Analytical Biochemistry
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
19
-
-
38549130733
-
STITCH: interaction networks of chemicals and proteins
-
Kuhn M, von Mering C, Campillos M, Jensen LJ, Bork P, (2008) STITCH: interaction networks of chemicals and proteins. Nucleic Acids Res 36: D684-688.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kuhn, M.1
von Mering, C.2
Campillos, M.3
Jensen, L.J.4
Bork, P.5
-
20
-
-
0019021450
-
Graphical rules for enzyme-catalyzed rate laws
-
Chou KC, Forsen S, (1980) Graphical rules for enzyme-catalyzed rate laws. Biochemical Journal 187: 829-835.
-
(1980)
Biochemical Journal
, vol.187
, pp. 829-835
-
-
Chou, K.C.1
Forsen, S.2
-
21
-
-
0021764092
-
An extension of Chou's graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways
-
Zhou GP, Deng MH, (1984) An extension of Chou's graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways. Biochemical Journal 222: 169-176.
-
(1984)
Biochemical Journal
, vol.222
, pp. 169-176
-
-
Zhou, G.P.1
Deng, M.H.2
-
22
-
-
0024971003
-
Graphic rules in steady and non-steady enzyme kinetics
-
Chou KC, (1989) Graphic rules in steady and non-steady enzyme kinetics. Journal of Biological Chemistry 264: 12074-12079.
-
(1989)
Journal of Biological Chemistry
, vol.264
, pp. 12074-12079
-
-
Chou, K.C.1
-
23
-
-
0025021607
-
Review: Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems
-
Chou KC, (1990) Review: Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems. Biophysical Chemistry 35: 1-24.
-
(1990)
Biophysical Chemistry
, vol.35
, pp. 1-24
-
-
Chou, K.C.1
-
24
-
-
0027181846
-
The quinoline U-78036 is a potent inhibitor of HIV-1 reverse transcriptase
-
Althaus IW, Gonzales AJ, Chou JJ, Diebel MR, Chou KC, et al. (1993) The quinoline U-78036 is a potent inhibitor of HIV-1 reverse transcriptase. Journal of Biological Chemistry 268: 14875-14880.
-
(1993)
Journal of Biological Chemistry
, vol.268
, pp. 14875-14880
-
-
Althaus, I.W.1
Gonzales, A.J.2
Chou, J.J.3
Diebel, M.R.4
Chou, K.C.5
-
25
-
-
0028071544
-
Review: Steady-state inhibition kinetics of processive nucleic acid polymerases and nucleases
-
Chou KC, Kezdy FJ, Reusser F, (1994) Review: Steady-state inhibition kinetics of processive nucleic acid polymerases and nucleases. Analytical Biochemistry 221: 217-230.
-
(1994)
Analytical Biochemistry
, vol.221
, pp. 217-230
-
-
Chou, K.C.1
Kezdy, F.J.2
Reusser, F.3
-
26
-
-
42149097173
-
Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws: new methods based on directed graphs
-
Andraos J, (2008) Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws: new methods based on directed graphs. Canadian Journal of Chemistry 86: 342-357.
-
(2008)
Canadian Journal of Chemistry
, vol.86
, pp. 342-357
-
-
Andraos, J.1
-
27
-
-
77952868004
-
Graphic rule for drug metabolism systems
-
Chou KC, (2010) Graphic rule for drug metabolism systems. Current Drug Metabolism 11: 369-378.
-
(2010)
Current Drug Metabolism
, vol.11
, pp. 369-378
-
-
Chou, K.C.1
-
28
-
-
79960604768
-
The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
-
Zhou GP, (2011) The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism. Journal of Theoretical Biology 284: 142-148.
-
(2011)
Journal of Theoretical Biology
, vol.284
, pp. 142-148
-
-
Zhou, G.P.1
-
29
-
-
84859342767
-
Wenxiang: a web-server for drawing wenxiang diagrams
-
Chou KC, Lin WZ, Xiao X, (2011) Wenxiang: a web-server for drawing wenxiang diagrams. Natural Science 3: 862-865.
-
(2011)
Natural Science
, vol.3
, pp. 862-865
-
-
Chou, K.C.1
Lin, W.Z.2
Xiao, X.3
-
30
-
-
79960617237
-
The Structural Determinations of the Leucine Zipper Coiled-Coil Domains of the cGMP-Dependent Protein Kinase I alpha and its Interaction with the Myosin Binding Subunit of the Myosin Light Chains Phosphase
-
Zhou GP, (2011) The Structural Determinations of the Leucine Zipper Coiled-Coil Domains of the cGMP-Dependent Protein Kinase I alpha and its Interaction with the Myosin Binding Subunit of the Myosin Light Chains Phosphase. Proteins & Peptide Letters 18: 966-978.
-
(2011)
Proteins & Peptide Letters
, vol.18
, pp. 966-978
-
-
Zhou, G.P.1
-
31
-
-
0141843591
-
Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways
-
Hattori M, Okuno Y, Goto S, Kanehisa M, (2003) Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. Journal of the American Chemical Society 125: 11853-11865.
-
(2003)
Journal of the American Chemical Society
, vol.125
, pp. 11853-11865
-
-
Hattori, M.1
Okuno, Y.2
Goto, S.3
Kanehisa, M.4
-
32
-
-
84980090975
-
THE The Distribution of the Flora in the Alpine Zone. 1
-
Jaccard P, (1912) THE The Distribution of the Flora in the Alpine. New Phytologist 11: 37-50.
