A new classification and linear sequence of extant gymnosperms

Phytotaxa

Volumn 19, Issue , 2011, Pages 55-70

  Christenhusz, Maarten J M ^a   Reveal, James L ^b   Farjon, Aljos ^c   Gardner, Martin F ^d   Mill, Robert R ^d   Chase, Mark W ^e  

^a UNIVERSITY OF HELSINKI   (Finland)

^b Department of Obstetrics Gynecology   (United States)

^c ROYAL BOTANIC GARDENS   (United Kingdom)

^d ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^e JODRELL LABORATORY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 80051858921     PISSN: 11793155     EISSN: 11793163     Source Type: Journal    
DOI: 10.11646/phytotaxa.19.1.3     Document Type: Article

References (38)

1. Adams, R.P., Bartel, J.A. & Price, R.A. (2009) A new genus, Hesperocyparis, for the cypresses of the western hemisphere. Phytologia 91: 160-185.
2. Bailey, I.W. (1944) The development of vessels in angiosperms and its significance in morphological research. American Journal of Botany 31: 421-428.
3. Bierhorst, D.W. (1971) Morphology of vascular plants. Macmillan, New York.
4. Bobrov, A.V.F.Ch. & Melikian, A.P. (2006) A new class of coniferophytes and its system based on the structure of the female reproductive organs. Komarovia 4: 47-115.
5. Braukmann, T., Kuzmina, M. & Stefanović, S. (2010) Structural changes in the plastid genome of gymnosperms support the "gnepine" hypothesis. Abstract, Botany 2010, available on-line: http://2010.botanyconference.org/engine/search/index.php?func=detail&aid=287.
6. Burleigh, J.G. & Mathews, S. (2004) Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life. American Journal of Botany 91: 1599-1613.
7. Chase, M.W. & 41 co-authors (1993) Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Annals of the Missouri Botanical Garden 80: 528-580.
8. Chase, M.W. & Reveal, J.L. (2009) A phylogenetic classification of the land plants to accompany APG III. Botanical Journal of the Linnean Society 161: 122-127.
9. Chaw, S.-M., Parkinson, C.L., Cheng, Y., Vincent, T.M. & Palmer, J.D. (2000) Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. Proceedings of the National Academy of Sciences, USA 97: 4086-4091.
10. Chaw, S.-M., Zharkikh, A., Sung, H.-M., Lau, T.-C. & Li, W.-H. (1997) Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences. Molecular Biology and Evolution 14: 56-68.
11. Conran, J.G., Woods, G.M., Martin, P.G., Dowd, J.M., Quinn, C.J., Gadek, P.A. & Price, R.A. (2000) Generic relationships within and between the gymnosperm families Podocarpaceae and Phyllocladaceae based on an analysis of the chloroplast gene rbcL. Australian Journal of Botany 48: 715-724.
12. Doweld, A.B. & Reveal, J.L. (1999, as '1998') Validation of new suprageneric names in Pinophyta. Phytologia 84: 363-367.
13. Eames, A.J. (1952) Relationships of Ephedrales. Phytomorphology 2: 79-100.
14. Farjon, A. (2010) A Handbook of the World's Conifers. E.J. Brill, Leiden/Boston.
15. Gadek, P.A., Alpers, D.L., Heslewood, M.M. & Quinn, C.J. (2000) Relationships within Cupressaceae sensu lato: a combined morphological and molecular approach. American Journal of Botany 87: 1044-1057.
16. Hao, D.C., Xiao, P.G., Huang, B.L., Ge, G.B. & Yang, L. (2008) Interspecific relationships and origins of Taxaceae and Cephalotaxaceae revealed by partitioned Bayesian analyses of chloroplast and nuclear DNA sequences. Plant Systematics and Evolution 276: 89-104.
17. Hasebe, M., Kofuji, R., Ito, M., Kato, M., Iwatsuki, K. & Veda, K. (1992) Phylogeny of gymnosperms inferred from rbcLgene sequences. Botanical Magazine (Tokyo) 105: 673-679.
18. Haston, E., Richardson, J.E., Stevens, P.F., Chase, M.W. & Harris, D.J. (2007) A linear sequence of Angiosperm Phylogeny Group II families. Taxon 56: 7-12.
19. Haston, E., Richardson, J.E., Stevens, P.F., Chase, M.W. & Harris, D.J. (2009) The linear Angiosperm Phylogeny Group (LAPG) III: a linear sequence of the families in APG III. Botanical Journal of the Linnean Society 161: 128-131.
20. Hori, H., Lim, B.-L. & Osawa, S. (1985) Evolution of green plants as deduced from 5S. rRNA sequences. Proceedings of the National Academy of Sciences, USA 82: 820-823.
