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Volumn 108, Issue 7, 2011, Pages 2831-2836

Population genomics and local adaptation in wild isolates of a model microbial eukaryote

Author keywords

Circadian clock; Ecological genomics; Fungi; Genome scan

Indexed keywords

TRANSCRIPTOME;

EID: 79952609214     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1014971108     Document Type: Article
Times cited : (206)

References (55)
  • 1
    • 34447132938 scopus 로고    scopus 로고
    • The genetic basis of adaptive pigmentation variation in Drosophila melanogaster
    • DOI 10.1111/j.1365-294X.2007.03324.x
    • Pool JE, Aquadro CF (2007) The genetic basis of adaptive pigmentation variation in Drosophila melanogaster. Mol Ecol 16:2844-2851. (Pubitemid 47035464)
    • (2007) Molecular Ecology , vol.16 , Issue.14 , pp. 2844-2851
    • Pool, J.E.1    Aquadro, C.F.2
  • 2
    • 70149102931 scopus 로고    scopus 로고
    • Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin
    • Storz JF, et al. (2009) Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin. Proc Natl Acad Sci USA 106:14450-14455.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 14450-14455
    • Storz, J.F.1
  • 4
    • 0030881056 scopus 로고    scopus 로고
    • The genetic basis of an adaptive radiation: Warning colour in two Heliconius species
    • DOI 10.1098/rspb.1997.0161
    • Jiggins CD, McMillan WO (1997) The genetic basis of an adaptive radiation: Warning colour in two Heliconius species. Proc R Soc Lond B Biol Sci 264:1167-1175. (Pubitemid 27401759)
    • (1997) Proceedings of the Royal Society B: Biological Sciences , vol.264 , Issue.1385 , pp. 1167-1175
    • Jiggins, C.D.1    McMillan, W.O.2
  • 5
    • 57249105424 scopus 로고    scopus 로고
    • "Reverse ecology" and the power of population genomics
    • Li YF, Costello JC, Holloway AK, Hahn MW (2008) "Reverse ecology" and the power of population genomics. Evolution 62:2984-2994.
    • (2008) Evolution , vol.62 , pp. 2984-2994
    • Li, Y.F.1    Costello, J.C.2    Holloway, A.K.3    Hahn, M.W.4
  • 6
    • 77649191883 scopus 로고    scopus 로고
    • Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils
    • Turner TL, Bourne EC, Von Wettberg EJ, Hu TT, Nuzhdin SV (2010) Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nat Genet 42:260-263.
    • (2010) Nat Genet , vol.42 , pp. 260-263
    • Turner, T.L.1    Bourne, E.C.2    Von Wettberg, E.J.3    Hu, T.T.4    Nuzhdin, S.V.5
  • 7
    • 24944471763 scopus 로고    scopus 로고
    • Genomic islands of speciation in Anopheles gambiae
    • Turner TL, Hahn MW, Nuzhdin SV (2005) Genomic islands of speciation in Anopheles gambiae. PLoS Biol 3:e285.
    • (2005) PLoS Biol , vol.3
    • Turner, T.L.1    Hahn, M.W.2    Nuzhdin, S.V.3
  • 8
    • 52049084856 scopus 로고    scopus 로고
    • Genomic analysis of adaptive differentiation in Drosophila melanogaster
    • Turner TL, Levine MT, Eckert ML, Begun DJ (2008) Genomic analysis of adaptive differentiation in Drosophila melanogaster. Genetics 179:455-473.
    • (2008) Genetics , vol.179 , pp. 455-473
    • Turner, T.L.1    Levine, M.T.2    Eckert, M.L.3    Begun, D.J.4
  • 9
    • 33744816190 scopus 로고    scopus 로고
    • Genomic islands of differentiation between house mouse subspecies
    • Harr B (2006) Genomic islands of differentiation between house mouse subspecies. Genome Res 16:730-737.
    • (2006) Genome Res , vol.16 , pp. 730-737
    • Harr, B.1
  • 10
    • 77649219524 scopus 로고    scopus 로고
    • Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    • Hohenlohe PA, et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet 6:e1000862.
    • (2010) PLoS Genet , vol.6
    • Hohenlohe, P.A.1
  • 12
    • 0344863884 scopus 로고    scopus 로고
