-
1
-
-
84878709716
-
Gut metagenome in European women with normal, impaired and diabetic glucose control
-
Karlsson FH, Tremaroli V, Nookaew I, Bergström G, Behre CJ, Fagerberg B, et al. Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature. 2013;498:99-103. http://www.ncbi.nlm.nih.gov/pubmed/23719380.
-
(2013)
Nature.
, vol.498
, pp. 99-103
-
-
Karlsson, F.H.1
Tremaroli, V.2
Nookaew, I.3
Bergström, G.4
Behre, C.J.5
Fagerberg, B.6
-
2
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature. 2012;490:55-60. http://www.ncbi.nlm.nih.gov/pubmed/23023125.
-
(2012)
Nature.
, vol.490
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
Zhang, F.6
-
3
-
-
84872156123
-
Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice
-
Parks BW, Nam E, Org E, Kostem E, Norheim F, Hui ST, et al. Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. Cell Metab. 2013;17:141-52. http://dx.doi.org/10.1016/j.cmet.2012.12.007.
-
(2013)
Cell Metab.
, vol.17
, pp. 141-152
-
-
Parks, B.W.1
Nam, E.2
Org, E.3
Kostem, E.4
Norheim, F.5
Hui, S.T.6
-
4
-
-
33747618036
-
Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice
-
Dumas M-E, Barton RH, Toye A, Cloarec O, Blancher C, Rothwell A, et al. Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice. Proc Natl Acad Sci U S A. 2006;103:12511-6. http://www.ncbi.nlm.nih.gov/pubmed/16895997.
-
(2006)
Proc Natl Acad Sci U S A.
, vol.103
, pp. 12511-12516
-
-
Dumas, M.-E.1
Barton, R.H.2
Toye, A.3
Cloarec, O.4
Blancher, C.5
Rothwell, A.6
-
5
-
-
84978081339
-
Human gut microbes impact host serum metabolome and insulin sensitivity
-
Pedersen HK, Gudmundsdottir V, Nielsen HB, Hyotylainen T, Nielsen T, Jensen BAH, et al. Human gut microbes impact host serum metabolome and insulin sensitivity. Nature. 2016;535:376-81. http://www.ncbi.nlm.nih.gov/pubmed/27409811.
-
(2016)
Nature.
, vol.535
, pp. 376-381
-
-
Pedersen, H.K.1
Gudmundsdottir, V.2
Nielsen, H.B.3
Hyotylainen, T.4
Nielsen, T.5
Jensen, B.A.H.6
-
6
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, et al. Richness of human gut microbiome correlates with metabolic markers. Nature. 2013;500:541-6. http://www.ncbi.nlm.nih.gov/pubmed/23985870.
-
(2013)
Nature.
, vol.500
, pp. 541-546
-
-
Chatelier, E.1
Nielsen, T.2
Qin, J.3
Prifti, E.4
Hildebrand, F.5
Falony, G.6
-
7
-
-
85018193359
-
Interactions between gut microbiota, host genetics and diet modulate the predisposition to obesity and metabolic syndrome
-
Ussar S, Griffin NW, Bezy O, Fujisaka S, Vienberg S, Softic S, et al. Interactions between gut microbiota, host genetics and diet modulate the predisposition to obesity and metabolic syndrome. Cell Metab. 2015;22:516-30. http://www.ncbi.nlm.nih.gov/pubmed/26299453.
-
(2015)
Cell Metab.
, vol.22
, pp. 516-530
-
-
Ussar, S.1
Griffin, N.W.2
Bezy, O.3
Fujisaka, S.4
Vienberg, S.5
Softic, S.6
-
8
-
-
84959922537
-
Gut microbial metabolite TMAO enhances platelet hyperreactivity and thrombosis risk
-
Zhu W, Gregory JC, Org E, Buffa JA, Gupta N, Wang Z, et al. Gut microbial metabolite TMAO enhances platelet hyperreactivity and thrombosis risk. Cell. 2016;165:111-24. http://www.ncbi.nlm.nih.gov/pubmed/26972052.
-
(2016)
Cell.
, vol.165
, pp. 111-124
-
-
Zhu, W.1
Gregory, J.C.2
Org, E.3
Buffa, J.A.4
Gupta, N.5
Wang, Z.6
-
9
-
-
79953733693
-
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
-
Wang Z, Klipfell E, Bennett BJ, Koeth R, Levison BS, Dugar B, et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature. 2011;472:57-63. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3086762&tool=pmcentrez&rendertype=abstract.
-
(2011)
Nature.
