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Volumn 9, Issue 4, 2014, Pages

Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; FRESH WATER;

EID: 84899535363     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0093827     Document Type: Article
Times cited : (461)

References (62)
  • 1
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, et al. (2009) Bacterial community variation in human body habitats across space and time. Science 326: 1694-1697.
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3    Fierer, N.4    Gordon, J.I.5
  • 6
    • 69549112742 scopus 로고    scopus 로고
    • Accurate determination of microbial diversity from 454 pyrosequencing data
    • Quince C, Lanzen A, Curtis TP, Davenport RJ, Hall N, et al. (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 6: 639-641.
    • (2009) Nat Methods , vol.6 , pp. 639-641
    • Quince, C.1    Lanzen, A.2    Curtis, T.P.3    Davenport, R.J.4    Hall, N.5
  • 8
    • 68549130740 scopus 로고    scopus 로고
    • Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys
    • Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, et al. (2009) Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol 75: 5227-5236.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5227-5236
    • Youssef, N.1    Sheik, C.S.2    Krumholz, L.R.3    Najar, F.Z.4    Roe, B.A.5
  • 9
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
    • (2010) Environ Microbiol , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 12
    • 0035174578 scopus 로고    scopus 로고
    • The species concept for prokaryotes
    • DOI 10.1016/S0168-6445(00)00040-1, PII S0168644500000401
    • Rossello-Mora R, Amann R (2001) The species concept for prokaryotes. FEMS Microbiol Rev 25: 39-67. (Pubitemid 32057196)
    • (2001) FEMS Microbiology Reviews , vol.25 , Issue.1 , pp. 39-67
    • Rossello-Mora, R.1    Amann, R.2
  • 13
    • 84878647680 scopus 로고    scopus 로고
    • Comparative metagenomic and rRNA microbial diversity characterization using Archaeal and Bacterial synthetic communities
    • Shakya M, Quince C, Campbell JH, Yang ZK, Schadt CW, et al. (2013) Comparative metagenomic and rRNA microbial diversity characterization using Archaeal and Bacterial synthetic communities. Environ Microbiol 15: 1882-1899.
    • (2013) Environ Microbiol , vol.15 , pp. 1882-1899
    • Shakya, M.1    Quince, C.2    Campbell, J.H.3    Yang, Z.K.4    Schadt, C.W.5
  • 15
    • 78649732106 scopus 로고    scopus 로고
    • The taxonomic and functional diversity of microbes at a temperate coastal site: A 'multi-omic' study of seasonal and diel temporal variation
    • Gilbert JA, Field D, Swift P, Thomas S, Cummings D, et al. (2010) The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation. PLoS One 5: e15545.
    • (2010) PLoS One , vol.5
    • Gilbert, J.A.1    Field, D.2    Swift, P.3    Thomas, S.4    Cummings, D.5
  • 16
    • 77952670727 scopus 로고    scopus 로고
    • Viral and microbial community dynamics in four aquatic environments
    • Rodriguez-Brito B, Li LL, Wegley L, Furlan M, Angly F, et al. (2010) Viral and microbial community dynamics in four aquatic environments. ISME J 4: 739-751.
    • (2010) ISME J , vol.4 , pp. 739-751
    • Rodriguez-Brito, B.1    Li, L.L.2    Wegley, L.3    Furlan, M.4    Angly, F.5
  • 17
    • 84860672197 scopus 로고    scopus 로고
    • A comparative evaluation of sequence classification programs
    • Bazinet AL, Cummings MP (2012) A comparative evaluation of sequence classification programs. BMC Bioinformatics 13: 92.
    • (2012) BMC Bioinformatics , vol.13 , pp. 92
    • Bazinet, A.L.1    Cummings, M.P.2
  • 18
    • 79951694175 scopus 로고    scopus 로고
    • Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
    • doi:10.1186/gb-2011-12-2-r18
    • Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, et al. (2011) Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol 12 doi:10.1186/gb-2011-12-2-r18.