    • A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora
    • Dettman JR, Jacobson DJ, Taylor JW (2003) A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution 57: 2703-2720. (Pubitemid 38078353)
    • (2003) Evolution , vol.57 , Issue.12 , pp. 2703-2720
    • Dettman, J.R.1    Jacobson, D.J.2    Taylor, J.W.3
  • 14
    • 69249184408 scopus 로고    scopus 로고
    • Phylogenetic and biological species diversity within the Neurospora tetrasperma complex
    • Menkis A, Bastiaans E, Jacobson DJ, Johannesson H (2009) Phylogenetic and biological species diversity within the Neurospora tetrasperma complex. J Evol Biol 22:1923-1936.
    • (2009) J Evol Biol , vol.22 , pp. 1923-1936
    • Menkis, A.1    Bastiaans, E.2    Jacobson, D.J.3    Johannesson, H.4
  • 16
    • 0345295170 scopus 로고    scopus 로고
    • Reproductive isolation and phylogenetic divergence in Neurospora: Comparing methods of species recognition in a model eukaryote
    • Dettman JR, Jacobson DJ, Turner E, Pringle A, Taylor JW (2003) Reproductive isolation and phylogenetic divergence in Neurospora: Comparing methods of species recognition in a model eukaryote. Evolution 57:2721-2741. (Pubitemid 38078354)
    • (2003) Evolution , vol.57 , Issue.12 , pp. 2721-2741
    • Dettman, J.R.1    Jacobson, D.J.2    Turner, E.3    Pringle, A.4    Taylor, J.W.5
  • 17
    • 41149179551 scopus 로고    scopus 로고
    • Divergent adaptation promotes reproductive isolation among experimental populations of the filamentous fungus Neurospora
    • Dettman JR, Anderson JB, Kohn LM (2008) Divergent adaptation promotes reproductive isolation among experimental populations of the filamentous fungus Neurospora. BMC Evol Biol 8:35.
    • (2008) BMC Evol Biol , vol.8 , pp. 35
    • Dettman, J.R.1    Anderson, J.B.2    Kohn, L.M.3
  • 18
    • 0345014909 scopus 로고    scopus 로고
    • Variation among natural isolates of Neurospora on small spatial scales
    • Powell AJ, Jacobson DJ, Salter L, Natvig DO (2003) Variation among natural isolates of Neurospora on small spatial scales. Mycologia 95:809-819. (Pubitemid 37489059)
    • (2003) Mycologia , vol.95 , Issue.5 , pp. 809-819
    • Powell, A.J.1    Jacobson, D.J.2    Salter, L.3    Natvig, D.O.4
  • 19
    • 62349132559 scopus 로고    scopus 로고
    • Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
    • Corander J, Marttinen P, Sirén J, Tang J (2008) Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9:539.
    • (2008) BMC Bioinformatics , vol.9 , pp. 539
    • Corander, J.1    Marttinen, P.2    Sirén, J.3    Tang, J.4
  • 20
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755. (Pubitemid 32851390)
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 21
    • 73449149044 scopus 로고    scopus 로고
    • Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
    • Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD (2009) Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet 5:e1000695.
    • (2009) PLoS Genet , vol.5
    • Gutenkunst, R.N.1    Hernandez, R.D.2    Williamson, S.H.3    Bustamante, C.D.4
  • 22
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 23
    • 79952610559 scopus 로고    scopus 로고
    • v2.0. Available at Accessed March 10, 2010
    • Joint Genome Institute (2010) N. tetrasperma mat A v2.0. Available at http://genome.jgi-psf.org/Neute-matA2/Neute-matA2.home.html. Accessed March 10, 2010.
    • (2010) N. tetrasperma Mat A
  • 24
    • 79952590093 scopus 로고    scopus 로고
    • v1.0. Available at Accessed March 10, 2010
    • Joint Genome Institute (2010) N. discreta v1.0. Available at http://genome.jgi-psf.org/Neudi1/Neudi1.home.html. Accessed March 10, 2010.
    • (2010) N. discreta
  • 25
    • 60249095315 scopus 로고    scopus 로고
