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Volumn 62, Issue 10, 2013, Pages 3341-3349

Assessing the human gut microbiota in metabolic diseases

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; PHOSPHOTRANSFERASE; RNA 16S;

EID: 84891524250     PISSN: 00121797     EISSN: 1939327X     Source Type: Journal    
DOI: 10.2337/db13-0844     Document Type: Review
Times cited : (361)

References (86)
  • 3
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • O'Hara AM, Shanahan F. The gut flora as a forgotten organ. EMBO Rep 2006;7:688-693
    • (2006) EMBO Rep , vol.7 , pp. 688-693
    • O'hara, A.M.1    Shanahan, F.2
  • 4
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • MetaHIT Consortium
    • Qin J, Li R, Raes J, et al.; MetaHIT Consortium. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010;464: 59-65
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3
  • 5
    • 84876414806 scopus 로고    scopus 로고
    • The gut microbiota-masters of host development and physiology
    • Sommer F, Bäckhed F. The gut microbiota-masters of host development and physiology. Nat Rev Microbiol 2013;11:227-238
    • (2013) Nat Rev Microbiol , vol.11 , pp. 227-238
    • Sommer, F.1    Bäckhed, F.2
  • 6
    • 84866168894 scopus 로고    scopus 로고
    • Functional interactions between the gut microbiota and host metabolism
    • Tremaroli V, Bäckhed F. Functional interactions between the gut microbiota and host metabolism. Nature 2012;489:242-249
    • (2012) Nature , vol.489 , pp. 242-249
    • Tremaroli, V.1    Bäckhed, F.2
  • 8
    • 20544444045 scopus 로고    scopus 로고
    • Diversity of the human intestinal microbial flora
    • Eckburg PB, Bik EM, Bernstein CN, et al. Diversity of the human intestinal microbial flora. Science 2005;308:1635-1638
    • (2005) Science , vol.308 , pp. 1635-1638
    • Eckburg, P.B.1    Bik, E.M.2    Bernstein, C.N.3
  • 9
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko T, Rey FE, Manary MJ, et al. Human gut microbiome viewed across age and geography. Nature 2012;486:222-227
    • (2012) Nature , vol.486 , pp. 222-227
    • Yatsunenko, T.1    Rey, F.E.2    Manary, M.J.3
  • 10
    • 77954627922 scopus 로고    scopus 로고
    • Viruses in the faecal microbiota of monozygotic twins and their mothers
    • Reyes A, Haynes M, Hanson N, et al. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 2010;466:334-338
    • (2010) Nature , vol.466 , pp. 334-338
    • Reyes, A.1    Haynes, M.2    Hanson, N.3
  • 11
    • 77952674529 scopus 로고    scopus 로고
    • Role of gut microbiota in early infant development
    • Wall R, Ross RP, Ryan CA, et al. Role of gut microbiota in early infant development. Clin Med Pediatr 2009;3:45-54
    • (2009) Clin Med Pediatr , vol.3 , pp. 45-54
    • Wall, R.1    Ross, R.P.2    Ryan, C.A.3
  • 12
    • 79952763661 scopus 로고    scopus 로고
    • Succession of microbial consortia in the developing infant gut microbiome
    • Koenig JE, Spor A, Scalfone N, et al. Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci U S A 2011;108 (Suppl. 1):4578-4585
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.SUPPL. 1 , pp. 4578-4585
    • Koenig, J.E.1    Spor, A.2    Scalfone, N.3
  • 13
    • 84864722033 scopus 로고    scopus 로고
    • Gut microbiota composition correlates with diet and health in the elderly
    • Claesson MJ, Jeffery IB, Conde S, et al. Gut microbiota composition correlates with diet and health in the elderly. Nature 2012;488:178-184
    • (2012) Nature , vol.488 , pp. 178-184
    • Claesson, M.J.1    Jeffery, I.B.2    Conde, S.3
  • 14
    • 46249085739 scopus 로고    scopus 로고
    • Evolution of mammals and their gut microbes
    • Ley RE, Hamady M, Lozupone C, et al. Evolution of mammals and their gut microbes. Science 2008;320:1647-1651
    • (2008) Science , vol.320 , pp. 1647-1651
    • Ley, R.E.1    Hamady, M.2    Lozupone, C.3
  • 15
    • 79956301905 scopus 로고    scopus 로고
    • Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
    • Muegge BD, Kuczynski J, Knights D, et al. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 2011;332:970-974
