Why we need more non-seed plant models

New Phytologist

Volumn 216, Issue 2, 2017, Pages 355-360

  Rensing, Stefan A ^a,b  

^a PHILIPPS UNIVERSITY MARBURG   (Germany)

^b UNIVERSITY OF FREIBURG   (Germany)

Author keywords

Charophyta; evolution; fern; hornwort; liverwort; moss; Streptophyta

Indexed keywords

ANCESTRY; ANGIOSPERM; BIOLOGICAL DEVELOPMENT; BRYOPHYTE; ECOLOGICAL MODELING; EVOLUTION; FERN; GENOME; GREEN ALGA; LIVERWORT; MODEL; MOSS; PLANT; SAMPLING; TAXONOMY;

BRYOPHYTA; CHARALES; EMBRYOPHYTA; FILICOPHYTA; MAGNOLIOPHYTA; SPERMATOPHYTA; STREPTOPHYTA;

BIODIVERSITY; BIOLOGICAL MODEL; EVOLUTION; GENETICS; PHYSIOLOGY; PLANT; PLANT SEED;

BIODIVERSITY; BIOLOGICAL EVOLUTION; MODELS, BIOLOGICAL; PLANTS; SEEDS;

EID: 85012964564     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.14464     Document Type: Article

References (40)

1. Avramidou EV, Doulis AG, Aravanopoulos FA. 2015. Determination of epigenetic inheritance, genetic inheritance, and estimation of genome DNA methylation in a full-sib family of Cupressus sempervirens L. Gene 562: 180–187.
2. Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, Depamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA et al. 2011. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 5: 5.
3. Beike AK, Horst NA, Rensing SA. 2010. Axenic bryophyte in vitro cultivation. Endocytobiosis and Cell Research 20: 102–108.
4. Burian A, Barbier de Reuille P, Kuhlemeier C. 2016. Patterns of stem cell divisions contribute to plant longevity. Current Biology 26: 1385–1394.
5. Buschmann H, Zachgo S. 2016. The evolution of cell division: from streptophyte algae to land plants. Trends in Plant Science 21: 872–883.
6. Christenhusz MJM, Reveal JL, Farjon A, Gardner MF, Mill RR, Chase MW. 2011. A new classification and linear sequence of extant gymnosperms. Phylotaxa 19: 55–70.
7. Delaux P-M, Xie X, Timme RE, Puech-Pages V, Dunand C, Lecompte E, Delwiche CF, Yoneyama K, Bécard G, Séjalon-Delmas N. 2012. Origin of strigolactones in the green lineage. New Phytologist 195: 857–871.
8. Delwiche CF, Cooper ED. 2015. The evolutionary origin of a terrestrial flora. Current Biology 25: R899–R910.
9. Diaz S, Kattge J, Cornelissen JH, Wright IJ, Lavorel S, Dray S, Reu B, Kleyer M, Wirth C, Prentice IC et al. 2016. The global spectrum of plant form and function. Nature 529: 167–171.
10. Goldstein B, King N. 2016. The future of cell biology: emerging model organisms. Trends in Cell Biology 26: 818–824.
11. Groth-Malonek M, Wahrmund U, Polsakiewicz M, Knoop V. 2007. Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae. Molecular Biology and Evolution 24: 1068–1074.
12. Hanke ST, Rensing SA. 2010. In vitro association of non-seed plant gametophytes with arbuscular mycorrhiza fungi. Endocytobiosis and Cell Research 20: 95–101.
13. Harholt J, Moestrup O, Ulvskov P. 2016. Why plants were terrestrial from the beginning. Trends in Plant Science 21: 96–101.
14. Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N et al. 2014. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nature Communications 5: 3978.
15. Horst NA, Katz A, Pereman I, Decker EL, Ohad N, Reski R. 2016. A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction. Nature Plants 2: 15 209.
16. Hudry B, Thomas-Chollier M, Volovik Y, Duffraisse M, Dard A, Frank D, Technau U, Merabet S. 2014. Molecular insights into the origin of the Hox-TALE patterning system. eLife 3: e01939.
17. Kato S, Sakayama H, Sano S, Kasai F, Watanabe MM, Tanaka J, Nozaki H. 2008. Morphological variation and intraspecific phylogeny of the ubiquitous species Chara braunii (Charales, Charophyceae) in Japan. Phycologia 47: 191–202.
18. Kirst M, Johnson AF, Baucom C, Ulrich E, Hubbard K, Staggs R, Paule C, Retzel E, Whetten R, Sederoff R. 2003. Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana. Proceedings of the National Academy of Sciences, USA 100: 7383–7388.
19. Lanna E. 2015. Evo-devo of non-bilaterian animals. Genetics and Molecular Biology 38: 284–300.
