The evolutionary origin of a terrestrial flora

Current Biology

Volumn 25, Issue 19, 2015, Pages R899-R910

  Delwiche, Charles Francis ^a   Cooper, Endymion Dante ^b  

^a University of Maryland   (United States)

^b QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANATOMY AND HISTOLOGY; CHAROPHYTA; CLASSIFICATION; EMBRYOPHYTA; EVOLUTION; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY;

BIOLOGICAL EVOLUTION; CHAROPHYCEAE; EMBRYOPHYTA; EVOLUTION, MOLECULAR; PHYLOGENY;

EID: 84943412492     PISSN: 09609822     EISSN: 18790445     Source Type: Journal    
DOI: 10.1016/j.cub.2015.08.029     Document Type: Review

References (112)

1. S.M. Adl, A.G.B. Simpson, M.A. Farmer, R.A. Andersen, O.R. Anderson, J.R. Barta, S.S. Browser, G. Brugerolle, R.A. Fensome, S. Fredericq, and et al. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists J. Eukaryot. Microbiol. 52 2005 399 451
2. T.N. Taylor, E.L. Taylor, and M. Krings Paleobotany: The Biology and Evolution of Fossil Plants 2nd Edition 2009 Academic Press Burlington, MA 1252
3. B. Marin, M. Klingberg, and M. Melkonian Phylogenetic relationships among the cryptophyta: Analyses of nuclear-encoded SSU rRNA sequences support the monophyly of extant plastid-containing lineages Protist 149 1998 265 276
4. C. Delwiche, M. Kuhsel, and J. Palmer Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids Mol. Phylogenet. Evol. 4 1995 110 128
5. P.J. Keeling The endosymbiotic origin, diversification and fate of plastids Phil. Trans. R. Soc. B: Biol. Sci. 365 2010 729 748
6. N.J. Butterfield Bangiomorpha pubescens n. gen., n. sp.: implications for the evolution of sex, multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes Paleobiology 26 2000 386 404
7. E.J. Javaux, A.H. Knoll, and M.R. Walter Morphological and ecological complexity in early eukaryotic ecosystems Nature 412 2001 66 69
8. C.E. Blank, and P. Sanchez-Baracaldo Timing of morphological and ecological innovations in the cyanobacteria - a key to understanding the rise in atmospheric oxygen Geobiology 8 2010 1 23
9. H.S. Yoon, Y.D. Hackett, C. Ciniglia, G. Pinto, and D. Bhattacharya A molecular timeline for the origin of photosynthetic eukaryotes Mol. Biol. Evol. 21 2004 809 818
10. M.D. Brasier Green algae (Chlorophyta) and the question of freshwater symbiogenesis in the early proterozoic J. Phycol. 49 2013 1036 1039
11. P.-M. Delaux, A.K. Nanda, C. Mathé, N. Sejalon-Delmas, and C. Dunand Molecular and biochemical aspects of plant terrestrialization Persp. Plant Ecol. Evol. Sys. 14 2012 49 59
12. P.G. Gensel, and D. Edwards Plants Invade the Land: Evolutionary and Environmental Perspectives 2001 Columbia University Press
13. P. Kenrick, C.H. Wellman, H. Schneider, and G.D. Edgecombe A timeline for terrestrialization: consequences for the carbon cycle in the Palaeozoic Phil. Trans. R. Soc. B-Biol. Sci. 367 2012 519 536
14. C.H. Wellman, and P.K. Strother The terrestrial biota prior to the origin of land plants (embryophytes): a review of the evidence Palaeontology 58 2015 601 627
15. U. Stockmann, M.A. Adams, J.W. Crawford, D.J. Field, N. Henakaarchchi, M. Jenkins, B. Minasny, A.B. McBratney, V.D. de Courcelles, K. Singh, and et al. The knowns, known unknowns and unknowns of sequestration of soil organic carbon Agric. Eco. Environ. 164 2013 80 99
