-
1
-
-
58549098576
-
The earliest land plants
-
Gensel PG. The earliest land plants. Ann Rev Ecol Evol. 2008;39:459-77.
-
(2008)
Ann Rev Ecol Evol
, vol.39
, pp. 459-477
-
-
Gensel, P.G.1
-
2
-
-
0030885968
-
The origin and early evolution of plants on land
-
Kenrick P, Crane PR. The origin and early evolution of plants on land. Nature. 1997;389:33-9.
-
(1997)
Nature
, vol.389
, pp. 33-39
-
-
Kenrick, P.1
Crane, P.R.2
-
3
-
-
33750303564
-
The deepest divergences in land plants inferred from phylogenomic evidence
-
Qiu YL, Li L, Wang B, Chen Z, Knoop V, Groth-Malonek M, et al. The deepest divergences in land plants inferred from phylogenomic evidence. Proc Natl Acad Sci. 2006;103:15511-6.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 15511-15516
-
-
Qiu, Y.L.1
Li, L.2
Wang, B.3
Chen, Z.4
Knoop, V.5
Groth-Malonek, M.6
-
4
-
-
84863338313
-
Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set
-
Chang Y, Graham SW. Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set. Am J Bot. 2011;98:839-49.
-
(2011)
Am J Bot
, vol.98
, pp. 839-849
-
-
Chang, Y.1
Graham, S.W.2
-
5
-
-
0033638953
-
Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants
-
Nickrent DL, Parkinson CL, Palmer JD, Duff RJ. Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Mol Biol Evol. 2000;17:1885-95.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1885-1895
-
-
Nickrent, D.L.1
Parkinson, C.L.2
Palmer, J.D.3
Duff, R.J.4
-
6
-
-
4944236760
-
Chloroplast phylogeny indicates that bryophytes are monophyletic
-
Nishiyama T, Wolf PG, Kugita M, Sinclair RB, Sugita M, Sugiura C, et al. Chloroplast phylogeny indicates that bryophytes are monophyletic. Mol Biol Evol. 2004;21:1813-9.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1813-1819
-
-
Nishiyama, T.1
Wolf, P.G.2
Kugita, M.3
Sinclair, R.B.4
Sugita, M.5
Sugiura, C.6
-
7
-
-
0032514486
-
The gain of three mitochondrial introns identifies liverworts as the earliest land plants
-
Qiu YL, Cho Y, Cox JC, Palmer JD. The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature. 1998;394:671-4.
-
(1998)
Nature
, vol.394
, pp. 671-674
-
-
Qiu, Y.L.1
Cho, Y.2
Cox, J.C.3
Palmer, J.D.4
-
8
-
-
84894600564
-
Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions
-
Cox CJ, Li B, Foster PG, Embley TM, Civan P. Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions. Syst Biol. 2014;63:272-9.
-
(2014)
Syst Biol
, vol.63
, pp. 272-279
-
-
Cox, C.J.1
Li, B.2
Foster, P.G.3
Embley, T.M.4
Civan, P.5
-
9
-
-
84909619344
-
Phylotranscriptomic analysis of the origin and early diversification of land plants
-
Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proc Natl Acad Sci. 2014;111:E4859-68.
-
(2014)
Proc Natl Acad Sci
, vol.111
, pp. E4859-E4868
-
-
Wickett, N.J.1
Mirarab, S.2
Nguyen, N.3
Warnow, T.4
Carpenter, E.5
Matasci, N.6
-
10
-
-
34250174230
-
An ancient mechanism controls the development of cells with a rooting function in land plants
-
Menand B, Yi K, Jouannic S, Hoffmann L, Ryan E, Linstead P, et al. An ancient mechanism controls the development of cells with a rooting function in land plants. Science. 2007;316:1477-80.
-
(2007)
Science
, vol.316
, pp. 1477-1480
-
-
Menand, B.1
Yi, K.2
Jouannic, S.3
Hoffmann, L.4
Ryan, E.5
Linstead, P.6
-
11
-
-
34447266182
-
Step-by-step acquisition of the gibberellin-DELLA growth-regulatory mechanism during land-plant evolution
-
Yasumura Y, Crumpton-Taylor M, Fuentes S, Harberd NP. Step-by-step acquisition of the gibberellin-DELLA growth-regulatory mechanism during land-plant evolution. Curr Biol. 2007;17:1225-30.
-
(2007)
Curr Biol
, vol.17
, pp. 1225-1230
-
-
Yasumura, Y.1
Crumpton-Taylor, M.2
Fuentes, S.3
Harberd, N.P.4
-
12
-
-
33644796518
-
A conserved transcription factor mediates nuclear control of organelle biogenesis in anciently diverged land plants
-
Yasumura Y, Moylan E, Langdale J. A conserved transcription factor mediates nuclear control of organelle biogenesis in anciently diverged land plants. Plant Cell. 2005;17:1894-907.
