-
1
-
-
0002435032
-
The regulation and integration of antibiotic production and morphological diferentiation in Streptomyces spp
-
Piggot, P., Moran, C. P., Jr. & Youngman, P. P. 61-94 American Society for Microbiology
-
Champness, W. C. & Chater, K. F. The regulation and integration of antibiotic production and morphological diferentiation in Streptomyces spp. In Regulation of bacterial diferentiation (eds Piggot, P., Moran, C. P., Jr. & Youngman, P. P.) 61-94 (American Society for Microbiology, 1994).
-
(1994)
Regulation of Bacterial Diferentiation
-
-
Champness, W.C.1
Chater, K.F.2
-
2
-
-
84928425829
-
The genus Nonomuraea: A review of a rare actinomycete taxon for novel metabolites
-
Sungthong, R. & Nakaew, N. The genus Nonomuraea: A review of a rare actinomycete taxon for novel metabolites. J. Basic Microbiol. 55, 554-565 (2015).
-
(2015)
J. Basic Microbiol.
, vol.55
, pp. 554-565
-
-
Sungthong, R.1
Nakaew, N.2
-
3
-
-
85009486517
-
Draf genome sequence of Nonomuraea sp. TP-A0861, a producer of myxochelin A
-
Komaki, H., Ichikawa, N., Hosoyama, A., Fujita, N. & Igarashi, Y. Draf genome sequence of Nonomuraea sp. TP-A0861, a producer of myxochelin A. Genome Announc 3, e01430-15 (2015).
-
(2015)
Genome Announc
, vol.3
, pp. e01430-e01515
-
-
Komaki, H.1
Ichikawa, N.2
Hosoyama, A.3
Fujita, N.4
Igarashi, Y.5
-
4
-
-
84960426324
-
Nonomuraea gerenzanensis sp. Nov., an actinomycete producing the glycopeptide antibiotic A40926 (emended classification of Nonomuraea sp
-
ATCC 39727
-
Dalmastri, C. et al. Nonomuraea gerenzanensis sp. nov., an actinomycete producing the glycopeptide antibiotic A40926 (emended classification of Nonomuraea sp. ATCC 39727). Int. J. Syst. Evol. Microbiol 66, 912-921 (2016).
-
(2016)
Int. J. Syst. Evol. Microbiol
, vol.66
, pp. 912-921
-
-
Dalmastri, C.1
-
5
-
-
0023492673
-
A40926, a new glycopeptide antibiotic with anti-Neisseria activity
-
Goldstein, B. P. et al. A40926, a new glycopeptide antibiotic with anti-Neisseria activity. Antimicrob. Agents Chemother. 31, 1961-1966 (1987).
-
(1987)
Antimicrob. Agents Chemother.
, vol.31
, pp. 1961-1966
-
-
Goldstein, B.P.1
-
7
-
-
13144260672
-
Natural merodiploidy involving duplicated rpoB alleles afects secondary metabolism in a producer actinomycete
-
Vigliotta, G. et al. Natural merodiploidy involving duplicated rpoB alleles afects secondary metabolism in a producer actinomycete. Mol. Microbiol. 55, 396-412 (2005).
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 396-412
-
-
Vigliotta, G.1
-
8
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
Vassylyev, D. G., Vassylyeva, M. N., Perederina, A., Tahirov, T. H. & Artsimovitch, I. Structural basis for transcription elongation by bacterial RNA polymerase. Nature 448, 157-162 (2007).
-
(2007)
Nature
, vol.448
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
9
-
-
70549114083
-
Structures of RNA polymerase-antibiotic complexes
-
Ho, M. X., Hudson, B. P., Das, K., Arnold, E. & Ebright, R. H. Structures of RNA polymerase-antibiotic complexes. Curr. Opin. Struct. Biol. 19, 715-723 (2009).
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 715-723
-
-
Ho, M.X.1
Hudson, B.P.2
Das, K.3
Arnold, E.4
Ebright, R.H.5
-
10
-
-
33645767209
-
Contribution of rpoB2 RNA polymerase beta subunit gene to rifampin resistance in Nocardia species
-
Ishikawa, J., Chiba, K., Kurita, H. & Satoh, H. Contribution of rpoB2 RNA polymerase beta subunit gene to rifampin resistance in Nocardia species. Antimicrob. Agents Chemother 50, 1342-1346 (2006).