    • (2011) Genome Biol , vol.12
    • Aird, D.1    Ross, M.G.2    Chen, W.S.3    Danielsson, M.4    Fennell, T.5
  • 19
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • Gomez-Alvarez V, Teal TK, Schmidt TM (2009) Systematic artifacts in metagenomes from complex microbial communities. ISME J 3: 1314-1317.
    • (2009) ISME J , vol.3 , pp. 1314-1317
    • Gomez-Alvarez, V.1    Teal, T.K.2    Schmidt, T.M.3
  • 20
    • 80054852473 scopus 로고    scopus 로고
    • Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics
    • Shah N, Tang H, Doak TG, Ye Y (2011) Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics. Pac Symp Biocomput: 165-176.
    • (2011) Pac Symp Biocomput , pp. 165-176
    • Shah, N.1    Tang, H.2    Doak, T.G.3    Ye, Y.4
  • 21
    • 84858613358 scopus 로고    scopus 로고
    • Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
    • Steven B, Gallegos-Graves L, Starkenburg SR, Chain PS, Kuske CR (2012) Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study. Environ Microbiol Rep 4: 248-256.
    • (2012) Environ Microbiol Rep , vol.4 , pp. 248-256
    • Steven, B.1    Gallegos-Graves, L.2    Starkenburg, S.R.3    Chain, P.S.4    Kuske, C.R.5
  • 22
    • 84865709673 scopus 로고    scopus 로고
    • Temporal variability in the diversity and composition of stream bacterioplankton communities
    • Portillo MC, Anderson SP, Fierer N (2012) Temporal variability in the diversity and composition of stream bacterioplankton communities. Environ Microbiol 14: 2417-2428.
    • (2012) Environ Microbiol , vol.14 , pp. 2417-2428
    • Portillo, M.C.1    Anderson, S.P.2    Fierer, N.3
  • 23
    • 0347949986 scopus 로고    scopus 로고
    • Temporal Patterns in Bacterial Communities in Three Temperate Lakes of Different Trophic Status
    • DOI 10.1007/s00248-003-1008-9
    • Yannarell AC, Kent AD, Lauster GH, Kratz TK, Triplett EW (2003) Temporal patterns in bacterial communities in three temperate lakes of different trophic status. Microb Ecol 46: 391-405. (Pubitemid 38065847)
    • (2003) Microbial Ecology , vol.46 , Issue.4 , pp. 391-405
    • Yannarell, A.C.1    Kent, A.D.2    Lauster, G.H.3    Kratz, T.K.4    Triplett, E.W.5
  • 24
    • 0013456948 scopus 로고    scopus 로고
    • Seasonal patterns of the bacterioplankton community composition in a large mesotrophic lake
    • Zwisler W, Selje N, Simon M (2003) Seasonal patterns of the bacterioplankton community composition in a large mesotrophic lake. Aquat Microb Ecol 31: 211-225. (Pubitemid 36524257)
    • (2003) Aquatic Microbial Ecology , vol.31 , Issue.3 , pp. 211-225
    • Zwisler, W.1    Selje, N.2    Simon, M.3
  • 25
    • 84855951093 scopus 로고    scopus 로고
    • Coherent dynamics and association networks among lake bacterioplankton taxa
    • Eiler A, Heinrich F, Bertilsson S (2012) Coherent dynamics and association networks among lake bacterioplankton taxa. ISME J 6: 330-342.
    • (2012) ISME J , vol.6 , pp. 330-342
    • Eiler, A.1    Heinrich, F.2    Bertilsson, S.3
  • 26
    • 29144463361 scopus 로고    scopus 로고
    • Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time
    • DOI 10.1128/AEM.71.12.8201-8206.2005
    • Lindstrom ES, Kamst-Van Agterveld MP, Zwart G (2005) Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time. Appl Environ Microbiol 71: 8201-8206. (Pubitemid 41803945)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.12 , pp. 8201-8206
    • Lindstrom, E.S.1    Kamst-Van, A.M.P.2    Zwart, G.3
  • 27
    • 34547617665 scopus 로고    scopus 로고
    • Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment
    • DOI 10.1890/06-0387
    • Crump RC, Adams HE, Hobbie JE, Kling GW (2007) Biogeography of bacterioplankton in lakes and streams of an Arctic tundra catchment. Ecology 88: 1365-1378. (Pubitemid 351345212)
    • (2007) Ecology , vol.88 , Issue.6 , pp. 1365-1378
    • Crump, B.C.1    Adams, H.E.2    Hobbie, J.E.3    Kling, G.W.4
  • 28
    • 0033133461 scopus 로고    scopus 로고
    • Diversity of bacterial communities in Adirondack lakes: Do species assemblages reflect lake water chemistry?