, vol.472
, pp. 57-63
-
-
Wang, Z.1
Klipfell, E.2
Bennett, B.J.3
Koeth, R.4
Levison, B.S.5
Dugar, B.6
-
10
-
-
84921863158
-
Intestinal microbiota-dependent phosphatidylcholine metabolites, diastolic dysfunction, and adverse clinical outcomes in chronic systolic heart failure
-
Tang WHW, Wang Z, Shrestha K, Borowski AG, Wu Y, Troughton RW, et al. Intestinal microbiota-dependent phosphatidylcholine metabolites, diastolic dysfunction, and adverse clinical outcomes in chronic systolic heart failure. J Card Fail. 2015;21:91-6. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4312712&tool=pmcentrez&rendertype=abstract.
-
(2015)
J Card Fail.
, vol.21
, pp. 91-96
-
-
Tang, W.H.W.1
Wang, Z.2
Shrestha, K.3
Borowski, A.G.4
Wu, Y.5
Troughton, R.W.6
-
11
-
-
84962195820
-
Intestinal short chain fatty acids and their link with diet and human health
-
Ríos-Covián D, Ruas-Madiedo P, Margolles A, Gueimonde M, de Los Reyes-Gavilán CG, Salazar N. Intestinal short chain fatty acids and their link with diet and human health. Front Microbiol. 2016;7:185. http://www.ncbi.nlm.nih.gov/pubmed/26925050.
-
(2016)
Front Microbiol.
, vol.7
, pp. 185
-
-
Ríos-Covián, D.1
Ruas-Madiedo, P.2
Margolles, A.3
Gueimonde, M.4
Los Reyes-Gavilán, C.G.5
Salazar, N.6
-
12
-
-
84877331372
-
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
-
Koeth RA, Wang Z, Levison BS, Buffa JA, Org E, Sheehy BT, et al. Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis. Nat Med. 2013;19:576-85. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3650111&tool=pmcentrez&rendertype=abstract.
-
(2013)
Nat Med.
, vol.19
, pp. 576-585
-
-
Koeth, R.A.1
Wang, Z.2
Levison, B.S.3
Buffa, J.A.4
Org, E.5
Sheehy, B.T.6
-
13
-
-
84925862053
-
Gut microbiota-dependent trimethylamine N-oxide (TMAO) pathway contributes to both development of renal insufficiency and mortality risk in chronic kidney disease
-
Tang WHW, Wang Z, Kennedy DJ, Wu Y, Buffa JA, Agatisa-Boyle B, et al. Gut microbiota-dependent trimethylamine N-oxide (TMAO) pathway contributes to both development of renal insufficiency and mortality risk in chronic kidney disease. Circ Res. 2015;116:448-55. http://www.ncbi.nlm.nih.gov/pubmed/25599331.
-
(2015)
Circ Res.
, vol.116
, pp. 448-455
-
-
Tang, W.H.W.1
Wang, Z.2
Kennedy, D.J.3
Wu, Y.4
Buffa, J.A.5
Agatisa-Boyle, B.6
-
14
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen Y-Y, Keilbaugh SA, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science. 2011;334:105-8. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3368382&tool=pmcentrez&rendertype=abstract.
-
(2011)
Science.
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.-Y.5
Keilbaugh, S.A.6
-
15
-
-
84942846589
-
Genetic and environmental control of host-gut microbiota interactions
-
Org E, Parks BW, Joo JWJ, Emert B, Schwartzman W, Kang EY, et al. Genetic and environmental control of host-gut microbiota interactions. Genome Res. 2015;25:1558-69. http://genome.cshlp.org/content/25/10/1558.long.
-
(2015)
Genome Res.
, vol.25
, pp. 1558-1569
-
-
Org, E.1
Parks, B.W.2
Joo, J.W.J.3
Emert, B.4
Schwartzman, W.5
Kang, E.Y.6
-
16
-
-
84910096224
-
Human genetics shape the gut microbiome
-
Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, et al. Human genetics shape the gut microbiome. Cell. 2014;159:789-99. http://www.ncbi.nlm.nih.gov/pubmed/25417156.
-
(2014)
Cell.
, vol.159
, pp. 789-799
-
-
Goodrich, J.K.1
Waters, J.L.2
Poole, A.C.3
Sutter, J.L.4
Koren, O.5
Blekhman, R.6
-
17
-
-
84866168894
-
Functional interactions between the gut microbiota and host metabolism
-
Tremaroli V, Bäckhed F. Functional interactions between the gut microbiota and host metabolism. Nature. 2012;489:242-9. http://www.ncbi.nlm.nih.gov/pubmed/22972297.
-
(2012)
Nature.