16. T.W. Dahl, E.U. Hammarlund, A.D. Anbar, D.P.G. Bond, B.C. Gill, G.W. Gordon, A.H. Knoll, A.T. Nielsen, N.H. Schovsbo, and D.E. Canfield Devonian rise in atmospheric oxygen correlated to the radiations of terrestrial plants and large predatory fish Proc. Natl. Acad. Sci. USA 107 2010 17911 17915
17. B. Poulter, D. Frank, P. Ciais, R.B. Myneni, N. Andela, J. Bi, G. Broquet, J.G. Canadell, F. Chevallier, Y.Y. Liu, and et al. Contribution of semi-arid ecosystems to interannual variability of the global carbon cycle Nature 509 2014 600 603
18. M.A. Selosse, C. Strullu-Derrien, F.M. Martin, S. Kamoun, and P. Kenrick Plants, fungi and oomycetes: a 400-million year affair that shapes the biosphere New Phytol. 206 2015 501 506
19. L.R. Kump Hypothesized link between Neoproterozoic greening of the land surface and the establishment of an oxygen-rich atmosphere Proc. Natl. Acad. Sci. USA 111 2014 14062 14065
20. R.E. Blankenship, and H. Hartman The origin and evolution of oxygenic photosynthesis Trends Biochem. Sci. 23 1998 94 97
21. J.M. Olson, and R.E. Blankenship Thinking about the evolution of photosynthesis Photosynth. Res. 80 2004 373 386
22. J.M. Archibald The evolution of algae by secondary and tertiary endosymbiosis G. Piganeau, Genomic Insights into the Biology of Algae Volume 64 2012 87 118
23. C.F. Delwiche Algae in the warp and weave of life: bound by plastids J. Brodie, J. Lewis, Unraveling the Algae: The Past, Present, and Future of Algal Systematics 2007 Taylor and Francis Group LLC Boca Raton, FL 376
24. D. Bhattacharya, and H.A. Schmidt Division Glaucocystophyta Plant Syst. Evol. 11 1997 S139 S148
25. J.A. Raven, J. Beardall, A.W.D. Larkum, and P. Sanchez-Baracaldo Interactions of photosynthesis with genome size and function Phil. Trans. R. Soc. B-Biol. Sci. 368 2013 20120264
26. M.V. Sanchez Puerta, T.R. Bachvaroff, and C.F. Delwiche The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes DNA Res. 12 2005 151 156
27. N. Rolland, G. Curien, G. Finazzi, M. Kuntz, E. Marechal, M. Matringe, S. Ravanel, and D. Seigneurin-Berny The biosynthetic capacities of the plastids and integration between cytoplasmic and chloroplast processes Annu. Rev. Genet. 46 2012 233 264
28. J.D. Palmer, and C.F. Delwiche The origin and evolution of plastids and their genomes D.E. Soltis, P.S. Soltis, J.J. Doyle, Molecular Systematics of Plants II 1998 Kluwer Academic Publishers Boston 375 409
29. P.J. Keeling The number, speed, and impact of plastid endosymbioses in eukaryotic evolution Annu. Rev. Plant Biol. 64 2013 583 607
30. B.A. Curtis, G. Tanifuji, F. Burki, A. Gruber, M. Irimia, S. Maruyama, M.C. Arias, S.G. Ball, G.H. Gile, Y. Hirakawa, and et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs Nature 492 2012 59 65
31. M.W. Gray, and D.F. Spencer Organellar evolution D.M. Roberts, P. Sharp, G. Alderson, M. Collins, Evolution of Microbial Life 1996 Cambridge University Press Cambridge 109 126
32. E.C.M. Nowack, M. Melkonian, and G. Glöckner Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes Curr. Biol. 18 2008 410 418
33. T. Nakayama, and J.M. Archibald Evolving a photosynthetic organelle BMC Biol. 10 2012 35