-
(2006)
Antimicrob. Agents Chemother
, vol.50
, pp. 1342-1346
-
-
Ishikawa, J.1
Chiba, K.2
Kurita, H.3
Satoh, H.4
-
11
-
-
63449126395
-
Activation of dormant bacterial genes by Nonomuraea sp. Strain ATCC 39727 mutant-type RNA polymerase
-
Talà, A. et al. Activation of dormant bacterial genes by Nonomuraea sp. strain ATCC 39727 mutant-type RNA polymerase. J. Bacteriol. 191, 805-814 (2009).
-
(2009)
J. Bacteriol.
, vol.191
, pp. 805-814
-
-
Talà, A.1
-
12
-
-
84872353481
-
New strategies for drug discovery: Activation of silent or weakly expressed microbial gene clusters
-
Ochi, K. & Hosaka, T. New strategies for drug discovery: activation of silent or weakly expressed microbial gene clusters. Appl. Microbiol. Biotechnol. 97, 87-98 (2013).
-
(2013)
Appl. Microbiol. Biotechnol.
, vol.97
, pp. 87-98
-
-
Ochi, K.1
Hosaka, T.2
-
13
-
-
84893449419
-
Activating the expression of bacterial cryptic genes by rpoB mutations in RNA polymerase or by rare earth elements
-
Ochi, K., Tanaka, Y. & Tojo, S. Activating the expression of bacterial cryptic genes by rpoB mutations in RNA polymerase or by rare earth elements. J. Ind. Microbiol. Biotechnol. 41, 403-414 (2014).
-
(2014)
J. Ind. Microbiol. Biotechnol.
, vol.41
, pp. 403-414
-
-
Ochi, K.1
Tanaka, Y.2
Tojo, S.3
-
14
-
-
84940007632
-
Rifampicin-resistance, rpoB polymorphism and RNA polymerase genetic engineering
-
Alifano, P., Palumbo, C., Pasanisi, D. & Talà, A. Rifampicin-resistance, rpoB polymorphism and RNA polymerase genetic engineering. J. Biotechnol. 202, 60-77 (2015).
-
(2015)
J. Biotechnol.
, vol.202
, pp. 60-77
-
-
Alifano, P.1
Palumbo, C.2
Pasanisi, D.3
Talà, A.4
-
15
-
-
79961140870
-
De novo sequencing and assembly of the whole genome of Novosphingobium sp. Strain PP1Y
-
D'Argenio, V. et al. De novo sequencing and assembly of the whole genome of Novosphingobium sp. strain PP1Y. J. Bacteriol. 193, 4296 (2011).
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4296
-
-
D'Argenio, V.1
-
16
-
-
84902305149
-
Complete sequencing of Nov. Osphingobium sp. PP1Y reveals a biotechnologically meaningful metabolic pattern
-
D'Argenio, V. et al. Complete sequencing of Nov. osphingobium sp. PP1Y reveals a biotechnologically meaningful metabolic pattern. BMC Genomics 15, 384 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 384
-
-
D'Argenio, V.1
-
17
-
-
77954394493
-
Characterization of the replication, transfer, and plasmid/lytic phage cycle of the Streptomyces plasmid-phage pZL12
-
Zhong, L., Cheng, Q., Thian, X., Zhao, L. & Qin, Z. Characterization of the replication, transfer, and plasmid/lytic phage cycle of the Streptomyces plasmid-phage pZL12. J. Bacteriol. 192, 3747-3754 (2010).
-
(2010)
J. Bacteriol.
, vol.192
, pp. 3747-3754
-
-
Zhong, L.1
Cheng, Q.2
Thian, X.3
Zhao, L.4
Qin, Z.5
-
18
-
-
27944458298
-
SsgA-like proteins determine the fate of peptidoglycan during sporulation of Streptomyces coelicolor
-
Noens, E. E. et al. SsgA-like proteins determine the fate of peptidoglycan during sporulation of Streptomyces coelicolor. Mol. Microbiol 58, 929-944 (2005).