    • Methe BA, Zehr JP (1999) Diversity of bacterial communities in Adirondack lakes: do species assemblages reflect lake water chemistry? Hydrobiologia 401: 77-96. (Pubitemid 129723678)
    • (1999) Hydrobiologia , vol.401 , pp. 77-96
    • Methe, B.A.1    Zehr, J.P.2
  • 29
    • 80052753042 scopus 로고    scopus 로고
    • Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem
    • Oh S, Caro-Quintero A, Tsementzi D, Deleon-Rodriguez N, Luo C, et al. (2011) Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem. Appl Environ Microbiol 77: 6000-6011.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 6000-6011
    • Oh, S.1    Caro-Quintero, A.2    Tsementzi, D.3    Deleon-Rodriguez, N.4    Luo, C.5
  • 33
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li R, Zhu H, Ruan J, Qian W, Fang X, et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20: 265-272.
    • (2010) Genome Res , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5
  • 34
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • DOI 10.1101/gr.074492.107
    • Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829. (Pubitemid 351645072)
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 35
    • 84858863014 scopus 로고    scopus 로고
    • Individual genome assembly from complex community short-read metagenomic datasets
    • Luo C, Tsementzi D, Kyrpides NC, Konstantinidis KT (2012) Individual genome assembly from complex community short-read metagenomic datasets. ISME J 6: 898-901.
    • (2012) ISME J , vol.6 , pp. 898-901
    • Luo, C.1    Tsementzi, D.2    Kyrpides, N.C.3    Konstantinidis, K.T.4
  • 36
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • Zhu W, Lomsadze A, Borodovsky M (2010) Ab initio gene identification in metagenomic sequences. Nucleic Acids Res 38: e132.
    • (2010) Nucleic Acids Res , vol.38
    • Zhu, W.1    Lomsadze, A.2    Borodovsky, M.3
  • 37
    • 84899584745 scopus 로고    scopus 로고
    • MyTaxa: An advanced taxonomic classifier for genomic and metagenomic sequences
    • Under revision
    • Luo C Konstantinidis KT (Under revision) MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences. Nuc Acids Res.
    • Nuc Acids Res
    • Luo, C.1    Konstantinidis, K.T.2
  • 38
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, et al. (2012) Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 6: 1621-1624.
    • (2012) ISME J , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1    Lauber, C.L.2    Walters, W.A.3    Berg-Lyons, D.4    Huntley, J.5
  • 39
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18: 117-143.
    • (1993) Aust J Ecol , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 40
    • 0002348293 scopus 로고
    • The Number of New Species, and the Increase in Population Coverage, When a Sample Is Increased
    • Good IJ, Toulmin GH (1956) The Number of New Species, and the Increase in Population Coverage, When a Sample Is Increased. Biometrika 43: 45-63.