    • (2011) Science , vol.332 , pp. 970-974
    • Muegge, B.D.1    Kuczynski, J.2    Knights, D.3
  • 16
    • 84877331372 scopus 로고    scopus 로고
    • Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
    • Koeth RA, Wang Z, Levison BS, et al. Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis. Nat Med 2013;19:576-585
    • (2013) Nat Med , vol.19 , pp. 576-585
    • Koeth, R.A.1    Wang, Z.2    Levison, B.S.3
  • 17
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu GD, Chen J, Hoffmann C, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 2011;334:105-108
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3
  • 18
    • 77957075815 scopus 로고    scopus 로고
    • Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
    • De Filippo C, Cavalieri D, Di Paola M, et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A 2010;107:14691-14696
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 14691-14696
    • De Filippo, C.1    Cavalieri, D.2    Di Paola, M.3
  • 19
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: Human gut microbes associated with obesity
    • Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology: human gut microbes associated with obesity. Nature 2006;444:1022-1023
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 20
    • 56549122798 scopus 로고    scopus 로고
    • Human colonic microbiota associated with diet, obesity and weight loss
    • Duncan SH, Lobley GE, Holtrop G, et al. Human colonic microbiota associated with diet, obesity and weight loss. Int J Obes (Lond) 2008;32: 1720-1724
    • (2008) Int J Obes (Lond) , vol.32 , pp. 1720-1724
    • Duncan, S.H.1    Lobley, G.E.2    Holtrop, G.3
  • 21
    • 73949137604 scopus 로고    scopus 로고
    • Microbiota and SCFA in lean and overweight healthy subjects
    • Schwiertz A, Taras D, Schäfer K, et al. Microbiota and SCFA in lean and overweight healthy subjects. Obesity (Silver Spring) 2010;18:190-195
    • (2010) Obesity (Silver Spring) , vol.18 , pp. 190-195
    • Schwiertz, A.1    Taras, D.2    Schäfer, K.3
  • 22
    • 40549088230 scopus 로고    scopus 로고
    • Early differences in fecal microbiota composition in children may predict overweight
    • Kalliomäki M, Collado MC, Salminen S, Isolauri E. Early differences in fecal microbiota composition in children may predict overweight. Am J Clin Nutr 2008;87:534-538
    • (2008) Am J Clin Nutr , vol.87 , pp. 534-538
    • Kalliomäki, M.1    Collado, M.C.2    Salminen, S.3    Isolauri, E.4
  • 23
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh PJ, Hamady M, Yatsunenko T, et al. A core gut microbiome in obese and lean twins. Nature 2009;457:480-484
    • (2009) Nature , vol.457 , pp. 480-484
    • Turnbaugh, P.J.1    Hamady, M.2    Yatsunenko, T.3
  • 25
    • 41849127118 scopus 로고    scopus 로고
    • Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
    • Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 2008;3:213-223
    • (2008) Cell Host Microbe , vol.3 , pp. 213-223
    • Turnbaugh, P.J.1    Bäckhed, F.2    Fulton, L.3    Gordon, J.I.4
  • 26
    • 8144226856 scopus 로고    scopus 로고
    • The gut microbiota as an environmental factor that regulates fat storage
    • Bäckhed F, Ding H, Wang T, et al. The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci U S A 2004;101:15718-15723
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 15718-15723
    • Bäckhed, F.1    Ding, H.2    Wang, T.3
  • 28
    • 77949393654 scopus 로고    scopus 로고
    • Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
    • Larsen N, Vogensen FK, van den Berg FW, et al. Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS ONE 2010;5:e9085
    • (2010) PLoS ONE , vol.5
    • Larsen, N.1    Vogensen, F.K.2    Van Den Berg, F.W.3
  • 29
    • 34347399563 scopus 로고    scopus 로고
    • Metabolic endotoxemia initiates obesity and insulin resistance
    • Cani PD, Amar J, Iglesias MA, et al. Metabolic endotoxemia initiates obesity and insulin resistance. Diabetes 2007;56:1761-1772
    • (2007) Diabetes , vol.56 , pp. 1761-1772
    • Cani, P.D.1    Amar, J.2    Iglesias, M.A.3
  • 30
    • 33947182436 scopus 로고    scopus 로고