-
(2005)
Mol. Microbiol
, vol.58
, pp. 929-944
-
-
Noens, E.E.1
-
19
-
-
0038167479
-
The gene cluster for the biosynthesis of the glycopeptide antibiotic A40926 by Nonomuraea species
-
Sosio, M., Stinchi, S., Beltrametti, F., Lazzarini, A. & Donadio, S. The gene cluster for the biosynthesis of the glycopeptide antibiotic A40926 by Nonomuraea species. Chem. Biol. 10, 541-549 (2003).
-
(2003)
Chem. Biol.
, vol.10
, pp. 541-549
-
-
Sosio, M.1
Stinchi, S.2
Beltrametti, F.3
Lazzarini, A.4
Donadio, S.5
-
20
-
-
77950477378
-
Targeted treatment of acute myeloid leukemia in older adults: Role of gentuzumab ozogamycin
-
Duong, H. K. & Sekers, M. A. Targeted treatment of acute myeloid leukemia in older adults: role of gentuzumab ozogamycin. Clin. Interv. Aging 4, 197-205 (2009).
-
(2009)
Clin. Interv. Aging
, vol.4
, pp. 197-205
-
-
Duong, H.K.1
Sekers, M.A.2
-
21
-
-
0242695736
-
Gentuzumab ozogamycin in the treatment of acute myeloid leukemia
-
Giles, F., Estey, E. & O'Brien, S. Gentuzumab ozogamycin in the treatment of acute myeloid leukemia. Cancer 98, 2095-2104 (2003).
-
(2003)
Cancer
, vol.98
, pp. 2095-2104
-
-
Giles, F.1
Estey, E.2
O'Brien, S.3
-
22
-
-
34248532016
-
Enediyne compounds - New promises in anticancer therapy
-
Gredicak, M. & Jeric, I. Enediyne compounds - new promises in anticancer therapy. Acta Pharm 57, 133-150 (2007).
-
(2007)
Acta Pharm
, vol.57
, pp. 133-150
-
-
Gredicak, M.1
Jeric, I.2
-
23
-
-
0026848599
-
Angucycline group antibiotics
-
Rohr, J. & Thiericke, R. Angucycline group antibiotics. Nat. Prod. Rep. 9, 103-137 (1992).
-
(1992)
Nat. Prod. Rep.
, vol.9
, pp. 103-137
-
-
Rohr, J.1
Thiericke, R.2
-
24
-
-
62749159054
-
Phenoxazinone synthase: What's in a name?
-
Le Roes-Hill, M., Goodwin, C. & Burton, S. Phenoxazinone synthase: what's in a name? Trends Biotechnol. 27, 248-258 (2009).
-
(2009)
Trends Biotechnol.
, vol.27
, pp. 248-258
-
-
Le Roes-Hill, M.1
Goodwin, C.2
Burton, S.3
-
25
-
-
34848911303
-
Polyketide synthases and nonribosomal peptide synthetases: The emerging view from bacterial genomics
-
Donadio, S., Monciardini, P. & Sosio, M. Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics. Nat. Prod. Rep. 24, 1073-1109 (2007).
-
(2007)
Nat. Prod. Rep.
, vol.24
, pp. 1073-1109
-
-
Donadio, S.1
Monciardini, P.2
Sosio, M.3
-
26
-
-
79960095192
-
Single-cell genomics: Unravelling the genomes of unculturable microorganisms
-
de Jager, V. & Siezen, R. J. Single-cell genomics: unravelling the genomes of unculturable microorganisms. Microb. Biotechnol 4, 431-437 (2011).
-
(2011)
Microb. Biotechnol
, vol.4
, pp. 431-437
-
-
De Jager, V.1
Siezen, R.J.2
-
27
-
-
56249145109
-
Epsilon-poly-L-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase
-
Yamanaka, K., Maruyama, C., Takagi, H. & Hamano, Y. Epsilon-poly-L-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase. Nat. Chem. Biol. 4, 766-772 (2008).