    • (1956) Biometrika , vol.43 , pp. 45-63
    • Good, I.J.1    Toulmin, G.H.2
  • 41
    • 0141816854 scopus 로고    scopus 로고
    • Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones
    • Hahn MW (2003) Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones. Appl Environ Microbiol 69: 5248-5254.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5248-5254
    • Hahn, M.W.1
  • 43
    • 0344931860 scopus 로고    scopus 로고
    • Synechococcus and Prochlorococcus-like populations detected by flow cytometry in a eutrophic reservoir in summer
    • Corzo A, Jimenez-Gomez F, Gordillo FJL, Garcia-Ruiz R, Niell FX (1999) Synechococcus and Prochlorococcus-like populations detected by flow cytometry in a eutrophic reservoir in summer. J Plankton Res 21: 1575-1581. (Pubitemid 29390680)
    • (1999) Journal of Plankton Research , vol.21 , Issue.8 , pp. 1575-1581
    • Corzo, A.1    Jimenez-Gomez, F.2    Gordillo, F.J.L.3    Garcia-Ruiz, R.4    Niell, F.X.5
  • 44
    • 70449629426 scopus 로고    scopus 로고
    • Photosynthetic picoplankton in Lake Tanganyika: Biomass distribution patterns with depth, season and basin
    • Stenuite S, Tarbe A-L, Sarmento H, Unrein F, Pirlot S, et al. (2009) Photosynthetic picoplankton in Lake Tanganyika: biomass distribution patterns with depth, season and basin. J Plankton Res 31: 1531-1544.
    • (2009) J Plankton Res , vol.31 , pp. 1531-1544
    • Stenuite, S.1    Tarbe, A.-L.2    Sarmento, H.3    Unrein, F.4    Pirlot, S.5
  • 45
    • 84897693692 scopus 로고    scopus 로고
    • Nonpareil: A redundancy-based approach to. assess the level of coverage in metagenomic datasets
    • doi:10.1093/bioinformatics/btt584
    • Rodriguez-R L, Konstantinidis K (2013) Nonpareil: A redundancy-based approach to. assess the level of coverage in metagenomic datasets. Bioinformatics doi:10.1093/bioinformatics/btt584.
    • (2013) Bioinformatics
    • Rodriguez-R, L.1    Konstantinidis, K.2
  • 46
    • 1942443733 scopus 로고    scopus 로고
    • Divergence and Redundancy of 16S rRNA Sequences in Genomes with Multiple rrn Operons
    • DOI 10.1128/JB.186.9.2629-2635.2004
    • Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF (2004) Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J Bacteriol 186: 2629-2635. (Pubitemid 38525916)
    • (2004) Journal of Bacteriology , vol.186 , Issue.9 , pp. 2629-2635
    • Acinas, S.G.1    Marcelino, L.A.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 47
    • 35748954014 scopus 로고    scopus 로고
    • Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
    • DOI 10.1016/j.mib.2007.08.006, PII S1369527407001208, Antimicrobials/Genomics
    • Konstantinidis KT, Tiedje JM (2007) Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol 10: 504-509. (Pubitemid 350052687)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.5 , pp. 504-509
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 48
    • 84875832926 scopus 로고    scopus 로고
    • The binning of metagenomic contigs for microbial physiology of mixed cultures
    • Strous M, Kraft B, Bisdorf R, Tegetmeyer HE (2012) The binning of metagenomic contigs for microbial physiology of mixed cultures. Front Microbiol 3: 410.
    • (2012) Front Microbiol , vol.3 , pp. 410
    • Strous, M.1    Kraft, B.2    Bisdorf, R.3    Tegetmeyer, H.E.4
  • 49
    • 51349161191 scopus 로고    scopus 로고
    • High-resolution metagenomics targets specific functional types in complex microbial communities
    • Kalyuzhnaya MG, Lapidus A, Ivanova N, Copeland AC, McHardy AC, et al. (2008) High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol 26: 1029-1034.
    • (2008) Nat Biotechnol , vol.26 , pp. 1029-1034
    • Kalyuzhnaya, M.G.1    Lapidus, A.2    Ivanova, N.3    Copeland, A.C.4    McHardy, A.C.5
  • 50
    • 79551562225 scopus 로고    scopus 로고
    • PhylOTU: A high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data
    • Sharpton TJ, Riesenfeld SJ, Kembel SW, Ladau J, O'Dwyer JP, et al. (2011) PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data. PLoS Comput Biol 7: e1001061.
