-
1
-
-
17044423833
-
Carcinogenic polycyclic aromatic hydrocarbon-DNA adducts and mechanism of action
-
10.1002/em.20095, 15688365
-
Baird WM, Hooven LA, Mahadevan B. Carcinogenic polycyclic aromatic hydrocarbon-DNA adducts and mechanism of action. Environ Mol Mutagen 2005, 45:106-114. 10.1002/em.20095, 15688365.
-
(2005)
Environ Mol Mutagen
, vol.45
, pp. 106-114
-
-
Baird, W.M.1
Hooven, L.A.2
Mahadevan, B.3
-
2
-
-
0031885655
-
Composition and toxicity of petroleum products and their additives
-
10.1191/096032798678908350, 9506262
-
Henry JA. Composition and toxicity of petroleum products and their additives. Hum Exp Toxicol 1998, 17:111-123. 10.1191/096032798678908350, 9506262.
-
(1998)
Hum Exp Toxicol
, vol.17
, pp. 111-123
-
-
Henry, J.A.1
-
3
-
-
0024041788
-
Petroleum: its composition, analysis and processing
-
King RW. Petroleum: its composition, analysis and processing. Occup Med 1988, 3:409-430.
-
(1988)
Occup Med
, vol.3
, pp. 409-430
-
-
King, R.W.1
-
4
-
-
0031808460
-
Comparison of oil composition changes due to biodegradation and physical weathering in different oils
-
10.1016/S0021-9673(98)00166-6, 9677713
-
Wang Z, Fingas M, Blenkinsopp S, Sergy G, Landriault M, Sigouin L, Foght J, Semple K, Westlake DW. Comparison of oil composition changes due to biodegradation and physical weathering in different oils. J Chromatogr A 1998, 809:89-107. 10.1016/S0021-9673(98)00166-6, 9677713.
-
(1998)
J Chromatogr A
, vol.809
, pp. 89-107
-
-
Wang, Z.1
Fingas, M.2
Blenkinsopp, S.3
Sergy, G.4
Landriault, M.5
Sigouin, L.6
Foght, J.7
Semple, K.8
Westlake, D.W.9
-
5
-
-
0027892494
-
Trends in auto emissions and gasoline composition
-
Sawyer RF. Trends in auto emissions and gasoline composition. Environ Health Perspect 1993, 101:5-12.
-
(1993)
Environ Health Perspect
, vol.101
, pp. 5-12
-
-
Sawyer, R.F.1
-
6
-
-
27344445297
-
The organic composition of diesel particulate matter, diesel fuel and engine oil of a non-road diesel generator
-
10.1039/b504728e, 16193170
-
Liang F, Lu M, Keener TC, Liu Z, Khang SJ. The organic composition of diesel particulate matter, diesel fuel and engine oil of a non-road diesel generator. J Environ Monit 2005, 7:983-988. 10.1039/b504728e, 16193170.
-
(2005)
J Environ Monit
, vol.7
, pp. 983-988
-
-
Liang, F.1
Lu, M.2
Keener, T.C.3
Liu, Z.4
Khang, S.J.5
-
7
-
-
79953757240
-
The marine isolate Novosphingobium sp. PP1Y shows specific adaptation to use the aromatic fraction of fuels as the sole carbon and energy source
-
10.1007/s00248-010-9786-3, 21258788
-
Notomista E, Pennacchio F, Cafaro V, Smaldone G, Izzo V, Troncone L, Varcamonti M, Di Donato A. The marine isolate Novosphingobium sp. PP1Y shows specific adaptation to use the aromatic fraction of fuels as the sole carbon and energy source. Microb Ecol 2011, 61:582-594. 10.1007/s00248-010-9786-3, 21258788.
-
(2011)
Microb Ecol
, vol.61
, pp. 582-594
-
-
Notomista, E.1
Pennacchio, F.2
Cafaro, V.3
Smaldone, G.4
Izzo, V.5
Troncone, L.6
Varcamonti, M.7
Di Donato, A.8
-
8
-
-
2942512907
-
Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains
-
10.1128/JB.186.12.3862-3872.2004, 419928, 15175300
-
Basta T, Keck A, Klein J, Stolz A. Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains. J Bacteriol 2004, 186:3862-3872. 10.1128/JB.186.12.3862-3872.2004, 419928, 15175300.