    • Lipopolysaccharide activates an innate immune system response in human adipose tissue in obesity and type 2 diabetes
    • Creely SJ, McTernan PG, Kusminski CM, et al. Lipopolysaccharide activates an innate immune system response in human adipose tissue in obesity and type 2 diabetes. Am J Physiol Endocrinol Metab 2007;292:E740-E747
    • (2007) Am J Physiol Endocrinol Metab , vol.292
    • Creely, S.J.1    McTernan, P.G.2    Kusminski, C.M.3
  • 31
    • 84868687011 scopus 로고    scopus 로고
    • Gut-derived lipopolysaccharide augments adipose macrophage accumulation but is not essential for impaired glucose or insulin tolerance in mice
    • Caesar R, Reigstad CS, Bäckhed HK, et al. Gut-derived lipopolysaccharide augments adipose macrophage accumulation but is not essential for impaired glucose or insulin tolerance in mice. Gut 2012;61:1701-1707
    • (2012) Gut , vol.61 , pp. 1701-1707
    • Caesar, R.1    Reigstad, C.S.2    Bäckhed, H.K.3
  • 32
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin J, Li Y, Cai Z, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 2012;490:55-60
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1    Li, Y.2    Cai, Z.3
  • 33
    • 84878709716 scopus 로고    scopus 로고
    • Gut metagenome in European women with normal, impaired and diabeteic glucose control
    • Karlsson FH, Tremaroli V, Nookaew I, et al. Gut metagenome in European women with normal, impaired and diabeteic glucose control. Nature 2013; 498:99-103
    • (2013) Nature , vol.498 , pp. 99-103
    • Karlsson, F.H.1    Tremaroli, V.2    Nookaew, I.3
  • 34
    • 10844295087 scopus 로고    scopus 로고
    • Lifestyle, diabetes, and cardiovascular risk factors 10 years after bariatric surgery
    • Swedish Obese Subjects Study Scientific Group
    • Sjöström L, Lindroos AK, Peltonen M, et al.; Swedish Obese Subjects Study Scientific Group. Lifestyle, diabetes, and cardiovascular risk factors 10 years after bariatric surgery. N Engl J Med 2004;351:2683-2693
    • (2004) N Engl J Med , vol.351 , pp. 2683-2693
    • Sjöström, L.1    Lindroos, A.K.2    Peltonen, M.3
  • 35
    • 34548090763 scopus 로고    scopus 로고
    • Effects of bariatric surgery on mortality in Swedish obese subjects
    • Swedish Obese Subjects Study
    • Sjöström L, Narbro K, Sjöström CD, et al.; Swedish Obese Subjects Study. Effects of bariatric surgery on mortality in Swedish obese subjects. N Engl J Med 2007;357:741-752
    • (2007) N Engl J Med , vol.357 , pp. 741-752
    • Sjöström, L.1    Narbro, K.2    Sjöström, C.D.3
  • 36
    • 78650037263 scopus 로고    scopus 로고
    • Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: Links with metabolic and low-grade inflammation markers
    • Furet JP, Kong LC, Tap J, et al. Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers. Diabetes 2010;59:3049-3057
    • (2010) Diabetes , vol.59 , pp. 3049-3057
    • Furet, J.P.1    Kong, L.C.2    Tap, J.3
  • 37
    • 60549086580 scopus 로고    scopus 로고
    • Human gut microbiota in obesity and after gastric bypass
    • Zhang H, DiBaise JK, Zuccolo A, et al. Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci U S A 2009;106:2365-2370
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 2365-2370
    • Zhang, H.1    Dibaise, J.K.2    Zuccolo, A.3
  • 38
    • 80051545971 scopus 로고    scopus 로고
    • Metabolic surgery profoundly influences gut microbial-host metabolic cross-talk
    • Li JV, Ashrafian H, Bueter M, et al. Metabolic surgery profoundly influences gut microbial-host metabolic cross-talk. Gut 2011;60:1214-1223
    • (2011) Gut , vol.60 , pp. 1214-1223
    • Li, J.V.1    Ashrafian, H.2    Bueter, M.3
  • 40
    • 84866738529 scopus 로고    scopus 로고
    • Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome
    • e7
    • Vrieze A, Van Nood E, Holleman F, et al. Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterology 2012;143:913-916.e7
    • (2012) Gastroenterology , vol.143 , pp. 913-916
    • Vrieze, A.1    Van Nood, E.2    Holleman, F.3
  • 41
    • 56349115784 scopus 로고    scopus 로고
    • Type 1 diabetes: Lessons for other autoimmune diseases?