-
(2005)
Plant Cell
, vol.17
, pp. 1894-1907
-
-
Yasumura, Y.1
Moylan, E.2
Langdale, J.3
-
13
-
-
84859178717
-
Major transitions in the evolution of early land plants: a bryological perspective
-
Ligrone R, Duckett JG, Renzaglia KS. Major transitions in the evolution of early land plants: a bryological perspective. Ann Bot. 2012;109:851-71.
-
(2012)
Ann Bot
, vol.109
, pp. 851-871
-
-
Ligrone, R.1
Duckett, J.G.2
Renzaglia, K.S.3
-
15
-
-
84904795614
-
Plant evolution at the interface of paleontology and developmental biology: An organism-centered paradigm
-
Rothwell GW, Wyatt SE, Tomescu AM. Plant evolution at the interface of paleontology and developmental biology: An organism-centered paradigm. Am J Bot. 2014;101:899-913.
-
(2014)
Am J Bot
, vol.101
, pp. 899-913
-
-
Rothwell, G.W.1
Wyatt, S.E.2
Tomescu, A.M.3
-
16
-
-
84927045893
-
Insights into Morphology, Anatomy and Systematics of Hornworts
-
Cambridge: Cambridge University Press
-
Renzaglia KS, Villarreal JC, Duff RJ. New Insights into Morphology, Anatomy and Systematics of Hornworts. In: Bryophyte Biology II. Cambridge: Cambridge University Press; 2009. p. 139-71.
-
(2009)
In: Bryophyte Biology II
, pp. 139-171
-
-
Renzaglia, K.S.1
Villarreal, J.C.2
Duff, R.J.3
-
17
-
-
0002603686
-
A comparative morphology and developmental anatomy of the anthocerotophyta
-
Renzaglia KS. A comparative morphology and developmental anatomy of the anthocerotophyta. J Hattori Bot Lab. 1978;44:31-90.
-
(1978)
J Hattori Bot Lab
, vol.44
, pp. 31-90
-
-
Renzaglia, K.S.1
-
18
-
-
84866657287
-
The origin of the sporophyte shoot in land plants: a bryological perspective
-
Ligrone R, Duckett JG, Renzaglia KS. The origin of the sporophyte shoot in land plants: a bryological perspective. Ann Bot. 2012;110:935-41.
-
(2012)
Ann Bot
, vol.110
, pp. 935-941
-
-
Ligrone, R.1
Duckett, J.G.2
Renzaglia, K.S.3
-
19
-
-
84869234158
-
Hornwort pyrenoids, carbon-concentrating structures, evolved and were lost at least five times during the last 100 million years
-
Villarreal JC, Renner SS. Hornwort pyrenoids, carbon-concentrating structures, evolved and were lost at least five times during the last 100 million years. Proc Natl Acad Sci. 2012;109:18873-8.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 18873-18878
-
-
Villarreal, J.C.1
Renner, S.S.2
-
20
-
-
0002147532
-
Ultrstructure and development of plastids in bryophytes
-
Duckett JG, Renzaglia KS. Ultrstructure and development of plastids in bryophytes. Adv Bryology. 1988;3:33-93.
-
(1988)
Adv Bryology
, vol.3
, pp. 33-93
-
-
Duckett, J.G.1
Renzaglia, K.S.2
-
22
-
-
79952765535
-
A synthesis of hornwort diversity: patterns, causes and future work
-
Villarreal JC, Cargill DC, Hagborg A, Soderstrom L, Renzaglia KS. A synthesis of hornwort diversity: patterns, causes and future work. Phytotaxa. 2010;9:150-66.
-
(2010)
Phytotaxa
, vol.9
, pp. 150-166
-
-
Villarreal, J.C.1
Cargill, D.C.2
Hagborg, A.3
Soderstrom, L.4
Renzaglia, K.S.5
-
23
-
-
84887442839
-
Genome size increases in recently diverged hornwort clades
-
Bainard JD, Villarreal JC. Genome size increases in recently diverged hornwort clades. Genome. 2013;56:431-5.
-
(2013)
Genome
, vol.56
, pp. 431-435
-
-
Bainard, J.D.1
Villarreal, J.C.2
-
25
-
-
29444461474
-
Production of rosmarinic acid and a new rosmarinic acid 3'-O-ß-D-glucoside in suspension cultures of the hornwort Anthoceros agrestis Paton
-
Vogelsang K, Schneider B, Petersen M. Production of rosmarinic acid and a new rosmarinic acid 3'-O-ß-D-glucoside in suspension cultures of the hornwort Anthoceros agrestis Paton. Planta. 2006;223:369-73.
-
(2006)
Planta
, vol.223
, pp. 369-373
-
-
Vogelsang, K.1
Schneider, B.2
Petersen, M.3
-
26
-
-
14844298242
-
Studies on Anthocerotales
-
Proskauer JM. Studies on Anthocerotales. VIII Phytomorphology. 1969;19:52-66.