-
(2008)
Nat. Chem. Biol
, vol.4
, pp. 766-772
-
-
Yamanaka, K.1
Maruyama, C.2
Takagi, H.3
Hamano, Y.4
-
28
-
-
31444432605
-
The biosynthetic gene cluster for the ß-lactam antibiotic tabtoxin in Pseudomonas syringae
-
Kinscherf, T. G. & Willis, D. K. The biosynthetic gene cluster for the ß-lactam antibiotic tabtoxin in Pseudomonas syringae. J. Antibiot. 58, 817-821 (2005).
-
(2005)
J. Antibiot
, vol.58
, pp. 817-821
-
-
Kinscherf, T.G.1
Willis, D.K.2
-
29
-
-
0021888528
-
Glutamine synthetase from Pseudomonas syringae pv. Tabaci: Properties and inhibition by tabtoxinine-beta-lactam
-
Thomas, M. D. & Durbin, R. D. Glutamine synthetase from Pseudomonas syringae pv. tabaci: properties and inhibition by tabtoxinine-beta-lactam. J. Gen. Microbiol. 131, 1061-1067 (1985).
-
(1985)
J. Gen. Microbiol.
, vol.131
, pp. 1061-1067
-
-
Thomas, M.D.1
Durbin, R.D.2
-
30
-
-
0027522569
-
Infuence of pH on bacterial gene-expression
-
Olson, E. R. Infuence of pH on bacterial gene-expression. Mol. Microbiol. 8, 5-14 (1993).
-
(1993)
Mol. Microbiol.
, vol.8
, pp. 5-14
-
-
Olson, E.R.1
-
31
-
-
0342817495
-
Physicochemical factors afecting actinomycete growth and secondary metabolism in
-
ed. Shapiro, S. 263-281 CRC Press
-
Votruba, J. & Vanek, Z. Physicochemical factors afecting actinomycete growth and secondary metabolism in Regulation of secondary metabolism in actinomycetes (ed. Shapiro, S.) 263-281 (CRC Press, 1989).
-
(1989)
Regulation of Secondary Metabolism in Actinomycetes
-
-
Votruba, J.1
Vanek, Z.2
-
32
-
-
0025766432
-
The efects of temperature, pH and growth rate on secondary metabolism in Streptomyces thermoviolaceus grown in a chemostat
-
James, P. D., Edwards, C. & Dawson, M. The efects of temperature, pH and growth rate on secondary metabolism in Streptomyces thermoviolaceus grown in a chemostat. J. Gen. Microbiol. 137, 1715-1720 (1991).
-
(1991)
J. Gen. Microbiol.
, vol.137
, pp. 1715-1720
-
-
James, P.D.1
Edwards, C.2
Dawson, M.3
-
33
-
-
0030985425
-
Environmental signals triggering methylenomycin production by Streptomyces coelicolor A3 (2)
-
Hayes, A., Hobbs, G., Smith, C. P., Oliver, S. G. & Butler, P. R. Environmental signals triggering methylenomycin production by Streptomyces coelicolor A3 (2). J. Bacteriol. 179, 5511-5515 (1997).
-
(1997)
J. Bacteriol
, vol.179
, pp. 5511-5515
-
-
Hayes, A.1
Hobbs, G.2
Smith, C.P.3
Oliver, S.G.4
Butler, P.R.5
-
34
-
-
0342572599
-
Enhancement of kasugamycin production by pH shock in batch cultures of Streptomyces kasugaensis
-
Kim, C. J., Chang, Y. K. & Chun, G. T. Enhancement of kasugamycin production by pH shock in batch cultures of Streptomyces kasugaensis. Biotechnol. Prog. 16, 548-552 (2000).
-
(2000)
Biotechnol. Prog.
, vol.16
, pp. 548-552
-
-
Kim, C.J.1
Chang, Y.K.2
Chun, G.T.3
-
35
-
-
4043057920
-
Efect of pH on the production of the antitumor antibiotic retamycin by Streptomyces olindensis
-
Guimarães, L. M. et al. Efect of pH on the production of the antitumor antibiotic retamycin by Streptomyces olindensis. Biotechnol. Appl. Biochem. 40, 107-111 (2004).
-
(2004)
Biotechnol. Appl. Biochem.