-
(1912)
New Phytologist
, vol.11
, pp. 37-50
-
-
Jaccard, P.1
-
33
-
-
0141635356
-
An algorithm for the single facility location problem using the Jaccard metric
-
Watson GA, (1983) An algorithm for the single facility location problem using the Jaccard metric. SIAM Journal on Scientific and Statistical Computing 4: 748-756.
-
(1983)
SIAM Journal on Scientific and Statistical Computing
, vol.4
, pp. 748-756
-
-
Watson, G.A.1
-
35
-
-
39449105071
-
Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms (updated version: Cell-PLoc 2.0: An improved package of web-servers for predicting subcellular localization of proteins in various organisms, Natural Science, 2010, 2, 1090-1103)
-
Chou KC, Shen HB, (2008) Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms (updated version: Cell-PLoc 2.0: An improved package of web-servers for predicting subcellular localization of proteins in various organisms, Natural Science, 2010, 2, 1090-1103). Nature Protocols 3: 153-162.
-
(2008)
Nature Protocols
, vol.3
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
-
36
-
-
77649337793
-
Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
-
Esmaeili M, Mohabatkar H, Mohsenzadeh S, (2010) Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. Journal of Theoretical Biology 263: 203-209.
-
(2010)
Journal of Theoretical Biology
, vol.263
, pp. 203-209
-
-
Esmaeili, M.1
Mohabatkar, H.2
Mohsenzadeh, S.3
-
37
-
-
59649123088
-
Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
-
Georgiou DN, Karakasidis TE, Nieto JJ, Torres A, (2009) Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition. Journal of Theoretical Biology 257: 17-26.
-
(2009)
Journal of Theoretical Biology
, vol.257
, pp. 17-26
-
-
Georgiou, D.N.1
Karakasidis, T.E.2
Nieto, J.J.3
Torres, A.4
-
38
-
-
79953316878
-
iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins
-
Chou KC, Wu ZC, Xiao X, (2011) iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins. PLoS One 6: e18258.
-
(2011)
PLoS One
, vol.6
-
-
Chou, K.C.1
Wu, Z.C.2
Xiao, X.3
-
39
-
-
79955564229
-
Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
-
Mohabatkar H, Mohammad Beigi M, Esmaeili A, (2011) Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine. Journal of Theoretical Biology 281: 18-23.
-
(2011)
Journal of Theoretical Biology
, vol.281
, pp. 18-23
-
-
Mohabatkar, H.1
Mohammad, B.M.2
Esmaeili, A.3
-
40
-
-
77956199192
-
Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization
-
Chou KC, Shen HB, (2010) Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization. PLoS ONE 5: e11335.
-
(2010)
PLoS ONE
, vol.5
-
-
Chou, K.C.1
Shen, H.B.2
-
41
-
-
84858255890
-
iLoc-Gpos: A Multi-Layer Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Gram-Positive Bacterial Proteins
-
Wu ZC, Xiao X, Chou KC, (2012) iLoc-Gpos: A Multi-Layer Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Gram-Positive Bacterial Proteins. Protein & Peptide Letters 19: 4-14.
-
(2012)
Protein & Peptide Letters
, vol.19
, pp. 4-14
-
-
Wu, Z.C.1
Xiao, X.2
Chou, K.C.3
-
42
-
-
77951992931
-
Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chou's Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns
-
Gu Q, Ding YS, Zhang TL, (2010) Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chou's Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns. Protein & Peptide Letters 17: 559-567.
-
(2010)
Protein & Peptide Letters
, vol.17
, pp. 559-567
-
-
Gu, Q.1
Ding, Y.S.2
Zhang, T.L.3
-
43
-
-
80054884571
-
Using a novel AdaBoost algorithm and Chou's pseudo amino acid composition for predicting protein subcellular localization
-
Lin J, Wang Y, (2011) Using a novel AdaBoost algorithm and Chou's pseudo amino acid composition for predicting protein subcellular localization. Protein & Peptide Letters 18: 1219-1225.
-
(2011)
Protein & Peptide Letters
, vol.18
, pp. 1219-1225
-
-
Lin, J.1
Wang, Y.2
-
44
-
-
77958497871
-
Prediction of cyclin proteins using Chou's pseudo amino acid composition
-
Mohabatkar H, (2010) Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein & Peptide Letters 17: 1207-1214.
-
(2010)
Protein & Peptide Letters
, vol.17
, pp. 1207-1214
-
-
Mohabatkar, H.1
-
45
-
-
79959667141
-
iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
-
Xiao X, Wu ZC, Chou KC, (2011) iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites. Journal of Theoretical Biology 284: 42-51.
-
(2011)
Journal of Theoretical Biology
, vol.284
, pp. 42-51
-
-
Xiao, X.1
Wu, Z.C.2
Chou, K.C.3
-
46
-
-
80052855771
-
iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model
-
Lin WZ, Fang JA, Xiao X, Chou KC, (2011) iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model. PLoS ONE 6: e24756.
-
(2011)
PLoS ONE
, vol.6
-
-
Lin, W.Z.1
Fang, J.A.2
Xiao, X.3
Chou, K.C.4
-
47
-
-
80051676719
-
NR-2L: A Two-Level Predictor for Identifying Nuclear Receptor Subfamilies Based on Sequence-Derived Features
-
Wang P, Xiao X, Chou KC, (2011) NR-2L: A Two-Level Predictor for Identifying Nuclear Receptor Subfamilies Based on Sequence-Derived Features. PLoS ONE 6: e23505.
-
(2011)
PLoS ONE
, vol.6
-
-
Wang, P.1
Xiao, X.2
Chou, K.C.3
|