Bacteriophytochrome controls carotenoid-independent response to photodynamic stress in a non-photosynthetic rhizobacterium, Azospirillum brasilense Sp7

Scientific Reports

Volumn 2, Issue , 2012, Pages

  Kumar, Santosh ^a   Kateriya, Suneel ^b   Singh, Vijay Shankar ^a   Tanwar, Meenakshi ^b   Agarwal, Shweta ^a   Singh, Hina ^a   Khurana, Jitendra Paul ^c   Amla, Devinder Vijay ^d   Tripathi, Anil Kumar ^a  

^a BANARAS HINDU UNIVERSITY   (India)

^b Department of Biochemistry ^*  (India)

^c UNIVERSITY OF DELHI   (India)

^d CSIR NATIONAL BOTANICAL RESEARCH INSTITUTE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CAROTENOID; PHYTOCHROME; RECOMBINANT PROTEIN; TOLONIUM CHLORIDE;

ARTICLE; AZOSPIRILLUM BRASILENSE; BIOSYNTHESIS; CHEMISTRY; CLASSIFICATION; DIMERIZATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIGHT; METABOLISM; MUTATION; PHYLOGENY;

AZOSPIRILLUM BRASILENSE; BACTERIAL PROTEINS; CAROTENOIDS; DIMERIZATION; LIGHT; MUTATION; PHYLOGENY; PHYTOCHROME; RECOMBINANT PROTEINS; TOLONIUM CHLORIDE;

EID: 84870802630     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep00872     Document Type: Article

References (50)