, vol.40
, pp. 107-111
-
-
Guimarães, L.M.1
-
36
-
-
21344466584
-
PH efects on 10 Streptomyces spp. Growth and sporulation depend on nutrients
-
Kontro, M., Lignell, U., Hirvonen, M. R. & Nevalainen, A. pH efects on 10 Streptomyces spp. growth and sporulation depend on nutrients. Lett. Appl. Microbiol. 41, 32-38 (2005).
-
(2005)
Lett. Appl. Microbiol.
, vol.41
, pp. 32-38
-
-
Kontro, M.1
Lignell, U.2
Hirvonen, M.R.3
Nevalainen, A.4
-
37
-
-
33646540388
-
Helicobacter pylori initiates the stringent response upon nutrient and pH downshif
-
Wells, D. H. & Gaynor, E. C. Helicobacter pylori initiates the stringent response upon nutrient and pH downshif. J. Bacteriol. 188, 3726-3729 (2006).
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3726-3729
-
-
Wells, D.H.1
Gaynor, E.C.2
-
38
-
-
55749088669
-
SpoT-triggered stringent response controls usp gene expression in Pseudomonas aeruginosa
-
Boes, N., Schreiber, K. & Schobert, M. SpoT-triggered stringent response controls usp gene expression in Pseudomonas aeruginosa. J. Bacteriol. 190, 7189-7199 (2008).
-
(2008)
J. Bacteriol.
, vol.190
, pp. 7189-7199
-
-
Boes, N.1
Schreiber, K.2
Schobert, M.3
-
39
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
41
-
-
0038243792
-
Production of the glycopeptide antibiotic A40926 by Nonomuraea sp. ATCC 39727: Infuence of medium composition in batch fermentation
-
Gunnarsson, N., Bruheim, P. & Nielsen, J. Production of the glycopeptide antibiotic A40926 by Nonomuraea sp. ATCC 39727: infuence of medium composition in batch fermentation. J. Ind. Microbiol. Biotechnol. 30, 150-156 (2003).
-
(2003)
J. Ind. Microbiol. Biotechnol.
, vol.30
, pp. 150-156
-
-
Gunnarsson, N.1
Bruheim, P.2
Nielsen, J.3
-
42
-
-
8644221215
-
Design of mineral medium for growth of Actinomadura sp. ATCC 39727, producer of the glycopeptide A40926: Efects of calcium ions and nitrogen sources
-
Technikova-Dobrova, Z. et al. Design of mineral medium for growth of Actinomadura sp. ATCC 39727, producer of the glycopeptide A40926: efects of calcium ions and nitrogen sources. Appl. Microbiol. Biotechnol. 65, 671-677 (2004).
-
(2004)
Appl. Microbiol. Biotechnol.
, vol.65
, pp. 671-677
-
-
Technikova-Dobrova, Z.1
-
43
-
-
32444442149
-
Transcriptome profling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH
-
Leaphart, A. B. et al. Transcriptome profling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. J. Bacteriol. 188, 1633-1642 (2006).
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1633-1642
-
-
Leaphart, A.B.1
-
44
-
-
79960079164
-
Bacterial transport of sulfate, molybdate, and related oxyanions
-
Aguilar-Barajas, E., Díaz-Pérez, C., Ramírez-Díaz, M. I., Riveros-Rosas, H. & Cervantes, C. Bacterial transport of sulfate, molybdate, and related oxyanions. Biometals 24, 687-707 (2011).
-
(2011)
Biometals
, vol.24
, pp. 687-707
-
-
Aguilar-Barajas, E.1
Díaz-Pérez, C.2
Ramírez-Díaz, M.I.3
Riveros-Rosas, H.4
Cervantes, C.5
-
45
-
-
84899038774
-
The Escherichia coli CysZ is a pH dependent sulfate transporter that can be inhibited by sulfte
-
Zhang, L., Jiang, W., Nan, J., Almqvist, J. & Huang, Y. The Escherichia coli CysZ is a pH dependent sulfate transporter that can be inhibited by sulfte. Biochim. Biophys. Acta 1838, 1809-1816 (2014).