34. E. Hehenberger, B. Imanian, F. Burki, and P.J. Keeling Evidence for the retention of two evolutionary distinct plastids in dinoflagellates with diatom endosymbionts Genome Biol. Evol. 6 2014 2321 2334
35. J.M. Chesnick, W. Kooistra, U. Wellbrock, and L.K. Medlin Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta) J. Eukaryot. Microbiol. 44 1997 314 320
36. T. Tengs, O.J. Dahlberg, K. Shalchian-Tabrizi, D. Klaveness, K. Rudi, C.F. Delwiche, and K.S. Jakobsen Phylogenetic analyses indicate that the 19' hexanoyloxy- fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin Mol. Biol. Evol. 17 2000 718 729
37. M. Johnson, D. Oldach, C. Delwiche, and D.K. Stoecker Retention of transcriptionally active cryptophyte nuclei by the ciliate Myrionecta rubra Nature 445 2007 426 428
38. K. Takishita, K. Koike, T. Maruyama, and T. Ogata Molecular evidence for plastid robbery (Kleptoplastidy) in Dinophysis, a dinoflagellate causing diarrhetic shellfish poisoning Protist 153 2002 293 302
39. M. Kim, S.W. Nam, W. Shin, D.W. Coats, and M.G. Park The marine dinoflagellate genus Dinophysis is on the way to gaining plastids J. Phycol. 47 2011 S27-S27
40. J.D. Hackett, L. Maranda, H.S. Yoon, and D. Bhattacharya Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae) J. Phycol. 39 2003 440 448
41. P.J. Hansen, L.T. Nielsen, M. Johnson, T. Berge, and K.J. Flynn Acquired phototrophy in Mesodinium and Dinophysis - A review of cellular organization, prey selectivity, nutrient uptake and bioenergetics Harmful Algae. 28 2013 126 139
42. R.C. Fawcett, and M.W. Parrow Mixotrophy and loss of phototrophy among geographic isolates of freshwater Esoptrodinium/Bernardinium Sp (Dinophyceae) J. Phycol. 50 2014 55 70
43. B.A. Read, J. Kegel, M.J. Klute, A. Kuo, S.C. Lefebvre, F. Maumus, C. Mayer, J. Miller, A. Monier, A. Salamov, and et al. Pan genome of the phytoplankton Emiliania underpins its global distribution Nature 499 2013 209 213
44. C.E. Blank Origin and early evolution of photosynthetic eukaryotes in freshwater environments: reinterpreting proterozoic paleobiology and biogeochemical processes in light of trait evolution J. Phycol. 49 2013 1040 1055
45. J.D. Hall, and C.F. Delwiche In the shadow of giants: systematics of the charophyte green algae J. Brodie, J. Lewis, Unraveling the Algae: the Past, Present, and Future of Algal Systematics 2007 CRC Press Boca Raton, Florida 376
46. D. Grzebyk, O. Schofield, C. Vetriani, and P.G. Falkowski The mesozoic radiation of eukaryotic algae: The portable plastid hypothesis J. Phycol. 39 2003 259 267
47. K.R. Mattox, and K.D. Stewart A classification of the green algae: a concept based on comparative cytology D.E.G. Irvine, D.M. John, Systematics of the Green Algae 1984 Academic Press London, UK 29 72
48. T. Nakayama, B. Marin, H.D. Kranz, B. Surek, V.A.R. Huss, I. Inouye, and M. Melkonian The basal position of scaly green flagellates among the green algae (Chlorophyta) is revealed by analyses of nuclear-encoded SSU rRNA sequences Protist 149 1998 367 380
49. M. Melkonian Flagellar apparatus ultrastructure in Mesostigma-Viride (Prasinophyceae) Plant Syst. Evol. 164 1989 93 122
50. M. Melkonian Mesostigma, A key organism in the evolution of 2 major classes of green-algae and related to the ancestry of land plants Brit. Phycol. J. 18 1983 206-206
