Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 12, 2003, Pages 7383-7388

  Kirst, Matias ^a   Johnson, Arthur F ^a   Baucom, Christie ^a   Ulrich, Erin ^a   Hubbard, Kristy ^a   Staggs, Rod ^b   Paule, Charles ^b   Retzel, Ernest ^b   Whetten, Ross ^a   Sederoff, Ronald ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; CONTIG;

ARABIDOPSIS; ARTICLE; CLONE; DNA SEQUENCE; DNA SYNTHESIS; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE SEQUENCE; GENETIC CONSERVATION; GENOTYPE; NONHUMAN; OPEN READING FRAME; PINE; PLANT SEED; PRIORITY JOURNAL; RETROPOSON; SEQUENCE HOMOLOGY; WOOD;

3' UNTRANSLATED REGIONS; 5' UNTRANSLATED REGIONS; ARABIDOPSIS; CONSERVED SEQUENCE; CONTIG MAPPING; DNA, COMPLEMENTARY; DNA, PLANT; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION; GENES, PLANT; GENOME, PLANT; MOLECULAR SEQUENCE DATA; PINUS; PINUS TAEDA; RETROELEMENTS; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; WOOD;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUDICOTYLEDONS; MAGNOLIOPHYTA; PINUS TAEDA; SPERMATOPHYTA;

EID: 0038471197     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1132171100     Document Type: Article

References (41)

1. Edwards, D., Davies, K. L. & Axe, L. (1992) Nature 357, 683-685.
2. Bowe, L. M., Coat, G. & de Pamphilis, C. W. (2000) Proc. Natl. Acad. Sci. USA 97, 4092-4097.
3. Kuzoff, R. K. & Gasser, C. S. (2002) Trends Plant Sci. 5, 330-336.
4. Chaw, S.-M., Parkinson, C. L., Cheng, Y., Vincent, T. M. & Palmer, J. D. (2000) Proc. Natl. Acad. Sci. USA 97, 4086-4091.
5. Leitch, I. J., Hanson, L., Winfield, M., Parker, J. & Bennett, M. D. (2001) Ann. Bot. (London) 88, 843-849.
6. Wakamiya, I., Newton, R. J., Johnston, J. S. & Price, H. J. (1993) Am. J. Bot. 80, 1235-1241.
7. The Arabidopsis Genome Initiative (2000) Nature 408, 791-826.
8. Goff, S. A., Ricke, D., Lan, T. H., Presting, G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P., Varma, H., et al. (2002) Science 296, 92-100.
9. Yu, J., Hu, S., Wang, J., Wong, G. K., Li, S., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., et al. (2002) Science 296, 79-92.
10. Sax, K. & Sax, H. J. (1933) J. Arnold Arbor. 14, 356-389.
11. Allen, K. (2002) Proc. Natl. Acad. Sci. USA 99, 9568-9572.
12. Ewing, B., Hillier, L., Wendl, M. C. & Green, P. (1998) Genome Res. 8, 175-185.
13. Ewing, B. & Green, P. (1998) Genome Res. 8, 186-194.
14. Allona, I., Quinn, M., Shoop, E., Swope, K., St. Cyr, S., Carlis, J., Riedl, J., Retzel, E., Campbell, M. M., Sederoff, R. & Whetten, R. W. (1998) Proc. Natl. Acad. Sci. USA 95, 9693-9698.
15. Whetten, R., Sun, Y.-H., Zhang, Y. & Sederoff, R. (2001) Plant Mol. Biol. 47, 275-291.
16. Chang, S., Puryear, J. & Cairney, J. (1993) Plant Mol. Biol. Rep. 11, 113-116.
17. Ewing, B. & Green, P. (2000) Nat. Genet. 25, 232-234.
18. Altschul, S., Madden, T., Schaffer, A., Zhang, J. H., Zhang, Z., Miller, W. & Lipman, D. (1997) Nucleic Acids Res. 25, 3389-3402.
19. Crow, J. F. & Retzel, E. F. (2001) DIOGENES (Univ. of Minnesota, Minneapolis), Version 2.1.2.
20. Liang, F., Holt, I., Pertea, G., Karamycheva, S., Salzberg, S. & Quackenbush, J. (2000) Nat. Genet. 25, 239-240.
21. Makalowski, W. & Boguski, M. S. (1998) Proc. Natl. Acad. Sci. USA 95, 9407-9412.
22. Kossack, D. S. & Kinlaw, C. S. (1999) Plant Mol. Biol. 39, 417-426.
23. Bork, P. (2000) Genome Res. 10, 398-400.
24. Brandon, C. & Tooze, J. (1999) Introduction to Protein Structure (Garland, New York), 2nd Ed., p. 410.
25. Jackson, R. J. (1993) Cell 74, 9-14.
26. Kan, Z., Gish, W., Rouchka, E., Glasscock, J. & States, D. (2000) Proc. Int. Conf. Intell. Syst. Mol. Biol. 8, 218-227.
27. Zhang, Y., Sederoff, R. R. & Allona, I. (2000) Tree Physiol. 20, 457-466.
28. Schultz, C. J., Johnson, K. L., Currie, G. & Bacic, A. (2000) Plant Cell 12, 1751-1756.
29. Zhang, Y., Brown, G., Whetten, R., Loopstra, C. A., Neale, D., Kileiszewski, M. J. & Sederoff, R. R. (2003) Plant Mol. Biol., in press.
30. Wolfe, K. H., Gouy, M. L., Yang, Y. W., Sharp, P. M. & Li, W. H. (1989) Proc. Natl. Acad. Sci. USA 86, 6201-6205.
31. Bennetzen, J. (2002) Science 296, 60-63.
32. Duret, L., Dorkeld, F. & Gautier, C. (1993) Nucleic Acids Res. 21, 2315-2322.
33. Jareborg, N., Birney, E. & Durbin, R. (1999) Genome Res. 9, 815-824.
34. Mann, C. C. & Plummer, M. L. (2002) Science 295, 1626-1629.
35. Sporne, K. R. (1980) New Phytol. 85, 419-445.
36. Lev-Yadun, S. (1994) J. Exp. Bot. 45, 1845-1849.
37. Lev-Yadun, S. (1997) Ann. Bot. (London) 80, 125-129.
38. Zhao, C. S., Johnson, B. J., Kositsup, B. & Beers, E. P. (2000) Plant Physiol. 123, 1185-1196.
39. Lev-Yadun, S. & Flaishman, M. A. (2001) IAWA J. 22, 159-169.
40. Bohle, U.-R., Hilger, H. & Martin, W. F. (1996) Proc. Natl. Acad. Sci. USA 93, 11740-11745.
41. Givnish, T. J. & Sytsma, K. J. (2000) Molecular Evolution and Adaptive Radiation (Cambridge Univ. Press, Cambridge, U.K.), p. 621.