-
(2014)
Biochim. Biophys. Acta
, vol.1838
, pp. 1809-1816
-
-
Zhang, L.1
Jiang, W.2
Nan, J.3
Almqvist, J.4
Huang, Y.5
-
46
-
-
0001345133
-
Characterization of sulfate transport in cultured tobacco cells
-
Smith, I. K. Characterization of sulfate transport in cultured tobacco cells. Plant Physiol. 58, 358-362 (1976).
-
(1976)
Plant Physiol.
, vol.58
, pp. 358-362
-
-
Smith, I.K.1
-
47
-
-
84857848741
-
Uptake of sulfate but not phosphate by Mycobacterium tuberculosis is slower than that for Mycobacterium smegmatis
-
Song, H. & Niederweis, M. Uptake of sulfate but not phosphate by Mycobacterium tuberculosis is slower than that for Mycobacterium smegmatis. J. Bacteriol. 194, 956-964 (2012).
-
(2012)
J. Bacteriol.
, vol.194
, pp. 956-964
-
-
Song, H.1
Niederweis, M.2
-
48
-
-
0036299643
-
Activation of antibiotic biosynthesis by specifed mutations in the rpoB gene (encoding the RNA polymerase beta subunit) of Streptomyces lividans
-
Hu, H., Zhang, Q. & Ochi, K. Activation of antibiotic biosynthesis by specifed mutations in the rpoB gene (encoding the RNA polymerase beta subunit) of Streptomyces lividans. J. Bacteriol. 184, 3984-3991 (2002).
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3984-3991
-
-
Hu, H.1
Zhang, Q.2
Ochi, K.3
-
49
-
-
0036460093
-
A rifampicin resistance mutation in the rpoB gene confers ppGpp-independent antibiotic production in Streptomyces coelicolor A3 (2)
-
Xu, J., Tozawa, Y., Lai, C., Hayashi, H. & Ochi, K. A rifampicin resistance mutation in the rpoB gene confers ppGpp-independent antibiotic production in Streptomyces coelicolor A3 (2). Mol. Genet. Genomics 268, 179-189 (2002).
-
(2002)
Mol. Genet. Genomics
, vol.268
, pp. 179-189
-
-
Xu, J.1
Tozawa, Y.2
Lai, C.3
Hayashi, H.4
Ochi, K.5
-
50
-
-
33749189622
-
Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthase
-
Brockmann-Gretza, O. & Kalinowski, J. Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthase. BMC Genomics 7, 230 (2006).
-
(2006)
BMC Genomics
, vol.7
, pp. 230
-
-
Brockmann-Gretza, O.1
Kalinowski, J.2
-
51
-
-
38349086492
-
The global role of ppGpp synthesis in morphological diferentiation and antibiotic production in Streptomyces coelicolor A3 (2)
-
Hesketh, A., Chen, W. J., Ryding, J., Chang, S. & Bibb, M. The global role of ppGpp synthesis in morphological diferentiation and antibiotic production in Streptomyces coelicolor A3 (2). Genome Biol. 8, R161 (2007).
-
(2007)
Genome Biol.
, vol.8
, pp. R161
-
-
Hesketh, A.1
Chen, W.J.2
Ryding, J.3
Chang, S.4
Bibb, M.5
-
52
-
-
84903188814
-
Nitrogen stress response and stringent response are coupled in Escherichia coli
-
Brown, D. R., Barton, G., Pan, Z., Buck, M. & Wigneshweraraj, S. Nitrogen stress response and stringent response are coupled in Escherichia coli. Nat. Commun. 5, 4115 (2014).
-
(2014)
Nat. Commun
, vol.5
, pp. 4115
-
-
Brown, D.R.1
Barton, G.2
Pan, Z.3
Buck, M.4
Wigneshweraraj, S.5
-
53
-
-
84937253653
-
Discovery of microbial natural products by activation of silent biosynthetic gene clusters
-
Rutledge, P. J. & Challis, G. L. Discovery of microbial natural products by activation of silent biosynthetic gene clusters. Nat. Rev. Microbiol. 13, 509-523 (2015).
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 509-523
-
-
Rutledge, P.J.1
Challis, G.L.2
-
54
-
-
84958101900
-
Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes
-
Baltz, R. H. Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes. J. Ind. Microbiol. Biotechnol. 43, 343-370 (2016).