51. M. Melkonian Flagellar appartus ultrastructure in Mesostigma viride (Prasinophyceae) Plant Syst. Evol. 164 1989 93 122
52. C. Lemieux, C. Otis, and M. Turmel Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution Nature 403 2000 649 652
53. Y. Yoshii, S. Takaichi, T. Maoka, and I. Inouye Photosynthetic pigment composition in the primitive green alga Mesostigma viride (Prasinophyceae): Phylogenetic and evolutionary implications J. Phycol. 39 2003 570 576
54. M. Turmel, J.-F. Pombert, P. Charlebois, C. Otis, and C. Lemieux The green algal ancestry of land plants as revealed by the chloroplast genome Int. J. Plant Sci. 168 2007 679 689
55. F. Kaplan, L.A. Lewis, J. Wastian, and A. Holzinger Plasmolysis effects and osmotic potential of two phylogenetically distinct alpine strains of Klebsormidium (Streptophyta) Protoplasma 249 2012 789 804
56. K. Hori, F. Maruyama, T. Fujisawa, T. Togashi, N. Yamamoto, M. Seo, S. Sato, T. Yamada, H. Mori, N. Tajima, and et al. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation Nat. Commun. 5 2014 3978
57. Comparative Taxonomic Studies on the Genus Klebsormidium (Charophyceae) in Europe G.M. Lockhorst Volume 5 1996 Gustav Fischer Verlag Stuttgart
58. E.D. Cooper Overly simplistic substitution models obscure green plant phylogeny Trends Plant Sci. 19 2014 576 582
59. K.G. Karol, R.M. McCourt, M.T. Cimino, and C.F. Delwiche The closest living relatives of land plants Science 294 2001 2351 2353
60. C. Jeffrey The origin and differentiation of the arche-goniate land plants: A second contribution Kew Bull. 21 1967 335 349
61. K. Bremer, and H.-E. Wanntorp A cladistic classification of green plants Nord. J. Bot. 1 1981 1 3
62. M. Turmel, C. Otis, and C. Lemieux The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants Proc. Natl. Acad. Sci. USA 99 2002 11275 11280
63. M. Turmel, C. Otis, and C. Lemieux The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants Mol. Biol. Evol. 23 2006 1324 1338
64. R.E. Timme, T.R. Bachvaroff, and C.F. Delwiche Broad phylogenomic sampling and the sister lineage of land plants PLoS One 7 2012 e29696
65. C. Finet, R.E. Timme, C.F. Delwiche, and F. Marleta Multigene phylogeny of the green lineage reveals the origin and diversification of land plants Curr. Biol. 20 2010 2217 2222
66. C. Finet, R.E. Timme, C.F. Delwiche, and F. Marlétaz Multigene phylogeny of the green lineage reveals the origin and diversification of land plants Curr. Biol. 22 2012 1456 1457
67. S. Laurin-Lemay, H. Brinkmann, and H. Philippe Origin of land plants revisited in the light of sequence contamination and missing data Curr. Biol. 22 2012 R593 R594
68. S. Wodniok, H. Brinkmann, G. Glöckner, A.J. Heidel, H. Philippe, M. Melkonian, and B. Becker Origin of land plants: do conjugating green algae hold the key? BMC Evol. Biol. 11 2011 104
69. N.J. Wickett, S. Mirarab, N. Nguyen, T. Warnow, E. Carpenter, N. Matasci, S. Ayyampalayam, M.S. Barker, J.G. Burleigh, and M.A. Gitzendanner Phylotranscriptomic analysis of the origin and early diversification of land plants Proc. Natl. Acad. Sci. USA 111 2014 E4859 E4868
70. R.E. Timme, and C.F. Delwiche Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes BMC Plant Biol. 10 2010 96
71. F.O. Bower The Origin of a Land Flora; a Theory Based on the Facts of Alternation 1908 MacMillan and Co., Ltd. London