, vol.489
, pp. 242-249
-
-
Tremaroli, V.1
Bäckhed, F.2
-
18
-
-
84968918909
-
Population-level analysis of gut microbiome variation
-
Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, et al. Population-level analysis of gut microbiome variation. Science. 2016;352:560-4. http://www.ncbi.nlm.nih.gov/pubmed/27126039.
-
(2016)
Science.
, vol.352
, pp. 560-564
-
-
Falony, G.1
Joossens, M.2
Vieira-Silva, S.3
Wang, J.4
Darzi, Y.5
Faust, K.6
-
19
-
-
84968901892
-
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
-
Zhernakova A, Kurilshikov A, Bonder MJ, Tigchelaar EF, Schirmer M, Vatanen T, et al. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science. 2016;352:565-9. http://www.ncbi.nlm.nih.gov/pubmed/27126040.
-
(2016)
Science.
, vol.352
, pp. 565-569
-
-
Zhernakova, A.1
Kurilshikov, A.2
Bonder, M.J.3
Tigchelaar, E.F.4
Schirmer, M.5
Vatanen, T.6
-
20
-
-
84942870086
-
The gut microbiome contributes to a substantial proportion of the variation in blood lipids
-
Fu J, Bonder MJ, Cenit MC, Tigchelaar EF, Maatman A, Dekens JAM, et al. The gut microbiome contributes to a substantial proportion of the variation in blood lipids. Circ Res. 2015;117:817-24. http://www.ncbi.nlm.nih.gov/pubmed/26358192.
-
(2015)
Circ Res.
, vol.117
, pp. 817-824
-
-
Fu, J.1
Bonder, M.J.2
Cenit, M.C.3
Tigchelaar, E.F.4
Maatman, A.5
Dekens, J.A.M.6
-
21
-
-
65549163338
-
Changes in insulin sensitivity and insulin release in relation to glycemia and glucose tolerance in 6,414 Finnish men
-
Stancáková A, Javorský M, Kuulasmaa T, Haffner SM, Kuusisto J, Laakso M. Changes in insulin sensitivity and insulin release in relation to glycemia and glucose tolerance in 6,414 Finnish men. Diabetes. 2009;58:1212-21. http://www.ncbi.nlm.nih.gov/pubmed/19223598.
-
(2009)
Diabetes.
, vol.58
, pp. 1212-1221
-
-
Stancáková, A.1
Javorský, M.2
Kuulasmaa, T.3
Haffner, S.M.4
Kuusisto, J.5
Laakso, M.6
-
22
-
-
54349126970
-
High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota
-
Zoetendal EG, Rajilic-Stojanovic M, de Vos WM. High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut. 2008;57:1605-15. http://www.ncbi.nlm.nih.gov/pubmed/18941009.
-
(2008)
Gut.
, vol.57
, pp. 1605-1615
-
-
Zoetendal, E.G.1
Rajilic-Stojanovic, M.2
Vos, W.M.3
-
23
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, et al. Enterotypes of the human gut microbiome. Nature. 2011;473:174-80. http://www.ncbi.nlm.nih.gov/pubmed/21508958.
-
(2011)
Nature.
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Paslier, D.4
Yamada, T.5
Mende, D.R.6
-
24
-
-
84908067044
-
Rethinking "enterotypes"
-
Knights D, Ward TL, McKinlay CE, Miller H, Gonzalez A, McDonald D, et al. Rethinking "enterotypes". Cell Host Microbe. 2014;16:433-7. http://www.ncbi.nlm.nih.gov/pubmed/25299329.
-
(2014)
Cell Host Microbe.
, vol.16
, pp. 433-437
-
-
Knights, D.1
Ward, T.L.2
McKinlay, C.E.3
Miller, H.4
Gonzalez, A.5
McDonald, D.6
-
25
-
-
84924533418
-
Quantitative serum nuclear magnetic resonance metabolomics in cardiovascular epidemiology and genetics
-
Soininen P, Kangas AJ, Würtz P, Suna T, Ala-Korpela M. Quantitative serum nuclear magnetic resonance metabolomics in cardiovascular epidemiology and genetics. Circ Cardiovasc Genet. 2015;8:192-206. http://www.ncbi.nlm.nih.gov/pubmed/25691689.
-
(2015)
Circ Cardiovasc Genet.
, vol.8
, pp. 192-206
-
-
Soininen, P.1
Kangas, A.J.2
Würtz, P.3
Suna, T.4
Ala-Korpela, M.5
-
26
-
-
57649195613
-
Dietary fats and prevention of type 2 diabetes
-
Risérus U, Willett WC, Hu FB. Dietary fats and prevention of type 2 diabetes. Prog Lipid Res. 2009;48:44-51. http://www.ncbi.nlm.nih.gov/pubmed/19032965.