-
(2004)
J Bacteriol
, vol.186
, pp. 3862-3872
-
-
Basta, T.1
Keck, A.2
Klein, J.3
Stolz, A.4
-
9
-
-
79953795366
-
The lin genes for γ-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids
-
10.1271/bbb.100652, 21389627
-
Tabata M, Endo R, Ito M, Ohtsubo Y, Kumar A, Tsuda M, Nagata Y. The lin genes for γ-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids. Biosci Biotechnol Biochem 2011, 75:466-472. 10.1271/bbb.100652, 21389627.
-
(2011)
Biosci Biotechnol Biochem
, vol.75
, pp. 466-472
-
-
Tabata, M.1
Endo, R.2
Ito, M.3
Ohtsubo, Y.4
Kumar, A.5
Tsuda, M.6
Nagata, Y.7
-
10
-
-
82955240671
-
Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium
-
10.1016/j.enzmictec.2011.10.005, 22142724
-
Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M. Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium. Enzyme Microb Technol 2011, 49:499-508. 10.1016/j.enzmictec.2011.10.005, 22142724.
-
(2011)
Enzyme Microb Technol
, vol.49
, pp. 499-508
-
-
Nagata, Y.1
Natsui, S.2
Endo, R.3
Ohtsubo, Y.4
Ichikawa, N.5
Ankai, A.6
Oguchi, A.7
Fukui, S.8
Fujita, N.9
Tsuda, M.10
-
11
-
-
84860708701
-
The whole genome sequence of Sphingobium chlorophenolicum L-1: insights into the evolution of the pentachlorophenol degradation pathway
-
10.1093/gbe/evr137, 3318906, 22179583
-
Copley SD, Rokicki J, Turner P, Daligault H, Nolan M, Land M. The whole genome sequence of Sphingobium chlorophenolicum L-1: insights into the evolution of the pentachlorophenol degradation pathway. Genome Biol Evol 2012, 4:184-198. 10.1093/gbe/evr137, 3318906, 22179583.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 184-198
-
-
Copley, S.D.1
Rokicki, J.2
Turner, P.3
Daligault, H.4
Nolan, M.5
Land, M.6
-
12
-
-
0025847131
-
Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds
-
182797, 16348445
-
Fredrickson JK, Brockman FJ, Workman DJ, Li SW, Stevens TO. Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds. Appl Environ Microbiol 1991, 57:796-803. 182797, 16348445.
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 796-803
-
-
Fredrickson, J.K.1
Brockman, F.J.2
Workman, D.J.3
Li, S.W.4
Stevens, T.O.5
-
13
-
-
5444269845
-
Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment
-
10.1099/ijs.0.02945-0, 15388699
-
Sohn JH, Kwon KK, Kang JH, Jung HB, Kim SJ. Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. Int J Syst Evol Microbiol 2004, 54:1483-1487. 10.1099/ijs.0.02945-0, 15388699.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1483-1487
-
-
Sohn, J.H.1
Kwon, K.K.2
Kang, J.H.3
Jung, H.B.4
Kim, S.J.5
-
14
-
-
84870359512
-
Biodegradation of bisphenol A and 4-alkylphenols by Novosphingobium sp. strain TYA-1 and its potential for treatment of polluted water
-
10.2166/wst.2012.453, 22949252
-
Toyama T, Kainuma Y, Kikuchi S, Mori K. Biodegradation of bisphenol A and 4-alkylphenols by Novosphingobium sp. strain TYA-1 and its potential for treatment of polluted water. Water Sci Technol 2012, 66:2202-2208. 10.2166/wst.2012.453, 22949252.