21. Kelch, D.G. (1997) The phylogeny of the Podocarpaceae based on morphological evidence. Systematic Botany 22: 113-131.
22. Kelch, D.G. (1998) Phylogeny of Podocarpaceae: comparison of evidence from morphology and 18S rDNA. American Journal of Botany 85: 986-996.
23. Kunzmann, L. (2007) Araucariaceae (Pinopsida): aspects in palaeobiogeography and palaeobiodiversity in the Mesozoic. Zoologischer Anzeiger 246: 257-277.
24. Lindstrom, A.J. (2009) Typification of some species names in Zamia L. (Zamiaceae), with an assessment of the status of Chigua D. Stev. Taxon 58: 265-270.
25. Liston, A., Gernandt, D.S., Vining T.F., Campbell, C.S. & Piñero, D. (2003) Molecular phylogeny of Pinaceae and Pinus, in: Mill, R.R. (ed.), Proceedings of the Fourth International Conifer Conference [Acta Horticulturae No. 615]. International Society for Horticultural Science, Leuven, pp. 107-114.
26. Little, D.P., Schwarzbach, A.E., Adams, R.P. & Hsieh, C.-F. (2004) The circumscription and phylogenetic relationships of Callitropsis and the newly described genus Xanthocyparis (Cupressaceae). American Journal of Botany 91: 1872-1881.
27. Mao, K., Hao, G., Liu, J., Adams, R.P. & Milne, R.I. (2010) Diversification and biogeography of Juniperus(Cupressaceae): variable diversification rates and multiple intercontinental dispersals. New Phytologist 188: 254-272.
28. Melikian, A.P. & Bobrov, A.V. (2000) Morfologiya shchenskikh reproduktivi'kh obganov i op't rostroenniya filogeneticheskoj sistemy poryadkov Podocarpales, Cephalotaxales i Taxales. [Morphology of female reproductive structures and an attempt of the construction of phylogenetic system of orders Podocarpales, Cephalotaxales and Taxales]. Botanicheskij Zhurnal (Moscow & Leningrad) 85(7): 50-68.
29. Passalia, M.G., Del Fueyo, G. & Archangelsky, S. (2010) An Early Cretaceous zamiaceous cycad of South West Gondwana: Restrepophyllum nov. gen. from Patagonia, Argentina. Review of Palaeobotany and Palynology 161: 137-150.
30. Price, R.A. (2003) Generic and familial relationships of the Taxaceae from rbcL and matK sequence comparisons, in: Mill, R.R. (ed.). Proceedings of the fourth international conifer conference [Acta Horticultural No. 615]. International Society for Horticultural Science, Leuven, pp. 235-237.
31. Qiu, Y.-L., Lee, J., Bernasconi-Quadroni, F., Soltis, D.E., Soltis, P.S., Zanis, M., Zimmer, E.A., Chen, Z., Savolainen, V. & Chase, M.W. (1999) The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes. Nature 402: 404-407.
32. Ran, J.-H., Gao, H. & Wang, X.-Q. (2010) Fast evolution of the retroprocessed mitochondrial rps3 gene in conifer II and further evidence for the phylogeny of gymnosperms. Molecular Phylogenetics and Evolution 54: 136-149.
33. Rydin, C., Källersjö, M. & Friis, E.M. (2002) Seed plant relationships and the systematic position of Gnetales based on nuclear and chloroplast DNA: conflicting data, rooting problems, and the monophyly of conifers. International Journal of Plant Sciences 163: 197-214.
34. Sinclair, W.T., Mill, R.R., Gardner, M.F., Woltz, P., Jaffré, T., Preston, J., Hollingsworth, M.L., Ponge, A. & Möller, M. (2002) Evolutionary relationships of the New Caledonian heterotrophic conifer Parasitaxus usta (Podocarpaceae), inferred from chloroplast trnL-F intron/spacer and nuclear rDNA ITS2 sequences. Plant Systematics and Evolution 233: 79-104.
35. Sporne, K.R. (1965) The morphology of gymnosperms, ed. 1. Hutchinson, London.
36. Sun, C., Dilcher, D.L., Wang, H., Sun, G. & Ge, Y. (2008) A study of Ginkgo leaves from the Middle Jurassic of Inner Mongolia, China. International Journal of Plant Sciences 169: 1128-1139.
37. Troitsky, A.V., Melekhovets, Y.F., Rakhimova, G.M., Bobrova, V.K., Valiejo-Roman, K.M. & Antonov, A.S. (1991) Angiosperm origin and early stages of seed plant evolution deduced from rRNA sequence comparisons. Journal of Molecular Evolution 32: 253-261.
38. Zgurski, J.M., Rai, H.S., Fai, Q.M., Bogler, D.J., Francisco-Ortega, J. & Graham, S.W. (2008) How well do we understand the overall backbone of cycad phylogeny? New insights from a large, multigene plastid data set. Molecular Phylogenetics and Evolution 47: 1232-1237.