-
(2009)
Prog Lipid Res.
, vol.48
, pp. 44-51
-
-
Risérus, U.1
Willett, W.C.2
Hu, F.B.3
-
27
-
-
70449574399
-
Interplay between obesity and associated metabolic disorders: new insights into the gut microbiota
-
Cani PD, Delzenne NM. Interplay between obesity and associated metabolic disorders: new insights into the gut microbiota. Curr Opin Pharmacol. 2009;9:737-43. http://www.ncbi.nlm.nih.gov/pubmed/19628432.
-
(2009)
Curr Opin Pharmacol.
, vol.9
, pp. 737-743
-
-
Cani, P.D.1
Delzenne, N.M.2
-
28
-
-
84891524250
-
Assessing the human gut microbiota in metabolic diseases
-
Karlsson F, Tremaroli V, Nielsen J, Bäckhed F. Assessing the human gut microbiota in metabolic diseases. Diabetes. 2013;62:3341-9. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3781439&tool=pmcentrez&rendertype=abstract.
-
(2013)
Diabetes.
, vol.62
, pp. 3341-3349
-
-
Karlsson, F.1
Tremaroli, V.2
Nielsen, J.3
Bäckhed, F.4
-
29
-
-
84928540636
-
Oral supplementation with L-glutamine alters gut microbiota of obese and overweight adults: A pilot study
-
de Souza AZZ, Zambom AZ, Abboud KY, Reis SK, Tannihão F, Guadagnini D, et al. Oral supplementation with L-glutamine alters gut microbiota of obese and overweight adults: A pilot study. Nutrition. 2015;31:884-9. http://www.ncbi.nlm.nih.gov/pubmed/25933498.
-
(2015)
Nutrition.
, vol.31
, pp. 884-889
-
-
Souza, A.Z.Z.1
Zambom, A.Z.2
Abboud, K.Y.3
Reis, S.K.4
Tannihão, F.5
Guadagnini, D.6
-
30
-
-
84860756406
-
Metabolite profiling identifies pathways associated with metabolic risk in humans
-
Cheng S, Rhee EP, Larson MG, Lewis GD, McCabe EL, Shen D, et al. Metabolite profiling identifies pathways associated with metabolic risk in humans. Circulation. 2012;125:2222-31. http://www.ncbi.nlm.nih.gov/pubmed/22496159.
-
(2012)
Circulation.
, vol.125
, pp. 2222-2231
-
-
Cheng, S.1
Rhee, E.P.2
Larson, M.G.3
Lewis, G.D.4
McCabe, E.L.5
Shen, D.6
-
31
-
-
84910129274
-
γ-Butyrobetaine is a proatherogenic intermediate in gut microbial metabolism of L-carnitine to TMAO
-
Koeth RA, Levison BS, Culley MK, Buffa JA, Wang Z, Gregory JC, et al. γ-Butyrobetaine is a proatherogenic intermediate in gut microbial metabolism of L-carnitine to TMAO. Cell Metab. 2014;20:799-812. http://www.cell.com/article/S1550413114004537/fulltext.
-
(2014)
Cell Metab
, vol.20
, pp. 799-812
-
-
Koeth, R.A.1
Levison, B.S.2
Culley, M.K.3
Buffa, J.A.4
Wang, Z.5
Gregory, J.C.6
-
32
-
-
84923913674
-
Transmission of atherosclerosis susceptibility with gut microbial transplantation
-
Gregory JC, Buffa JA, Org E, Wang Z, Levison BS, Zhu W, et al. Transmission of atherosclerosis susceptibility with gut microbial transplantation. J Biol Chem. 2015;290:5647-60. http://www.ncbi.nlm.nih.gov/pubmed/25550161.
-
(2015)
J Biol Chem.
, vol.290
, pp. 5647-5660
-
-
Gregory, J.C.1
Buffa, J.A.2
Org, E.3
Wang, Z.4
Levison, B.S.5
Zhu, W.6
-
33
-
-
85002925090
-
Trimethylamine N-oxide promotes vascular inflammation through signaling of mitogen-activated protein kinase and nuclear factor-ΚB
-
Seldin MM, Meng Y, Qi H, Zhu W, Wang Z, Hazen SL, et al. Trimethylamine N-oxide promotes vascular inflammation through signaling of mitogen-activated protein kinase and nuclear factor-ΚB. J Am Heart Assoc. 2016;5. http://www.ncbi.nlm.nih.gov/pubmed/26903003.