-
(2012)
Water Sci Technol
, vol.66
, pp. 2202-2208
-
-
Toyama, T.1
Kainuma, Y.2
Kikuchi, S.3
Mori, K.4
-
15
-
-
39749171128
-
Biodegradation kinetics of select polycyclic aromatic hydrocarbon (PAH) mixtures by Sphingomonas paucimobilis EPA505
-
10.1007/s10532-007-9129-3, 17534722
-
Desai AM, Autenrieth RL, Dimitriou-Christidis P, McDonald TJ. Biodegradation kinetics of select polycyclic aromatic hydrocarbon (PAH) mixtures by Sphingomonas paucimobilis EPA505. Biodegradation 2008, 19:223-233. 10.1007/s10532-007-9129-3, 17534722.
-
(2008)
Biodegradation
, vol.19
, pp. 223-233
-
-
Desai, A.M.1
Autenrieth, R.L.2
Dimitriou-Christidis, P.3
McDonald, T.J.4
-
16
-
-
84875769823
-
Genome-wide analysis of salicylate and dibenzofuran metabolism in Sphingomonas wittichii RW1
-
3425912, 22936930
-
Coronado E, Roggo C, Johnson DR, van der Meer JR. Genome-wide analysis of salicylate and dibenzofuran metabolism in Sphingomonas wittichii RW1. Front Microbiol 2012, 3:300. 3425912, 22936930.
-
(2012)
Front Microbiol
, vol.3
, pp. 300
-
-
Coronado, E.1
Roggo, C.2
Johnson, D.R.3
van der Meer, J.R.4
-
17
-
-
84867660637
-
The degradation of alkylphenols by Sphingomonas sp. strain TTNP3 - a review on seven years of research
-
Kolvenbach BA, Corvini PF. The degradation of alkylphenols by Sphingomonas sp. strain TTNP3 - a review on seven years of research. Nat Biotechnol 2012, 30:88-95.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 88-95
-
-
Kolvenbach, B.A.1
Corvini, P.F.2
-
18
-
-
0033027259
-
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
-
93550, 10049392
-
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J Bacteriol 1999, 181:1585-1602. 93550, 10049392.
-
(1999)
J Bacteriol
, vol.181
, pp. 1585-1602
-
-
Romine, M.F.1
Stillwell, L.C.2
Wong, K.K.3
Thurston, S.J.4
Sisk, E.C.5
Sensen, C.6
Gaasterland, T.7
Fredrickson, J.K.8
Saffer, J.D.9
-
19
-
-
78049434143
-
Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1
-
10.1128/JB.01030-10, 2976435, 20833805
-
Miller TR, Delcher AL, Salzberg SL, Saunders E, Detter JC, Halden RU. Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1. J Bacteriol 2010, 192:6101-6102. 10.1128/JB.01030-10, 2976435, 20833805.
-
(2010)
J Bacteriol
, vol.192
, pp. 6101-6102
-
-
Miller, T.R.1
Delcher, A.L.2
Salzberg, S.L.3
Saunders, E.4
Detter, J.C.5
Halden, R.U.6
-
20
-
-
79961140870
-
De novo sequencing and assembly of the whole genome of Novosphingobium sp. strain PP1Y
-
10.1128/JB.05349-11, 3147705, 21685292
-
D'Argenio V, Petrillo M, Cantiello P, Naso B, Cozzuto L, Notomista E, Paolella G, Di Donato A, Salvatore F. De novo sequencing and assembly of the whole genome of Novosphingobium sp. strain PP1Y. J Bacteriol 2011, 193:4296. 10.1128/JB.05349-11, 3147705, 21685292.
-
(2011)
J Bacteriol
, vol.193
, pp. 4296
-
-
D'Argenio, V.1
Petrillo, M.2
Cantiello, P.3
Naso, B.4
Cozzuto, L.5
Notomista, E.6
Paolella, G.7
Di Donato, A.8
Salvatore, F.9
-
21
-
-
60749116597
-
The Genome Reverse Compiler: an explorative annotation tool
-
Warren AS, Setubal JC. The Genome Reverse Compiler: an explorative annotation tool. BMC Bioinforma 2009, 10:35.
-
(2009)
BMC Bioinforma
, vol.10
, pp. 35
-
-
Warren, A.S.1
Setubal, J.C.2
-
22
-
-
34347388470
-
UniRef: comprehensive and non-redundant UniProt reference clusters
-
10.1093/bioinformatics/btm098, 17379688
-
Baris E, Suzek BE, Huang H, McGarvey P, Mazumder R, Wu CH. UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 2007, 23:1282-1288. 10.1093/bioinformatics/btm098, 17379688.