    • Analysis of site frequency spectra from Arabidopsis with context-dependent corrections for ancestral misinference
    • Morton BR, Dar VU, Wright SI (2009) Analysis of site frequency spectra from Arabidopsis with context-dependent corrections for ancestral misinference. Plant Physiol 149:616-624.
    • (2009) Plant Physiol , vol.149 , pp. 616-624
    • Morton, B.R.1    Dar, V.U.2    Wright, S.I.3
  • 28
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • Liti G, et al. (2009) Population genomics of domestic and wild yeasts. Nature 458: 337-341.
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1
  • 29
    • 79952579777 scopus 로고    scopus 로고
    • Population genomics of intron splicing in 38 Saccharomyces cerevisiae genome sequences
    • Skelly DA, Ronald J, Connelly CF, Akey JM (2009) Population genomics of intron splicing in 38 Saccharomyces cerevisiae genome sequences. Genome Biol Evol 1: 466-478.
    • (2009) Genome Biol Evol , vol.1 , pp. 466-478
    • Skelly, D.A.1    Ronald, J.2    Connelly, C.F.3    Akey, J.M.4
  • 31
    • 20944448714 scopus 로고
    • Genetical structure of populations
    • Wright S (1950) Genetical structure of populations. Nature 166:247-249.
    • (1950) Nature , vol.166 , pp. 247-249
    • Wright, S.1
  • 32
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 34
    • 22744447651 scopus 로고    scopus 로고
    • Adaptation and speciation: What can F(st) tell us?
    • Beaumont MA (2005) Adaptation and speciation: What can F(st) tell us? Trends Ecol Evol 20:435-440.
    • (2005) Trends Ecol Evol , vol.20 , pp. 435-440
    • Beaumont, M.A.1
  • 35
    • 70450233628 scopus 로고    scopus 로고
    • Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
    • Noor MA, Bennett SM(2009) Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species. Heredity 103:439-444.
    • (2009) Heredity , vol.103 , pp. 439-444
    • Noor, M.A.1    Bennett, S.M.2
  • 36
    • 79952583879 scopus 로고    scopus 로고
    • Available at Accessed January 15, 2010
    • Oregon Climate Service (2003) PRISM. Available at http://www. prismclimate.org. Accessed January 15, 2010.
    • (2003) PRISM
  • 38
    • 33847267743 scopus 로고    scopus 로고
    • Mutation and divergence of the phospholipase C gene in Neurospora crassa
    • Gavric O, dos Santos DB, Griffiths A (2007) Mutation and divergence of the phospholipase C gene in Neurospora crassa. Fungal Genet Biol 44:242-249.
    • (2007) Fungal Genet Biol , vol.44 , pp. 242-249
    • Gavric, O.1    Dos Santos, D.B.2    Griffiths, A.3
  • 39
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654. (Pubitemid 21896661)
    • (1991) Nature , vol.351 , Issue.6328 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 40
    • 33644905316 scopus 로고    scopus 로고
    • Cold-induced putative DEAD box RNA helicases CshA and CshB are essential for cold adaptation and interact with cold shock protein B in Bacillus subtilis
    • Hunger K, Beckering CL, Wiegeshoff F, Graumann PL, Marahiel MA (2006) Cold-induced putative DEAD box RNA helicases CshA and CshB are essential for cold adaptation and interact with cold shock protein B in Bacillus subtilis. J Bacteriol 188: 240-248.
    • (2006) J Bacteriol , vol.188 , pp. 240-248
    • Hunger, K.1    Beckering, C.L.2    Wiegeshoff, F.3    Graumann, P.L.4    Marahiel, M.A.5
  • 41
    • 62449182499 scopus 로고    scopus 로고
    • Inference of historical changes in migration rate from the lengths of migrant tracts
    • Pool JE, Nielsen R (2009) Inference of historical changes in migration rate from the lengths of migrant tracts. Genetics 181:711-719.
    • (2009) Genetics , vol.181 , pp. 711-719
    • Pool, J.E.1    Nielsen, R.2
  • 42
    • 0024395599 scopus 로고