    • (2011) PLoS Comput Biol , vol.7
    • Sharpton, T.J.1    Riesenfeld, S.J.2    Kembel, S.W.3    Ladau, J.4    O'Dwyer, J.P.5
  • 51
    • 79956041561 scopus 로고    scopus 로고
    • EMIRGE: Reconstruction of full-length ribosomal genes from microbial community short read sequencing data
    • Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF (2011) EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biol 12: R44.
    • (2011) Genome Biol , vol.12
    • Miller, C.S.1    Baker, B.J.2    Thomas, B.C.3    Singer, S.W.4    Banfield, J.F.5
  • 52
    • 84871979584 scopus 로고    scopus 로고
    • Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
    • Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, et al. (2013) Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Meth 10: 57-59.
    • (2013) Nat Meth , vol.10 , pp. 57-59
    • Bokulich, N.A.1    Subramanian, S.2    Faith, J.J.3    Gevers, D.4    Gordon, J.I.5
  • 53
    • 78650453707 scopus 로고    scopus 로고
    • Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
    • Claesson MJ, Wang Q, O'Sullivan O, Greene-Diniz R, Cole JR, et al. (2010) Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res 38: e200.
    • (2010) Nucleic Acids Res , vol.38
    • Claesson, M.J.1    Wang, Q.2    O'Sullivan, O.3    Greene-Diniz, R.4    Cole, J.R.5
  • 54
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • DOI 10.1128/AEM.00062-07
    • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267. (Pubitemid 47326658)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 55
    • 84355166737 scopus 로고    scopus 로고
    • Impact of training sets on classification of high-throughput bacterial 16S rRNA gene surveys
    • Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, et al. (2012) Impact of training sets on classification of high-throughput bacterial 16S rRNA gene surveys. The ISME journal 6: 94-103.
    • (2012) The ISME Journal , vol.6 , pp. 94-103
    • Werner, J.J.1    Koren, O.2    Hugenholtz, P.3    DeSantis, T.Z.4    Walters, W.A.5
  • 56
    • 84871808499 scopus 로고    scopus 로고
    • Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
    • doi:10.1093/nar/gks808
    • Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, et al. (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41: e1 doi:10.1093/nar/gks808.
    • (2013) Nucleic Acids Res , vol.41
    • Klindworth, A.1    Pruesse, E.2    Schweer, T.3    Peplies, J.4    Quast, C.5
  • 57
    • 50049126125 scopus 로고    scopus 로고
    • Resistance, resilience, and redundancy in microbial communities
    • Allison SD, Martiny JBH (2008) Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci U S A 105: 11512-11519.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 11512-11519
    • Allison, S.D.1    Martiny, J.B.H.2
  • 59
    • 79953277056 scopus 로고    scopus 로고
    • Seasonal differences in bacterial community composition following nutrient additions in a eutrophic lake
    • Newton RJ, McMahon KD (2011) Seasonal differences in bacterial community composition following nutrient additions in a eutrophic lake. Environ Microbiol 13: 887-899.
    • (2011) Environ Microbiol , vol.13 , pp. 887-899
    • Newton, R.J.1    McMahon, K.D.2
  • 61
    • 80053650957 scopus 로고    scopus 로고
    • Resistance, resilience and recovery: Aquatic bacterial dynamics after water column disturbance
    • Shade A, Read JS, Welkie DG, Kratz TK, Wu CH, et al. (2011) Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance. Environ Microbiol 13: 2752-2767.
    • (2011) Environ Microbiol , vol.13 , pp. 2752-2767
    • Shade, A.1    Read, J.S.2    Welkie, D.G.3    Kratz, T.K.4    Wu, C.H.5
  • 62
    • 84871329250 scopus 로고    scopus 로고
    • Lake microbial communities are resilient after a whole-ecosystem disturbance
    • Shade A, Read JS, Youngblut ND, Fierer N, Knight R, et al. (2012) Lake microbial communities are resilient after a whole-ecosystem disturbance. ISME J 6: 2153-2167.
    • (2012) ISME J , vol.6 , pp. 2153-2167
    • Shade, A.1    Read, J.S.2    Youngblut, N.D.3    Fierer, N.4    Knight, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.