-
(2007)
Bioinformatics
, vol.23
, pp. 1282-1288
-
-
Baris, E.1
Suzek, B.E.2
Huang, H.3
McGarvey, P.4
Mazumder, R.5
Wu, C.H.6
-
23
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
10.1093/nar/28.1.27, 102409, 10592173
-
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28:27-30. 10.1093/nar/28.1.27, 102409, 10592173.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
24
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
10.1093/nar/gkm160, 1888812, 17452365
-
Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007, 35:3100-3108. 10.1093/nar/gkm160, 1888812, 17452365.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Staerfeldt, H.H.4
Rognes, T.5
Ussery, D.W.6
-
25
-
-
23144460836
-
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
-
10.1093/nar/gki366, 1160127, 15980563
-
Schattner P, Brooks AN, Lowe TM. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 2005, 33:W686-W689. 10.1093/nar/gki366, 1160127, 15980563.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Schattner, P.1
Brooks, A.N.2
Lowe, T.M.3
-
26
-
-
78651323093
-
Rfam: Wikipedia, clans and the " decimal" release
-
10.1093/nar/gkq1129, 3013711, 21062808
-
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the " decimal" release. Nucleic Acids Res 2011, 39:D141-D145. 10.1093/nar/gkq1129, 3013711, 21062808.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.3
Moore, B.L.4
Osuch, I.H.5
Griffiths-Jones, S.6
Finn, R.D.7
Nawrocki, E.P.8
Kolbe, D.L.9
Eddy, S.R.10
Bateman, A.11
-
27
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
10.1093/bioinformatics/btp157, 2732312, 19307242
-
Nawrocki EP, Kolbe DL, Eddy SR. Infernal 1.0: Inference of RNA alignments. Bioinformatics 2009, 25:1335-1337. 10.1093/bioinformatics/btp157, 2732312, 19307242.
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.R.3
-
28
-
-
41349112730
-
Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes
-
Gao F, Zhang CT. Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes. BMC Bioinforma 2008, 9:79.
-
(2008)
BMC Bioinforma
, vol.9
, pp. 79
-
-
Gao, F.1
Zhang, C.T.2
-
29
-
-
34247148876
-
RNA antitoxins
-
10.1016/j.mib.2007.03.003, 17376733
-
Gerdes K, Wagner EG. RNA antitoxins. Curr Opin Microbiol 2007, 10:117-124. 10.1016/j.mib.2007.03.003, 17376733.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 117-124
-
-
Gerdes, K.1
Wagner, E.G.2
-
30
-
-
0025183708
-
Basic local alignment search tool
-
10.1016/S0022-2836(05)80360-2, 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215:403-410. 10.1016/S0022-2836(05)80360-2, 2231712.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
31
-
-
78049378552
-
Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26
-
10.1128/JB.00961-10, 2953701, 20817768
-
Nagata Y, Ohtsubo Y, Endo R, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M. Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26. J Bacteriol 2010, 192:5852-5853. 10.1128/JB.00961-10, 2953701, 20817768.