-
(2016)
J Am Heart Assoc
, pp. 5
-
-
Seldin, M.M.1
Meng, Y.2
Qi, H.3
Zhu, W.4
Wang, Z.5
Hazen, S.L.6
-
34
-
-
84876563088
-
Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk
-
Tang WHW, Wang Z, Levison BS, Koeth RA, Britt EB, Fu X, et al. Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk. N Engl J Med. 2013;368:1575-84. http://www.nejm.org/doi/abs/10.1056/NEJMoa1109400.
-
(2013)
N Engl J Med.
, vol.368
, pp. 1575-1584
-
-
Tang, W.H.W.1
Wang, Z.2
Levison, B.S.3
Koeth, R.A.4
Britt, E.B.5
Fu, X.6
-
35
-
-
84965006890
-
Resveratrol attenuates trimethylamine-N-oxide (TMAO)-induced atherosclerosis by regulating TMAO synthesis and bile acid metabolism via remodeling of the gut microbiota
-
Chen M, Yi L, Zhang Y, Zhou X, Ran L, Yang J, et al. Resveratrol attenuates trimethylamine-N-oxide (TMAO)-induced atherosclerosis by regulating TMAO synthesis and bile acid metabolism via remodeling of the gut microbiota. MBio. 2016;7:e02210-5. http://www.ncbi.nlm.nih.gov/pubmed/27048804.
-
(2016)
MBio.
, vol.7
-
-
Chen, M.1
Yi, L.2
Zhang, Y.3
Zhou, X.4
Ran, L.5
Yang, J.6
-
36
-
-
84888133800
-
Metagenomic sequencing of the human gut microbiome before and after bariatric surgery in obese patients with type 2 diabetes: correlation with inflammatory and metabolic parameters
-
Graessler J, Qin Y, Zhong H, Zhang J, Licinio J, Wong M-L, et al. Metagenomic sequencing of the human gut microbiome before and after bariatric surgery in obese patients with type 2 diabetes: correlation with inflammatory and metabolic parameters. Pharmacogenomics J. 2013;13:514-22. http://www.nature.com/doifinder/10.1038/tpj.2012.43.
-
(2013)
Pharmacogenomics J.
, vol.13
, pp. 514-522
-
-
Graessler, J.1
Qin, Y.2
Zhong, H.3
Zhang, J.4
Licinio, J.5
Wong, M.-L.6
-
37
-
-
80054857288
-
Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome
-
Rajilić-Stojanović M, Biagi E, Heilig HGHJ, Kajander K, Kekkonen RA, Tims S, et al. Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome. Gastroenterology. 2011;141:1792-801.
-
(2011)
Gastroenterology
, vol.141
, pp. 1792-1801
-
-
Rajilić-Stojanović, M.1
Biagi, E.2
Heilig, H.G.H.J.3
Kajander, K.4
Kekkonen, R.A.5
Tims, S.6
-
38
-
-
0242300698
-
Follow-up report on the diagnosis of diabetes mellitus
-
Genuth S, Alberti KGMM, Bennett P, Buse J, Defronzo R, Kahn R, et al. Follow-up report on the diagnosis of diabetes mellitus. Diabetes Care. 2003;26:3160-7. http://www.ncbi.nlm.nih.gov/pubmed/14578255.
-
(2003)
Diabetes Care.
, vol.26
, pp. 3160-3167
-
-
Genuth, S.1
Alberti, K.G.M.M.2
Bennett, P.3
Buse, J.4
Defronzo, R.5
Kahn, R.6
-
39
-
-
84887849444
-
Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli
-
Million M, Angelakis E, Maraninchi M, Henry M, Giorgi R, Valero R, et al. Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli. Int J Obes (Lond). 2013;37:1460-6. http://www.ncbi.nlm.nih.gov/pubmed/23459324.
-
(2013)
Int J Obes (Lond)
, vol.37
, pp. 1460-1466
-
-
Million, M.1
Angelakis, E.2
Maraninchi, M.3
Henry, M.4
Giorgi, R.5
Valero, R.6
-
40
-
-
34247371381
-
Understanding the effects of diet on bacterial metabolism in the large intestine
-
Louis P, Scott KP, Duncan SH, Flint HJ. Understanding the effects of diet on bacterial metabolism in the large intestine. J Appl Microbiol. 2007;102:1197-208. http://www.ncbi.nlm.nih.gov/pubmed/17448155.
-
(2007)
J Appl Microbiol.
, vol.102
, pp. 1197-1208
-
-
Louis, P.1
Scott, K.P.2
Duncan, S.H.3
Flint, H.J.4
-
41
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006;444:1027-31. http://dx.doi.org/10.1038/nature05414.
-
(2006)
Nature.