-
(1969)
VIII Phytomorphology
, vol.19
, pp. 52-66
-
-
Proskauer, J.M.1
-
27
-
-
0001693751
-
Induction of budding on chloronemata and caulonemata of the moss, Physcomitrella patens, using isopentenyladenine
-
Reski R, Abel WO. Induction of budding on chloronemata and caulonemata of the moss, Physcomitrella patens, using isopentenyladenine. Planta. 1985;165:354-8.
-
(1985)
Planta
, vol.165
, pp. 354-358
-
-
Reski, R.1
Abel, W.O.2
-
28
-
-
65749098375
-
Culturing the moss Physcomitrella patens
-
pdb prot5136.
-
Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS. Culturing the moss Physcomitrella patens. Cold Spring Harb Protoc 2009, 2009:pdb prot5136.
-
(2009)
Cold Spring Harb Protoc 2009
-
-
Cove, D.J.1
Perroud, P.F.2
Charron, A.J.3
McDaniel, S.F.4
Khandelwal, A.5
Quatrano, R.S.6
-
29
-
-
17144409344
-
Studies on Anthocerotales VII
-
Proskauer JM. Studies on Anthocerotales VII. Phytomorphology. 1967;17:61-70.
-
(1967)
Phytomorphology
, vol.17
, pp. 61-70
-
-
Proskauer, J.M.1
-
30
-
-
0031526548
-
Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
-
Porebski S, Bailey LG, Baum B. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep. 1997;15:8-15.
-
(1997)
Plant Mol Biol Rep
, vol.15
, pp. 8-15
-
-
Porebski, S.1
Bailey, L.G.2
Baum, B.3
-
31
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, et al. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature. 2011;477:419-23.
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
Stegle, O.2
Behr, J.3
Steffen, J.G.4
Drewe, P.5
Hildebrand, K.L.6
-
32
-
-
84900791120
-
Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood (Populus trichocarpa)
-
Zhou L, Bawa R, Holliday JA. Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood (Populus trichocarpa). Mol Ecol. 2014;23:2486-99.
-
(2014)
Mol Ecol
, vol.23
, pp. 2486-2499
-
-
Zhou, L.1
Bawa, R.2
Holliday, J.A.3
-
33
-
-
57449087865
-
A sequence-anchored genetic linkage map for the moss, Physcomitrella patens
-
Kamisugi Y, von Stackelberg M, Lang D, Care M, Reski R, Rensing SA, et al. A sequence-anchored genetic linkage map for the moss, Physcomitrella patens. Plant J. 2008;56:855-66.
-
(2008)
Plant J
, vol.56
, pp. 855-866
-
-
Kamisugi, Y.1
Stackelberg, M.2
Lang, D.3
Care, M.4
Reski, R.5
Rensing, S.A.6
-
34
-
-
0000088919
-
Some approaches to the study of the role of metals in the metabolism of microrganisms
-
Hutner SH, Provasoli L, Schatz A, Haskins CP. Some approaches to the study of the role of metals in the metabolism of microrganisms. Proc Am Phil Soc. 1950;94:152-70.
-
(1950)
Proc Am Phil Soc
, vol.94
, pp. 152-170
-
-
Hutner, S.H.1
Provasoli, L.2
Schatz, A.3
Haskins, C.P.4
-
35
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114-20.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
36
-
-
84928994303
-
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
-
Coil D, Jospin G, Darling AE. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics 2014, doi:10.1093/bioinformatics/btu661.
-
(2014)
Bioinformatics
-
-
Coil, D.1
Jospin, G.2
Darling, A.E.3
-
37
-
-
84891349005
-
Informed and automated k-mer size selection for genome assembly
-
Chikhi R, Medvedev P. Informed and automated k-mer size selection for genome assembly. Bioinformatics. 2014;30:31-7.
-
(2014)
Bioinformatics
, vol.30
, pp. 31-37
-
-
Chikhi, R.1
Medvedev, P.2
-
38
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20:1297-303.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
-
39
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9:357-9.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.2
-
40
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo M, Banks E, Poplin R, Garimella K, Maguire J, Hartl C, et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011;43:491-8.
-
(2011)
Nat Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.1
Banks, E.2
Poplin, R.3
Garimella, K.4
Maguire, J.5
Hartl, C.6
-
41
-
-
80455129691
-
SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data
-
Wei Z, Wang W, Hu P, Lyon GJ, Hakonarson H. SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data. Nucl Acids Res. 2011;39:e32.
-
(2011)
Nucl Acids Res
, vol.39
, pp. e32
-
-
Wei, Z.1
Wang, W.2
Hu, P.3
Lyon, G.J.4
Hakonarson, H.5
-
42
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek P, Auton A, Abecasis G, Albers CA, Banks A, DePristo MA, et al. The variant call format and VCFtools. Bioinformatics. 2011;27:2156-8.
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.A.4
Banks, A.5
DePristo, M.A.6
|