-
(2010)
J Bacteriol
, vol.192
, pp. 5852-5853
-
-
Nagata, Y.1
Ohtsubo, Y.2
Endo, R.3
Ichikawa, N.4
Ankai, A.5
Oguchi, A.6
Fukui, S.7
Fujita, N.8
Tsuda, M.9
-
32
-
-
33751017401
-
Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation
-
10.1128/AEM.01531-06, 1636184, 16963556
-
Miyazaki R, Sato Y, Ito M, Ohtsubo Y, Nagata Y, Tsuda M. Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation. Appl Environ Microbiol 2006, 72:6923-6933. 10.1128/AEM.01531-06, 1636184, 16963556.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 6923-6933
-
-
Miyazaki, R.1
Sato, Y.2
Ito, M.3
Ohtsubo, Y.4
Nagata, Y.5
Tsuda, M.6
-
33
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya Y, Itoh M, Okuda S, Yoshizawa A, Kanehisa M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 2007, 35:182-185.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 182-185
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.4
Kanehisa, M.5
-
34
-
-
80054757000
-
Microbial degradation of aromatic compounds - from one strategy to four
-
10.1038/nrmicro2652, 21963803
-
Fuchs G, Boll M, Heider J. Microbial degradation of aromatic compounds - from one strategy to four. Nat Rev Microbiol 2011, 9:803-816. 10.1038/nrmicro2652, 21963803.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 803-816
-
-
Fuchs, G.1
Boll, M.2
Heider, J.3
-
35
-
-
7044256746
-
Phenol hydroxylase and toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1: interplay between two enzymes
-
10.1128/AEM.70.4.2211-2219.2004, 383105, 15066815
-
Cafaro V, Izzo V, Scognamiglio R, Notomista E, Capasso P, Casbarra A, Pucci P, Di Donato A. Phenol hydroxylase and toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1: interplay between two enzymes. Appl Environ Microbiol 2004, 70:2211-2219. 10.1128/AEM.70.4.2211-2219.2004, 383105, 15066815.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2211-2219
-
-
Cafaro, V.1
Izzo, V.2
Scognamiglio, R.3
Notomista, E.4
Capasso, P.5
Casbarra, A.6
Pucci, P.7
Di Donato, A.8
-
36
-
-
10444279326
-
Identification of a Novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. Strain DK17
-
10.1128/AEM.70.12.7086-7092.2004, 535206, 15574904
-
Kim D, Chae JC, Zylstra GJ, Kim YS, Kim SK, Nam MH, Kim YM, Kim E. Identification of a Novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. Strain DK17. Appl Environ Microbiol 2004, 70:7086-7092. 10.1128/AEM.70.12.7086-7092.2004, 535206, 15574904.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 7086-7092
-
-
Kim, D.1
Chae, J.C.2
Zylstra, G.J.3
Kim, Y.S.4
Kim, S.K.5
Nam, M.H.6
Kim, Y.M.7
Kim, E.8
-
37
-
-
0342948903
-
Identification of an extradiol dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene product
-
10.1128/JB.182.3.789-795.2000, 94344, 10633115
-
Andújar E, Hernáez MJ, Kaschabek SR, Reineke W, Santero E. Identification of an extradiol dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene product. J Bacteriol 2000, 182:789-795. 10.1128/JB.182.3.789-795.2000, 94344, 10633115.
-
(2000)
J Bacteriol
, vol.182
, pp. 789-795
-
-
Andújar, E.1
Hernáez, M.J.2
Kaschabek, S.R.3
Reineke, W.4
Santero, E.5
-
38
-
-
0031278034
-
A family of Gram-negative bacterial outer membrane factors that function in the export of protein, carbohydrates, drugs, and heavy metals from Gram-negative bacteria
-
10.1016/S0378-1097(97)00379-0, 9368353
-
Paulson IT, Park JH, Choi PS, Saier MH. A family of Gram-negative bacterial outer membrane factors that function in the export of protein, carbohydrates, drugs, and heavy metals from Gram-negative bacteria. FEMS Microbiol Lett 1997, 156:1-8. 10.1016/S0378-1097(97)00379-0, 9368353.
-
(1997)
FEMS Microbiol Lett
, vol.156
, pp. 1-8
-
-
Paulson, I.T.1
Park, J.H.2
Choi, P.S.3
Saier, M.H.4
-
39
-
-
77956398098
-
The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments
-
10.1371/journal.pone.0010433, 2864759, 20463976
-
Janssen PJ, Van Houdt R, Moors H, Monsieurs P, Morin N, Michaux A, Benotmane MA, Leys N, Vallaeys T, Lapidus A, Monchy S, Médigue C, Taghavi S, McCorkle S, Dunn J, van der Lelie D, Mergeay M. The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One 2010, 5:e10433. 10.1371/journal.pone.0010433, 2864759, 20463976.