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
42
-
-
73949137604
-
Microbiota and SCFA in lean and overweight healthy subjects
-
Schwiertz A, Taras D, Schäfer K, Beijer S, Bos NA, Donus C, et al. Microbiota and SCFA in lean and overweight healthy subjects. Obesity (Silver Spring). 2010;18:190-5. http://www.ncbi.nlm.nih.gov/pubmed/19498350.
-
(2010)
Obesity (Silver Spring)
, vol.18
, pp. 190-195
-
-
Schwiertz, A.1
Taras, D.2
Schäfer, K.3
Beijer, S.4
Bos, N.A.5
Donus, C.6
-
43
-
-
84921626523
-
Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
-
Everard A, Lazarevic V, Gaïa N, Johansson M, Ståhlman M, Backhed F, et al. Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity. ISME J. 2014;8:2116-30. http://www.nature.com/doifinder/10.1038/ismej.2014.45.
-
(2014)
ISME J.
, vol.8
, pp. 2116-2130
-
-
Everard, A.1
Lazarevic, V.2
Gaïa, N.3
Johansson, M.4
Ståhlman, M.5
Backhed, F.6
-
44
-
-
84899892790
-
The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism
-
Frost G, Sleeth ML, Sahuri-Arisoylu M, Lizarbe B, Cerdan S, Brody L, et al. The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism. Nat Commun. 2014;5:3611. http://www.ncbi.nlm.nih.gov/pubmed/24781306.
-
(2014)
Nat Commun.
, vol.5
, pp. 3611
-
-
Frost, G.1
Sleeth, M.L.2
Sahuri-Arisoylu, M.3
Lizarbe, B.4
Cerdan, S.5
Brody, L.6
-
45
-
-
84973667684
-
Acetate mediates a microbiome-brain-β-cell axis to promote metabolic syndrome
-
Perry RJ, Peng L, Barry NA, Cline GW, Zhang D, Cardone RL, et al. Acetate mediates a microbiome-brain-β-cell axis to promote metabolic syndrome. Nature. 2016;534:213-7. http://www.ncbi.nlm.nih.gov/pubmed/27279214.
-
(2016)
Nature.
, vol.534
, pp. 213-217
-
-
Perry, R.J.1
Peng, L.2
Barry, N.A.3
Cline, G.W.4
Zhang, D.5
Cardone, R.L.6
-
46
-
-
84937046632
-
The genetic architecture of NAFLD among inbred strains of mice
-
Hui ST, Parks BW, Org E, Norheim F, Che N, Pan C, et al. The genetic architecture of NAFLD among inbred strains of mice. Elife. 2015;4. http://www.ncbi.nlm.nih.gov/pubmed/26067236.
-
(2015)
Elife
, pp. 4
-
-
Hui, S.T.1
Parks, B.W.2
Org, E.3
Norheim, F.4
Che, N.5
Pan, C.6
-
47
-
-
30744446461
-
The use of fatty acid biomarkers to reflect dietary intake
-
Baylin A, Campos H. The use of fatty acid biomarkers to reflect dietary intake. Curr Opin Lipidol. 2006;17:22-7. http://www.ncbi.nlm.nih.gov/pubmed/16407712.
-
(2006)
Curr Opin Lipidol.
, vol.17
, pp. 22-27
-
-
Baylin, A.1
Campos, H.2
-
48
-
-
84893013094
-
High-fat diet alters gut microbiota physiology in mice
-
Daniel H, Gholami AM, Berry D, Desmarchelier C, Hahne H, Loh G, et al. High-fat diet alters gut microbiota physiology in mice. ISME J. 2014;8:295-308. http://www.nature.com/doifinder/10.1038/ismej.2013.155.
-
(2014)
ISME J.
, vol.8
, pp. 295-308
-
-
Daniel, H.1
Gholami, A.M.2
Berry, D.3
Desmarchelier, C.4
Hahne, H.5
Loh, G.6
-
49
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014;505:559-63. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3957428&tool=pmcentrez&rendertype=abstract.
-
(2014)
Nature.
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
-
50
-
-
84942155034
-
Fatty acids from diet and microbiota regulate energy metabolism
-
Alcock J, Lin HC. Fatty acids from diet and microbiota regulate energy metabolism. F1000Research. 2015;4:738. http://www.ncbi.nlm.nih.gov/pubmed/27006755.
-
(2015)
F1000Research
, vol.4
, pp. 738
-
-
Alcock, J.1
Lin, H.C.2
-
52
-
-
0036202677
-
Substituting dietary saturated fat with polyunsaturated fat changes abdominal fat distribution and improves insulin sensitivity
-
Summers LKM, Fielding BA, Bradshaw HA, Ilic V, Beysen C, Clark ML, et al. Substituting dietary saturated fat with polyunsaturated fat changes abdominal fat distribution and improves insulin sensitivity. Diabetologia. 2002;45:369-77. http://www.ncbi.nlm.nih.gov/pubmed/11914742.