20. Lee JH, Lin H, Joo S, Goodenough U. 2008. Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family. Cell 133: 829–840.
21. McAdam SA, Brodribb TJ, Banks JA, Hedrich R, Atallah NM, Cai C, Geringer MA, Lind C, Nichols DS, Stachowski K et al. 2016. Abscisic acid controlled sex before transpiration in vascular plants. Proceedings of the National Academy of Sciences, USA 113: 12 862–12 867.
22. Muthukumar B, Joyce BL, Elless MP, Stewart CN Jr. 2013. Stable transformation of ferns using spores as targets: Pteris vittata and Ceratopteris thalictroides. Plant Physiology 163: 648–658.
23. Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A et al. 2013. The Norway spruce genome sequence and conifer genome evolution. Nature 497: 579–584.
24. Oikawa A, Matsuda F, Kikuyama M, Mimura T, Saito K. 2011. Metabolomics of a single vacuole reveals metabolic dynamism in an alga Chara australis. Plant Physiology 157: 544–551.
25. Plackett AR, Di Stilio VS, Langdale JA. 2015. Ferns: the missing link in shoot evolution and development. Frontiers in Plant Science 6: 972.
26. Proust H, Honkanen S, Jones VA, Morieri G, Prescott H, Kelly S, Ishizaki K, Kohchi T, Dolan L. 2015. RSL class I genes controlled the development of epidermal structures in the common ancestor of land plants. Current Biology 28: 93–99.
27. Rensing SA. 2016. (Why) does evolution favour embryogenesis? Trends in Plant Science 21: 562–573.
28. Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud P-F, Lindquist EA, Kamisugi Y et al. 2008. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319: 64–69.
29. Rovekamp M, Bowman JL, Grossniklaus U. 2016. Marchantia MpRKD regulates the gametophyte-sporophyte transition by keeping egg cells quiescent in the absence of fertilization. Current Biology 26: 1782–1789.
30. Sakakibara K, Ando S, Yip HK, Tamada Y, Hiwatashi Y, Murata T, Deguchi H, Hasebe M, Bowman JL. 2013. KNOX2 genes regulate the haploid-to-diploid morphological transition in land plants. Science 339: 1067–1070.
31. Sakakibara K, Reisewitz P, Aoyama T, Friedrich T, Ando S, Sato Y, Tamada Y, Nishiyama T, Hiwatashi Y, Kurata T et al. 2014. WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens. Development 141: 1660–1670.
32. Sayou C, Monniaux M, Nanao MH, Moyroud E, Brockington SF, Thevenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y et al. 2014. A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science 343: 645–648.
33. Sessa EB, Banks JA, Barker MS, Der JP, Duffy AM, Graham SW, Hasebe M, Langdale J, Li FW, Marchant DB et al. 2014. Between two fern genomes. Gigascience 3: 15.
34. Sorensen I, Fei Z, Andreas A, Willats WG, Domozych DS, Rose JK. 2014. Stable transformation and reverse genetic analysis of Penium margaritaceum: a platform for studies of charophyte green algae, the immediate ancestors of land plants. Plant Journal 77: 339–351.
35. Szovenyi P, Frangedakis E, Ricca M, Quandt D, Wicke S, Langdale JA. 2015. Establishment of Anthoceros agrestis as a model species for studying the biology of hornworts. BMC Plant Biology 15: 98.
36. Vasco A, Smalls TL, Graham SW, Cooper ED, Wong GK, Stevenson DW, Moran RC, Ambrose BA. 2016. Challenging the paradigms of leaf evolution: Class III HD-Zips in ferns and lycophytes. New Phytologist 212: 745–758.
37. de Vries J, Stanton A, Archibald JM, Gould SB. 2016. Streptophyte terrestrialization in light of plastid evolution. Trends in Plant Science 21: 467–476.
38. Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA et al. 2014. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences, USA 111: E4859–E4868.
39. Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ, Banks JA, Soltis DE et al. 2015. An exploration into fern genome space. Genome Biology and Evolution 7: 2533–2544.
40. Xu B, Ohtani M, Yamaguchi M, Toyooka K, Wakazaki M, Sato M, Kubo M, Nakano Y, Sano R, Hiwatashi Y et al. 2014. Contribution of NAC transcription factors to plant adaptation to land. Science 343: 1505–1508.