1. Elías-Arnanz, M., Padmanabhan, S. & Murillo, F. J. Light-dependent gene regulation in nonphototrophic bacteria. Curr. Opin. Microbiol. 14, 128-135 (2011).
2. Ziegelhoffer, E. C. & Donohue, T. J. Bacterial responses to photo-oxidative stress. Nat Rev Microbiol. 7, 856-863 (2009).
3. Sayed, Z., Harris, F. & Phoenix, D. A. A study on the bacterial photo-toxicity of phenothiazinium based photosensitisers. FEMS Immunol. Med. Microbiol. 43, 367-372 (2005). (Pubitemid 40228948)
4. Hellingwerf, K. J. The molecular basis of sensing and responding to light in microorganisms. Antonie Van Leeuwenhoek 81, 51-59 (2002). (Pubitemid 35314596)
5. Glaeser, J. & Klug, G. Photo-oxidative stress in Rhodobacter sphaeroides: protective role of carotenoids and expression of selected genes. Microbiol. 151, 1927-1938 (2005). (Pubitemid 40909035)
6. Rockwell, C. N., Su, Y. S. & Lagarias, J. C. Phytochrome structure and signaling mechanisms. Annu. Rev. Plant. Biol. 57, 837-858 (2006). (Pubitemid 44061047)
7. Rockwell, N. C. & Lagarias, J. C. A brief history of phytochromes. Chemphyschem. 11, 1172-1180 (2010).
8. Fankhauser, C. The phytochromes, a family of red/far-red absorbing photoreceptors. J. Biol. Chem. 276, 11453-11456 (2001).
9. Bellini, D. & Papiz, M. Z. Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor. Structure 20, 1436-1446 (2012).
10. Vierstra, R. D. & Karniol, B. Phytochromes in microorganisms. In: handbook of photosensory receptors. (W. R. Briggs and J. L. Spudich, eds). Wiley-VCH Press, Wehiheim Germany 171-195 (2005).
11. Yang X, Stojkovic E. A, Kuk, J. & Moffat, K. Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proc. Natl. Acad. Sci. USA 104, 12571-12576 (2007). (Pubitemid 47206179)
12. Yang, X., Kuk, J. & Moffat, K. Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction. Proc. Natl. Acad. Sci. USA 105, 14715-14720 (2008).
13. Cho, M. H., Yoo, Y., Bhoo, S. H. & Lee, S. W. Purification and characterization of a recombinant bacteriophytochrome of Xanthomonas oryzae pathovar oryzae. Protein J. 30, 124-131 (2011).
14. Barkovits, K., Schubert, B., Heine, S., Scheer, M. & Frankenberg-Dinkel, N. Function of the bacteriophytochrome BphP in the RpoS/Las quorum-sensing network of Pseudomonas aeruginosa. Microbiol. 157, 1651-1664 (2011).
15. Essen, L. O., Mailliet, J. & Hughes, J. The structure of a complete phytochrome sensory module in the Pr ground state. Proc. Natl. Acad. Sci. USA 105, 14709-14714 (2008).
16. Ulijasz, A. T. et al. Cyanochromes are blue/green light photoreversible photoreceptors defined by a stable double cysteine linkage to a phycoviolobilintype chromophore. J. Biol. Chem. 284, 29757-29772 (2009).
17. van der Horst, M. A., Key, J. & Hellingwerf, K. J. Photosensing in chemotrophic, non-phototrophic bacteria: let there be light sensing too. Trends Microbiol 15, 554-562 (2007). (Pubitemid 350137737)
18. Giraud, E. et al. Anew type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris. J. Biol. Chem. 280, 32389-32397 (2005). (Pubitemid 41361849)
19. Wilde, A., Fiedler, B. & Borner, T. The cyanobacterial phytochrome Cph2 inhibits phototaxis towards blue light. Mol. Microbiol. 44, 981-988 (2002). (Pubitemid 34535534)
20. Rottwinkel, G., Oberpichler, I. & Lamparter, T. Bathy phytochromes in rhizobial soil bacteria. J. Bacteriol. 192, 5124-5133 (2010).
21. Oberpichler, I., Rosen, R., Rasouly, A., Vugman, M., Ron, E. Z. & Lamparter, T. Light affects motility and infectivity of Agrobacterium tumefaciens. Env. Microbiol. 10, 2020-2029 (2008).
22. Davis, S. J., Vener, A. V. & Vierstra, R. D. Bacteriophytochromes: phytochromelike photoreceptors from non photosynthetic eubacteria. Science 286, 2517-2520 (1999).
23. Karniol, B. & Vierstra, R. D. The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties. Proc. Natl. Acad. Sci. USA 100, 2807-2812 (2003). (Pubitemid 36297580)
24. Scheerer, P. et al. Light induced conformational changes of the chromophore and the protein in phytochromes: bacterial phytochromes as model systems. Chemphyschem. 11, 1090-1105 (2010).
25. Tien, T. M., Gaskins, M. H. & Hubbell, D. H. Plant growth substances produced by Azospirillum brasilense and their effect on the growth of Pearl millet (Pennisetum americanum L.) Appl. Env. Microbiol. 37, 1016-1024 (1979).
26. Li, H., Zhang, J., Vierstra, R. D. & Li, H. Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy. Proc. Natl. Acad. Sci. USA 107, 10872-10877 (2010).
27. Wagner, J. R., Zhang, J., Brunzelle, J. S., Vierstra, R. D. & Forest, K. T. High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution. J. Biol. Chem. 282, 12298-12309 (2007). (Pubitemid 47100678)