-
(2002)
Diabetologia.
, vol.45
, pp. 369-377
-
-
Summers, L.K.M.1
Fielding, B.A.2
Bradshaw, H.A.3
Ilic, V.4
Beysen, C.5
Clark, M.L.6
-
53
-
-
84938803690
-
Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing
-
Kasai C, Sugimoto K, Moritani I, Tanaka J, Oya Y, Inoue H, et al. Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing. BMC Gastroenterol. 2015;15:100. http://www.ncbi.nlm.nih.gov/pubmed/26261039.
-
(2015)
BMC Gastroenterol.
, vol.15
, pp. 100
-
-
Kasai, C.1
Sugimoto, K.2
Moritani, I.3
Tanaka, J.4
Oya, Y.5
Inoue, H.6
-
54
-
-
84908554334
-
Bacterial protein signals are associated with Crohn's disease
-
Juste C, Kreil DP, Beauvallet C, Guillot A, Vaca S, Carapito C, et al. Bacterial protein signals are associated with Crohn's disease. Gut. 2014;63:1566-77. http://www.ncbi.nlm.nih.gov/pubmed/24436141.
-
(2014)
Gut.
, vol.63
, pp. 1566-1577
-
-
Juste, C.1
Kreil, D.P.2
Beauvallet, C.3
Guillot, A.4
Vaca, S.5
Carapito, C.6
-
55
-
-
84989832355
-
The effect of host genetics on the gut microbiome
-
Bonder MJ, Kurilshikov A, Tigchelaar EF, Mujagic Z, Imhann F, Vila AV, et al. The effect of host genetics on the gut microbiome. Nat Genet. 2016. http://www.ncbi.nlm.nih.gov/pubmed/27694959
-
(2016)
Nat Genet
-
-
Bonder, M.J.1
Kurilshikov, A.2
Tigchelaar, E.F.3
Mujagic, Z.4
Imhann, F.5
Vila, A.V.6
-
56
-
-
84927697837
-
A single genus in the gut microbiome reflects host preference and specificity
-
Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, et al. A single genus in the gut microbiome reflects host preference and specificity. ISME J. 2015;9:90-100. http://www.ncbi.nlm.nih.gov/pubmed/24936765.
-
(2015)
ISME J.
, vol.9
, pp. 90-100
-
-
Eren, A.M.1
Sogin, M.L.2
Morrison, H.G.3
Vineis, J.H.4
Fisher, J.C.5
Newton, R.J.6
-
57
-
-
84893686882
-
Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships
-
McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, et al. Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships. Microbiome. 2013;1:17. http://www.ncbi.nlm.nih.gov/pubmed/24450808.
-
(2013)
Microbiome.
, vol.1
, pp. 17
-
-
McHardy, I.H.1
Goudarzi, M.2
Tong, M.3
Ruegger, P.M.4
Schwager, E.5
Weger, J.R.6
-
58
-
-
84899535363
-
Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics
-
Poretsky R, Rodriguez-R LM, Luo C, Tsementzi D, Konstantinidis KT, Costello E, et al. Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics. PLoS One. 2014;9, e93827. http://dx.plos.org/10.1371/journal.pone.0093827.
-
(2014)
PLoS One.
, vol.9
-
-
Poretsky, R.1
Rodriguez-R, L.M.2
Luo, C.3
Tsementzi, D.4
Konstantinidis, K.T.5
Costello, E.6
-
59
-
-
84910096224
-
Human genetics shape the gut microbiome
-
Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, et al. Human genetics shape the gut microbiome. Cell. 2014;159:789-99. http://www.sciencedirect.com/science/article/pii/S0092867414012410.
-
(2014)
Cell.
, vol.159
, pp. 789-799
-
-
Goodrich, J.K.1
Waters, J.L.2
Poole, A.C.3
Sutter, J.L.4
Koren, O.5
Blekhman, R.6
-
60
-
-
84877967581
-
The effect of saturated fatty acids on methanogenesis and cell viability of Methanobrevibacter ruminantium
-
Zhou X, Meile L, Kreuzer M, Zeitz JO. The effect of saturated fatty acids on methanogenesis and cell viability of Methanobrevibacter ruminantium. Archaea. 2013;2013:106916. http://www.ncbi.nlm.nih.gov/pubmed/23710130.
-
(2013)
Archaea.