    • Harrison LC, Honeyman MC, Morahan G, et al. Type 1 diabetes: lessons for other autoimmune diseases? J Autoimmun 2008;31:306-310
    • (2008) J Autoimmun , vol.31 , pp. 306-310
    • Harrison, L.C.1    Honeyman, M.C.2    Morahan, G.3
  • 42
    • 80054722148 scopus 로고    scopus 로고
    • Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes
    • Brown CT, Davis-Richardson AG, Giongo A, et al. Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS ONE 2011;6:e25792
    • (2011) PLoS ONE , vol.6
    • Brown, C.T.1    Davis-Richardson, A.G.2    Giongo, A.3
  • 43
    • 79960983258 scopus 로고    scopus 로고
    • Naturally transmitted segmented filamentous bacteria segregate with diabetes protection in nonobese diabetic mice
    • Kriegel MA, Sefik E, Hill JA, Wu HJ, Benoist C, Mathis D. Naturally transmitted segmented filamentous bacteria segregate with diabetes protection in nonobese diabetic mice. Proc Natl Acad Sci U S A 2011;108:11548-11553
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 11548-11553
    • Kriegel, M.A.1    Sefik, E.2    Hill, J.A.3    Wu, H.J.4    Benoist, C.5    Mathis, D.6
  • 44
    • 59649105735 scopus 로고    scopus 로고
    • Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes
    • Oresic M, Simell S, Sysi-Aho M, et al. Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes. J Exp Med 2008;205:2975-2984
    • (2008) J Exp Med , vol.205 , pp. 2975-2984
    • Oresic, M.1    Simell, S.2    Sysi-Aho, M.3
  • 45
    • 79952758083 scopus 로고    scopus 로고
    • Human oral, gut, and plaque microbiota in patients with atherosclerosis
    • Koren O, Spor A, Felin J, et al. Human oral, gut, and plaque microbiota in patients with atherosclerosis. Proc Natl Acad Sci U S A 2011;108(Suppl. 1): 4592-4598
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.SUPPL. 1 , pp. 4592-4598
    • Koren, O.1    Spor, A.2    Felin, J.3
  • 46
    • 84871814687 scopus 로고    scopus 로고
    • Symptomatic atherosclerosis is associated with an altered gut metagenome
    • Karlsson FH, Fåk F, Nookaew I, et al. Symptomatic atherosclerosis is associated with an altered gut metagenome. Nat Commun 2012;3:1245
    • (2012) Nat Commun , vol.3 , pp. 1245
    • Karlsson, F.H.1    Fåk, F.2    Nookaew, I.3
  • 47
    • 79953733693 scopus 로고    scopus 로고
    • Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
    • Wang Z, Klipfell E, Bennett BJ, et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 2011;472:57-63
    • (2011) Nature , vol.472 , pp. 57-63
    • Wang, Z.1    Klipfell, E.2    Bennett, B.J.3
  • 48
    • 84876563088 scopus 로고    scopus 로고
    • Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk
    • Tang WH, Wang Z, Levison BS, et al. Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk. N Engl J Med 2013;368:1575-1584
    • (2013) N Engl J Med , vol.368 , pp. 1575-1584
    • Tang, W.H.1    Wang, Z.2    Levison, B.S.3
  • 49
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese CR. Bacterial evolution. Microbiol Rev 1987;51:221-271
    • (1987) Microbiol Rev , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 50
    • 5644227319 scopus 로고    scopus 로고
    • Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases
    • Clarridge JE 3rd. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin Microbiol Rev 2004;17:840-862
    • (2004) Clin Microbiol Rev , vol.17 , pp. 840-862
    • Clarridge III, J.E.1
  • 52
    • 33846404490 scopus 로고    scopus 로고
    • Optimization of terminal restriction fragment polymorphism (TRFLP) analysis of human gut microbiota
    • Li F, Hullar MA, Lampe JW. Optimization of terminal restriction fragment polymorphism (TRFLP) analysis of human gut microbiota. J Microbiol Methods 2007;68:303-311
    • (2007) J Microbiol Methods , vol.68 , pp. 303-311
    • Li, F.1    Hullar, M.A.2    Lampe, J.W.3
  • 53
    • 67649945513 scopus 로고    scopus 로고
    • Development and application of the human intestinal tract chip, a phylogenetic microarray: Analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
    • Rajilic-Stojanovic M, Heilig HG, Molenaar D, et al. Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol 2009;11:1736-1751
    • (2009) Environ Microbiol , vol.11 , pp. 1736-1751
    • Rajilic-Stojanovic, M.1    Heilig, H.G.2    Molenaar, D.3
  • 54
    • 33747073504 scopus 로고    scopus 로고
    • Microbial diversity in the deep sea and the underexplored "rare biosphere."