-
(2016)
J. Ind. Microbiol. Biotechnol.
, vol.43
, pp. 343-370
-
-
Baltz, R.H.1
-
55
-
-
0031799382
-
Reclassification of termomonospora and microtetraspora
-
Zhang, Z., Wang, Y. & Ruan, J. Reclassification of Termomonospora and Microtetraspora. Int. J. Syst. Bacteriol. 48, 411-422 (1998).
-
(1998)
Int. J. Syst. Bacteriol
, vol.48
, pp. 411-422
-
-
Zhang, Z.1
Wang, Y.2
Ruan, J.3
-
56
-
-
1142275125
-
Reclassification as a Nonomuraea sp. of the strain ATCC 39727, producing the glycopeptide
-
Monciardini, P. & Sosio, M. Reclassification as a Nonomuraea sp. of the strain ATCC 39727, producing the glycopeptide. J. Antibiot. (Tokyo) 57, 68-70 (2004).
-
(2004)
J. Antibiot. (Tokyo)
, vol.57
, pp. 68-70
-
-
Monciardini, P.1
Sosio, M.2
-
57
-
-
0003869903
-
-
The John Innes Foundation
-
Kieser, T., Bibb, M. J., Buttner, M. J., Chater, K. F. & Hopwood D. A. Practical Streptomyces genetics. (The John Innes Foundation, 2000).
-
(2000)
Practical Streptomyces Genetics
-
-
Kieser, T.1
Bibb, M.J.2
Buttner, M.J.3
Chater, K.F.4
Hopwood, D.A.5
-
59
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18 (2012).
-
(2012)
Gigascience
, vol.1
, pp. 18
-
-
Luo, R.1
-
60
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz, R. K. et al. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9, 75 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
-
61
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T. M. & Eddy, S. R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 (1997).
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
62
-
-
34250665888
-
RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
-
Lagesen, K. et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35, 3100-3108 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
-
63
-
-
79959920872
-
AntiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters
-
Medema, M. H. et al. antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. Nucleic Acids Res. 39, W339-W346 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W339-W346
-
-
Medema, M.H.1
-
64
-
-
84883353135
-
AntiSMASH 2.0 - A vers atile plat form for genome mining of secondar y metab olite pro ducers
-
Blin, K. et al. antiSMASH 2.0 - a vers atile plat form for genome mining of secondar y metab olite pro ducers. Nucleic Acid s Res. 41, W204-W212 (2013).
-
(2013)
Nucleic Acid S Res
, vol.41
, pp. W204-W212
-
-
Blin, K.1
-
65
-
-
79959936207
-
NRPSpredictor2 - A web ser ver for predicting NRPS adenylation domain specificity
-
Röttig, M. et al. NRPSpredictor2 - a web ser ver for predicting NRPS adenylation domain specificity. Nucle ic Acid s Res. 39, W362-W367 (2011).
-
(2011)
Nucle Ic Acid S Res
, vol.39
, pp. W362-W367
-
-
Röttig, M.1
-
66
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder, R. & Edwards, R. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27, 863-864 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
67
-
-
84859210032
-
Fast gapped-read alignment with Bowtle 2
-
Langmead, B. & Salzberg, S. Fast gapped-read alignment with Bowtle 2. Nat. Methods 9, 357-359 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.2
-
68
-
-
68549104404
-
The Sequence alignment/map (SAM) format and SAMtools
-
Li, H. et al. The Sequence alignment/map (SAM) format and SAMtools. Bioinfor matics 25, 2078-2079 (2009).
-
(2009)
Bioinfor Matics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
69
-
-
84867318866
-
EasyRNASeq: A Bioconductor package for processing RNA-Seq data
-
Delhomme, N., Padioleau, I., Furlong, E. E. & Steinmetz, L. M. easyRNASeq: a Bioconductor package for processing RNA-Seq data. Bioinformatics 28, 2532-2533 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 2532-2533
-
-
Delhomme, N.1
Padioleau, I.2
Furlong, E.E.3
Steinmetz, L.M.4
-
70
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profles
-
Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
|