, vol.2013
, pp. 106916
-
-
Zhou, X.1
Meile, L.2
Kreuzer, M.3
Zeitz, J.O.4
-
61
-
-
84905276988
-
Individual diet has sex-dependent effects on vertebrate gut microbiota
-
Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, et al. Individual diet has sex-dependent effects on vertebrate gut microbiota. Nat Commun. 2014;5:4500. http://www.ncbi.nlm.nih.gov/pubmed/25072318.
-
(2014)
Nat Commun.
, vol.5
, pp. 4500
-
-
Bolnick, D.I.1
Snowberg, L.K.2
Hirsch, P.E.3
Lauber, C.L.4
Org, E.5
Parks, B.6
-
62
-
-
84978628163
-
Sex differences and hormonal effects on gut microbiota composition in mice
-
Org E, Mehrabian M, Parks BW, Shipkova P, Liu X, Drake TA, et al. Sex differences and hormonal effects on gut microbiota composition in mice. Gut Microbes. 2016;7:313-22. http://www.ncbi.nlm.nih.gov/pubmed/27355107.
-
(2016)
Gut Microbes.
, vol.7
, pp. 313-322
-
-
Org, E.1
Mehrabian, M.2
Parks, B.W.3
Shipkova, P.4
Liu, X.5
Drake, T.A.6
-
63
-
-
84971228909
-
Intestinal microbiota is influenced by gender and body mass index
-
Haro C, Rangel-Zúñiga OA, Alcalá-Díaz JF, Gómez-Delgado F, Pérez-Martínez P, Delgado-Lista J, et al. Intestinal microbiota is influenced by gender and body mass index. PLoS One. 2016;11, e0154090. http://www.ncbi.nlm.nih.gov/pubmed/27228093.
-
(2016)
PLoS One.
, vol.11
-
-
Haro, C.1
Rangel-Zúñiga, O.A.2
Alcalá-Díaz, J.F.3
Gómez-Delgado, F.4
Pérez-Martínez, P.5
Delgado-Lista, J.6
-
64
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335-6. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3156573&tool=pmcentrez&rendertype=abstract.
-
(2010)
Nat Methods.
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
65
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods. 2013;10:57-9. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3531572&tool=pmcentrez&rendertype=abstract.
-
(2013)
Nat Methods.
, vol.10
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
-
66
-
-
77952294607
-
Quality measures for protein alignment benchmarks
-
Edgar RC. Quality measures for protein alignment benchmarks. Nucleic Acids Res. 2010;38:2145-53. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2853116&tool=pmcentrez&rendertype=abstract.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2145-2153
-
-
Edgar, R.C.1
-
67
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012;6:610-8. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3280142&tool=pmcentrez&rendertype=abstract.
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
-
68
-
-
84929429714
-
Metabolite profiling and cardiovascular event risk: a prospective study of 3 population-based cohorts
-
Würtz P, Havulinna AS, Soininen P, Tynkkynen T, Prieto-Merino D, Tillin T, et al. Metabolite profiling and cardiovascular event risk: a prospective study of 3 population-based cohorts. Circulation. 2015;131:774-85. http://www.ncbi.nlm.nih.gov/pubmed/25573147.
-
(2015)
Circulation.
, vol.131
, pp. 774-785
-
-
Würtz, P.1
Havulinna, A.S.2
Soininen, P.3
Tynkkynen, T.4
Prieto-Merino, D.5
Tillin, T.6
-
69
-
-
84951175436
-
The biomarker GlycA is associated with chronic inflammation and predicts long-term risk of severe infection
-
Ritchie SC, Würtz P, Nath AP, Abraham G, Havulinna AS, Fearnley LG, et al. The biomarker GlycA is associated with chronic inflammation and predicts long-term risk of severe infection. Cell Syst. 2015;1:293-301. http://www.ncbi.nlm.nih.gov/pubmed/27136058.
-
(2015)
Cell Syst.
, vol.1
, pp. 293-301
-
-
Ritchie, S.C.1
Würtz, P.2
Nath, A.P.3
Abraham, G.4
Havulinna, A.S.5
Fearnley, L.G.6
-
70
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis
-
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 2008;9:559. http://www.ncbi.nlm.nih.gov/pubmed/19114008.
-
(2008)
BMC Bioinformatics.
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
71
-
-
40049099114
-
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
-
Langfelder P, Zhang B, Horvath S. Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics. 2008;24:719-20. http://www.ncbi.nlm.nih.gov/pubmed/18024473.
-
(2008)
Bioinformatics.
, vol.24
, pp. 719-720
-
-
Langfelder, P.1
Zhang, B.2
Horvath, S.3
|