72. L.E. Graham The origin of the life-cycle of land plants Am. Sci. 73 1985 178 186
73. J.D. Hall, K.G. Karol, R.M. McCourt, and C.F. Delwiche Phylogeny of the conjugating green algae based on chloroplast and mitochondrial nucleotide sequence data J. Phycol. 44 2008 467 477
74. S. Yamada, S. Sonobe, and T. Shimmen Synthesis of a callosic substance during rhizoid differentiation in Spirogyra Plant Cell Physiol. 44 2003 1225 1228
75. L.E. Graham, and C. Taylor Occurrence and phylogenetic significance of special walls at meiosporogenesis in Coleochaete Am. J. Bot. 73 1986 597 601
76. H.J. Marchant Ultrastructure, development and cytoplasmic rotation of seta-bearing cells of Coleochaete-scutata (Chlorophyceae) J. Phycol. 13 1977 28 36
77. I. Foissner, and G.O. Wasteneys The characean internodal cell as a model system for studying wound healing J. Microscopy 247 2012 10 22
78. G.L. Stebbins, and G.J.C. Hill Did multicellular plants invade the land Am. Nat. 115 1980 342 353
79. B. Becker, and B. Marin Streptophyte algae and the origin of embryophytes Ann. Bot. 103 2009 999 1004
80. E.R. Waters Molecular adaptation and the origin of land plants Mol. Phylogenet. Evol. 29 2003 456 463
81. T. Viaene, C.F. Delwiche, S.A. Rensing, and J. Friml Origin and evolution of PIN auxin transporters in the green lineage Trends Plant Sci. 18 2013 5 10
82. P.M. Delaux, X.N. Xie, R.E. Timme, V. Puech-Pages, C. Dunand, E. Lecompte, C.F. Delwiche, K. Yoneyama, G. Becard, and N. Sejalon-Delmas Origin of strigolactones in the green lineage New Phytol. 195 2012 857 871
83. C. Ju, B. Van de Poel, E.D. Cooper, J.H. Thierer, T.R. Gibbons, C.F. Delwiche, and C. Chang Conservation of ethylene as a plant hormone over 450 million years of evolution Nat. Plants 1 2015 e14004
84. D.R. Gallie Appearance and elaboration of the ethylene receptor family during land plant evolution Plant Mol. Biol. 87 2015 521 539
85. Y. Yasumura, R. Pierik, M.D. Fricker, L.A.C.J. Voesenek, and N.P. Harberd Studies of Physcomitrella patens reveal that ethylene-mediated submergence responses arose relatively early in land-plant evolution Plant J. 72 2012 947 959
86. J. Davis, and J. McKetta Solubility of ethylene in water J. Chem. Eng. Data 5 1960 374 375
87. B. Van de Poel, E.D. Cooper, C.F. Delwiche, and C. Chang An evolutionary perspective on the plant hormone ethylene C.-K. Wen, Ethylene in Plants 2014 Springer Amsterdam 109 135
88. L.E. Graham Origin of Land Plants 1993 John Wiley & Sons, Inc. New York, NY
89. P.S. Nobel Physiochemical and Environmental Plant Physiology 4th Edition 2009 Academic Press
90. S.C. Maberly The fitness of the environments of air and water for photosynthesis, growth, reproduction and dispersal of photoautotrophs: An evolutionary and biogeochemical perspective Aquatic Bot. 118 2014 4 13
91. F.U. Battistuzzi, A. Feijao, and S.B. Hedges A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land BMC Evol. Biol. 4 2004 44
92. F.U. Battistuzzi, and S.B. Hedges A major clade of prokaryotes with ancient adaptations to life on land Mol. Biol. Evol. 26 2009 335 343
93. L.V. Berkner, and L.C. Marshall History of major atmospheric components Proc. Natl. Acad. Sci. USA 53 1965 1215 1216