    • The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period
    • DOI 10.1038/339558a0
    • McClung CR, Fox BA, Dunlap JC (1989) The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period. Nature 339:558-562. (Pubitemid 19152099)
    • (1989) Nature , vol.339 , Issue.6225 , pp. 558-562
    • Robertson, M.C.C.1    Fox, B.A.2    Dunlap, J.C.3
  • 43
    • 0028258994 scopus 로고
    • Negative feedback defining a circadian clock: Autoregulation of the clock gene frequency
    • Aronson BD, Johnson KA, Loros JJ, Dunlap JC (1994) Negative feedback defining a circadian clock: Autoregulation of the clock gene frequency. Science 263:1578-1584. (Pubitemid 24128359)
    • (1994) Science , vol.263 , Issue.5153 , pp. 1578-1584
    • Aronson, B.D.1    Johnson, K.A.2    Loros, J.J.3    Dunlap, J.C.4
  • 44
    • 0033542410 scopus 로고    scopus 로고
    • Assignment of circadian function for the Neurospora clock gene frequency
    • Merrow M, Brunner M, Roenneberg T (1999) Assignment of circadian function for the Neurospora clock gene frequency. Nature 399:584-586.
    • (1999) Nature , vol.399 , pp. 584-586
    • Merrow, M.1    Brunner, M.2    Roenneberg, T.3
  • 45
    • 0035573078 scopus 로고    scopus 로고
    • Neurospora from natural populations: A global study
    • DOI 10.1006/fgbi.2001.1247
    • Turner BC, Perkins DD, Fairfield A (2001) Neurospora from natural populations: A global study. Fungal Genet Biol 32:67-92. (Pubitemid 34235040)
    • (2001) Fungal Genetics and Biology , vol.32 , Issue.2 , pp. 67-92
    • Turner, B.C.1    Perkins, D.D.2    Fairfield, A.3
  • 47
    • 54149112601 scopus 로고    scopus 로고
    • Functional characterization of DEAD-box RNA helicases in Arabidopsis thaliana under abiotic stress conditions
    • Kim JS, Kim KA, Oh TR, Park CM, Kang H (2008) Functional characterization of DEAD-box RNA helicases in Arabidopsis thaliana under abiotic stress conditions. Plant Cell Physiol 49:1563-1571.
    • (2008) Plant Cell Physiol , vol.49 , pp. 1563-1571
    • Kim, J.S.1    Kim, K.A.2    Oh, T.R.3    Park, C.M.4    Kang, H.5
  • 50
    • 33747369652 scopus 로고    scopus 로고
    • Circadian rhythms in Neurospora crassa and other filamentous fungi
    • Liu Y, Bell-Pedersen D (2006) Circadian rhythms in Neurospora crassa and other filamentous fungi. Eukaryot Cell 5:1184-1193.
    • (2006) Eukaryot Cell , vol.5 , pp. 1184-1193
    • Liu, Y.1    Bell-Pedersen, D.2
  • 51
    • 77956407766 scopus 로고    scopus 로고
    • Integrating evolutionary and functional approaches to infer adaptation at specific loci
    • Storz JF, Wheat CW (2010) Integrating evolutionary and functional approaches to infer adaptation at specific loci. Evolution 64:2489-2509.
    • (2010) Evolution , vol.64 , pp. 2489-2509
    • Storz, J.F.1    Wheat, C.W.2
  • 52
    • 77952337288 scopus 로고    scopus 로고
    • De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis
    • Nowrousian M, et al. (2010) De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genet 6:e1000891.
    • (2010) PLoS Genet , vol.6
    • Nowrousian, M.1
  • 53
    • 59949090259 scopus 로고    scopus 로고
    • De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae
    • Reinhardt JA, et al. (2009) De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. Genome Res 19: 294-305.
    • (2009) Genome Res , vol.19 , pp. 294-305
    • Reinhardt, J.A.1
  • 55
    • 0000220534 scopus 로고
    • The genetics of Neurospora III: Pure bred stocks and crossing over in N. crassa
    • Lindegren CC (1933) The genetics of Neurospora III: Pure bred stocks and crossing over in N. crassa. Bull Torrey Bot Club 60:133-154.
    • (1933) Bull Torrey Bot Club , vol.60 , pp. 133-154
    • Lindegren, C.C.1


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