    • Sogin ML, Morrison HG, Huber JA, et al. Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc Natl Acad Sci U S A 2006; 103:12115-12120
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 12115-12120
    • Sogin, M.L.1    Morrison, H.G.2    Huber, J.A.3
  • 56
    • 79952005915 scopus 로고    scopus 로고
    • Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
    • Caporaso JG, Lauber CL, Walters WA, et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A 2011;108(Suppl. 1):4516-4522
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.SUPPL. 1 , pp. 4516-4522
    • Caporaso, J.G.1    Lauber, C.L.2    Walters, W.A.3
  • 57
    • 54549106898 scopus 로고    scopus 로고
    • Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
    • Liu Z, DeSantis TZ, Andersen GL, Knight R. Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 2008;36:e120
    • (2008) Nucleic Acids Res , vol.36
    • Liu, Z.1    Desantis, T.Z.2    Andersen, G.L.3    Knight, R.4
  • 59
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010;7:335-336
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 60
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009;75:7537-7541
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3
  • 61
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimerachecked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N, et al. Greengenes, a chimerachecked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006;72:5069-5072
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5069-5072
    • Desantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3
  • 62
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 2007;35:7188-7196
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3
  • 63
    • 79952124952 scopus 로고    scopus 로고
    • Taxonomic metagenome sequence assignment with structured output models
    • Patil KR, Haider P, Pope PB, et al. Taxonomic metagenome sequence assignment with structured output models. Nat Methods 2011;8:191-192
    • (2011) Nat Methods , vol.8 , pp. 191-192
    • Patil, K.R.1    Haider, P.2    Pope, P.B.3
  • 66
    • 84862189439 scopus 로고    scopus 로고
    • Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities
    • Martin J, Sykes S, Young S, et al. Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities. PLoS ONE 2012;7:e36427
    • (2012) PLoS ONE , vol.7
    • Martin, J.1    Sykes, S.2    Young, S.3
  • 67
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li R, Zhu H, Ruan J, et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2010;20:265-272
    • (2010) Genome Res , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3
  • 68
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008;18:821-829
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 69
    • 84867397631 scopus 로고    scopus 로고
    • MetaVelvet: An extension of Velvet assembler to de novo metagenome assembly from short sequence reads
    • Namiki T, Hachiya T, Tanaka H, Sakakibara Y. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucleic Acids Res 2012;40:e155
    • (2012) Nucleic Acids Res , vol.40
    • Namiki, T.1    Hachiya, T.2    Tanaka, H.3    Sakakibara, Y.4
  • 70
    • 84867634981 scopus 로고    scopus 로고
    • MOCAT: A metagenomics assembly and gene prediction toolkit
    • Kultima JR, Sunagawa S, Li J, et al. MOCAT: a metagenomics assembly and gene prediction toolkit. PLoS ONE 2012;7:e47656
    • (2012) PLoS ONE , vol.7
    • Kultima, J.R.1    Sunagawa, S.2    Li, J.3
  • 71
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 2010;38(Database issue):D355-D360
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISSUE
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 73
  • 75
    • 84864037467 scopus 로고    scopus 로고
    • Metabolic reconstruction for metagenomic data and its application to the human microbiome
    • Abubucker S, Segata N, Goll J, et al. Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLOS Comput Biol 2012;8:e1002358
    • (2012) PLOS Comput Biol , vol.8
    • Abubucker, S.1    Segata, N.2    Goll, J.3
  • 78
    • 38549139537 scopus 로고    scopus 로고
    • IMG/M: A data management and analysis system for metagenomes
    • Markowitz VM, Ivanova NN, Szeto E, et al. IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res 2008;36:D534-D538
    • (2008) Nucleic Acids Res , vol.36
    • Markowitz, V.M.1    Ivanova, N.N.2    Szeto, E.3
  • 79
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer F, Paarmann D, D'Souza M, et al. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008;9:386
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'souza, M.3
  • 80
    • 84883384697 scopus 로고    scopus 로고
    • Genome-scale modeling of human metabolism - A systems biology approach
    • April [Epub ahead of print]
    • Mardinoglu A, Gatto F, Nielsen J. Genome-scale modeling of human metabolism-a systems biology approach. Biotechnol J 24 April 2013 [Epub ahead of print]
    • (2013) Biotechnol J , vol.24
    • Mardinoglu, A.1    Gatto, F.2    Nielsen, J.3
  • 84
    • 79955025122 scopus 로고    scopus 로고
    • Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
    • Goodman AL, Kallstrom G, Faith JJ, et al. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Proc Natl Acad Sci U S A 2011;108:6252-6257
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 6252-6257
    • Goodman, A.L.1    Kallstrom, G.2    Faith, J.J.3
  • 85
    • 84864614787 scopus 로고    scopus 로고
    • Host remodeling of the gut microbiome and metabolic changes during pregnancy
    • Koren O, Goodrich JK, Cullender TC, et al. Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell 2012;150: 470-480
    • (2012) Cell , vol.150 , pp. 470-480
    • Koren, O.1    Goodrich, J.K.2    Cullender, T.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.