28. Noack, S., Michael, N., Rosen, R. & Lamparter, T. Protein conformational changes of Agrobacterium phytochrome Agp1 during chromophore assembly and photoconversion. Biochem. 46, 4164-4176 (2007). (Pubitemid 46536078)
29. König, K., Teschke, M., Sigusch, B., Glockmann, E., Eick, S. & Pfister, W. Red light kills bacteria via photodynamic action. Cell Mol. Biol. 46, 1297-1303 (2000).
30. Tarutina, M., Ryjenkov, D. A. & Gomelsky, M. An unorthodox bacteriophytochrome from Rhodobacter sphaeroides involved in turnover of the second messenger c-di-GMP. J. Biol. Chem. 281, 34751-34758 (2006). (Pubitemid 46036515)
31. Lysenko, V. S. et al. Separation and mass spectrometry identification of carotenoid complex from radioresistant bacteria Deinococcus radiodurans. J. Anal. Chem. 66, 1281-1284 (2011).
32. Briviba, K., Klotz, L. O. & Sies, H. Toxic and signaling effects of photochemically or chemically generated singlet oxygen in biological systems. Biol. Chem. 378, 1259-1265 (1997). (Pubitemid 27507541)
33. Wilson, M. Lethal photosensitisation of oral bacteria and its potential application in the photodynamic therapy of oral infections. Photochem. Photobiol. Sci. 3, 412-418 (2004). (Pubitemid 38855147)
34. Wang, X., Wang, H. & Huang, Z. Photosensitization induced by exposure to colour cathode ray tube monitor following topical 5-aminolaevulinic acid-based photodynamic therapy: a case report. Acta. Derm. Venereol. 90, 546-548 (2005).
35. Maisch, T., Baier, J., Franz, B., Maier, M., Landthaler, M., Szeimies, R. M. & Bäumler, W. The role of singlet oxygen and oxygen concentration in photodynamic inactivation of bacteria. Proc. Natl. Acad. Sci. USA 104, 7223-7228 (2007). (Pubitemid 47186036)
36. Mohammadi, M., Burbank, L. & Roper, M. C. Biological role of pigment production for the bacterial phytopathogen Pantoea stewartii subsp. Stewartii. Appl. Environ. Microbiol. 78, 6859-6865 (2012).
37. St Denis, T. G., Huang, L., Dai, T. & Hamblin, M. R. Analysis of the bacterial heat shock response to photodynamic therapy-mediated oxidative stress. Photochem. Photobiol. 87, 707-713 (2011).
38. Guisbert, E., Herman, C., Lu, C. Z. & Gross, C. A. A chaperone network controls the heat shock response in E. coli. Genes Dev. 18, 2812-2821 (2004). (Pubitemid 39507773)
39. Gamer, J., Multhaup, G., Tomoyasu, T., McCarty, J. S., Rüdiger, S., Schönfeld, H. J., Schirra, C., Bujard, H. & Bukau, B. A cycle of binding and release of the DnaK, DnaJ and GrpE chaperones regulates activity of the Escherichia coli heat shock transcription factor sigma32. EMBO J. 15, 607-17 (1996).
40. Bukau, B. & Horwich, A. L. The Hsp70 and Hsp60 chaperone machines. Cell 92, 351-366 (1998). (Pubitemid 28093013)
41. Hartl, F. U. Molecular chaperones in cellular protein folding. Nature 381, 571-579 (1996).
42. Mary, I., Tu, C. J., Grossman, A. & Vaulot, D. Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313. Microbiol. 150, 1271-1281 (2004). (Pubitemid 38744730)
43. Nuss, A. M., Glaeser, J. & Klug, G. RpoHII activates oxidative stress defense systems and is controlled by RpoE in the singlet oxygen dependent response in Rhodobacter sphaeroides. J. Bacteriol. 191, 220-230 (2009).
44. Nuss, A. M., Glaeser, J., Berghoff, B. A. & Klug, G. Overlapping alternative sigma factor regulons in the response to singlet oxygen in Rhodobacter sphaeroides. J. Bacteriol. 192, 2613-2623 (2010).
45. Dobereiner, J. & Day, J. M. Associative symbiosis in tropical grasses: characterization of microorganism and dinitrogen fixing sites. Int. Symp. on Nitrogen Fixation-Interdisciplinary Discussion, In NewtonW. E. and Nyman C. J. (ed. ), Pullman, WA: Washington State University Press, 518-538 (1976).
46. Vanstockem, M., Michiels, K., Vanderleyden, J. & van Gool, A. Transfer and random integration of Tn5 in Azospirillum. Azospirillum III: genetics, physiology, ecology. In Klingmuller W. (ed. ), Berlin Springer-Verlag 74-84 (1985).
47. Mishra, M. N., Kumar, S., Gupta, N., Kaur, S., Gupta, A. & Tripathi, A. K. An extracytoplasmic function sigma factor cotranscribed with its cognate anti-sigma factor confers tolerance to NaCl, ethanol and methylene blue in Azospirillum brasilense Sp7. Microbiol. 157, 988-999 (2011).
48. Gambetta, G. A. & Lagarias, J. C. Genetic engineering of phytochrome biosynthesis in bacteria. Proc. Natl. Acad. Sci. USA 98, 10566-10571 (2001). (Pubitemid 32878661)
49. Thirunavukkarasu, N., Mishra, M. N., Spaepen, S., Vanderleyden, J., Gross, C. A. & Tripathi, A. K. An extra-cytoplasmic function sigma factor and anti-sigma factor control carotenoid biosynthesis in Azospirillum brasilense. Microbiol 154, 2096-2105 (2008).
50. Zwietering, M. H., Jongenburger, I., Rombouts, F. M. & van't Riet, K. Modeling of the bacterial growth curve. Appl. Environ. Microbiol. 56, 1875-1881 (1990). (Pubitemid 20202159)