94. C.S. Cockell, and J.A. Raven Ozone and life on the Archaean Earth Philos. Trans. R. Soc. A: Math. Phys. Eng. Sci. 365 2007 1889 1901
95. K.J. Field, S. Pressel, J.G. Duckett, W.R. Rimington, and M.I. Bidartondo Symbiotic options for the conquest of land Trends Ecol. Evol. 30 2015 477 486
96. P. Kenrick, and C. Strullu-Derrien The origin and early evolution of roots Plant Physiol. 166 2014 570 580
97. B. Wang, L.H. Yeun, J.Y. Xue, Y. Liu, J.M. Ané, and Y.L. Qiu Presence of three mycorrhizal genes in the common ancestor of land plants suggests a key role of mycorrhizas in the colonization of land by plants New Phytol. 186 2010 514 525
98. B. Wang, and Y.-L. Qiu Phylogenetic distribution and evolution of mycorrhizas in land plants Mycorrhiza 16 2006 299 363
99. J. Knack, L. Wilcox, P. Delaux, J. Ané, M. Piotrowski, M. Cook, J. Graham, L. Graham, I. Mateu-Andrés, and M.-J. Ciurana 1. Microbiomes of Streptophyte algae and bryophytes suggest that a functional suite of microbiota fostered plant colonization of land microbiomes of Streptophyte algae and bryophytes suggest that a functional suite of microbiota fostered plant colonization of land Int. J. Plant Sci. 176 2015 405 420
100. J. Raven Why are mycorrhizal fungi and symbiotic nitrogen-fixing bacteria not genetically integrated into plants? Ann. Applied Biol. 157 2010 381 391
101. A. Ranjan, B.T. Townsley, Y. Ichihashi, N.R. Sinha, and D.H. Chitwood An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia PLoS Genet. 11 2015 10
102. W. Remy, P.G. Gensel, and H. Hass The gametophyte generation of some early Devonian land plants Int. J. Plant Sci. 154 1993 35 58
103. P. Kenrick, and P.R. Crane Water-conducting cells in early fossil land plants - implications for the early evolution of Tracheophytes Botanical Gazette 152 1991 335 356
104. P. Kenrick, and P.R. Crane The Origin and Early Diversification of Land Plants: a Cladistic Study 1997 Smithsonian Institution Press Washington, DC
105. M.H. Frank, and M.J. Scanlon Transcriptomic evidence for the evolution of shoot meristem function in sporophyte-dominant land plants through concerted selection of ancestral gametophytic and sporophytic genetic programs Mol. Biol. Evol. 32 2015 355 367
106. D. Haig What do we know about Charophyte (Streptophyta) life cycles? J. Phycol. 46 2010 860 867
107. L.K.E. Graham, and L.W. Wilcox The origin of alternation of generations in land plants: a focus on matrotrophy and hexose transport Philos. Trans. R. Soc. Lond. Ser. B-Biol. Sci. 355 2000 757 766
108. R.M. McCourt, C.F. Delwiche, and K.G. Karol Charophyte algae and land plant origins Trends Ecol. Evol. 19 2004 661 666
109. J. Abe, S. Hori, Y. Tsuchikane, N. Kitao, M. Kato, and H. Sekimoto Stable nuclear transformation of the Closterium peracerosum-strigosum-littorale complex Plant Cell Physiol. 52 2011 1676 1685
110. I. Sorensen, Z.J. Fei, A. Andreas, W.G.T. Willats, D.S. Domozych, and J.K.C. Rose Stable transformation and reverse genetic analysis of Penium margaritaceum: a platform for studies of charophyte green algae, the immediate ancestors of land plants Plant J. 77 2014 339 351
111. K. Bremer Summary of green plant phylogeny and classification Cladistics 1 1985 369 385
112. B.N. Prasad, and D.K. Asthana Awadhiella-a new genus of Coleochaetaceae from India Hydrobiologia 62 1979 131 135