-
(2010)
PLoS One
, vol.5
-
-
Janssen, P.J.1
Van Houdt, R.2
Moors, H.3
Monsieurs, P.4
Morin, N.5
Michaux, A.6
Benotmane, M.A.7
Leys, N.8
Vallaeys, T.9
Lapidus, A.10
Monchy, S.11
Médigue, C.12
Taghavi, S.13
McCorkle, S.14
Dunn, J.15
van der Lelie, D.16
Mergeay, M.17
-
40
-
-
0038444418
-
Interplay of the Czc system and two P-type ATPases in conferring metal resistance to Ralstonia metallidurans
-
10.1128/JB.185.15.4354-4361.2003, 165768, 12867443
-
Legatzki A, Grass G, Anton A, Rensing C, Nies DH. Interplay of the Czc system and two P-type ATPases in conferring metal resistance to Ralstonia metallidurans. J Bacteriol 2003, 185:4354-4361. 10.1128/JB.185.15.4354-4361.2003, 165768, 12867443.
-
(2003)
J Bacteriol
, vol.185
, pp. 4354-4361
-
-
Legatzki, A.1
Grass, G.2
Anton, A.3
Rensing, C.4
Nies, D.H.5
-
41
-
-
66749169975
-
Tellurite: history, oxidative stress, and molecular mechanisms of resistance
-
10.1111/j.1574-6976.2009.00177.x, 19368559
-
Chasteen TG, Fuentes DE, Tantaleán JC, Vásquez CC. Tellurite: history, oxidative stress, and molecular mechanisms of resistance. FEMS Microbiol Rev 2009, 33:820-832. 10.1111/j.1574-6976.2009.00177.x, 19368559.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 820-832
-
-
Chasteen, T.G.1
Fuentes, D.E.2
Tantaleán, J.C.3
Vásquez, C.C.4
-
42
-
-
84869219169
-
Comparative analysis of genome sequences covering the seven Cronobacter species
-
10.1371/journal.pone.0049455, 3500316, 23166675
-
Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ. Comparative analysis of genome sequences covering the seven Cronobacter species. PLoS One 2012, 7:e49455. 10.1371/journal.pone.0049455, 3500316, 23166675.
-
(2012)
PLoS One
, vol.7
-
-
Joseph, S.1
Desai, P.2
Ji, Y.3
Cummings, C.A.4
Shih, R.5
Degoricija, L.6
Rico, A.7
Brzoska, P.8
Hamby, S.E.9
Masood, N.10
Hariri, S.11
Sonbol, H.12
Chuzhanova, N.13
McClelland, M.14
Furtado, M.R.15
Forsythe, S.J.16
-
43
-
-
0036718561
-
Genomic variability of O islands encoding tellurite resistance in Enterohemorrhagic Escherichia coli O157:H7 isolates
-
10.1128/JB.184.17.4690-4698.2002, 135296, 12169592
-
Taylor DE, Rooker M, Keelan M, Ng LK, Martin I, Perna NT, Burland NT, Blattner FR. Genomic variability of O islands encoding tellurite resistance in Enterohemorrhagic Escherichia coli O157:H7 isolates. J Bacteriol 2002, 184:4690-4698. 10.1128/JB.184.17.4690-4698.2002, 135296, 12169592.
-
(2002)
J Bacteriol
, vol.184
, pp. 4690-4698
-
-
Taylor, D.E.1
Rooker, M.2
Keelan, M.3
Ng, L.K.4
Martin, I.5
Perna, N.T.6
Burland, N.T.7
Blattner, F.R.8
-
44
-
-
0034110932
-
Glutathione-dependent conversion of N-ethylmaleimide to the maleamic acid by Escherichia coli: an intracellular detoxification process
-
10.1128/AEM.66.4.1393-1399.2000, 91998, 10742217
-
McLaggan D, Rufino H, Jaspars M, Booth IR. Glutathione-dependent conversion of N-ethylmaleimide to the maleamic acid by Escherichia coli: an intracellular detoxification process. Appl Environ Microbiol 2000, 66:1393-1399. 10.1128/AEM.66.4.1393-1399.2000, 91998, 10742217.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1393-1399
-
-
McLaggan, D.1
Rufino, H.2
Jaspars, M.3
Booth, I.R.4
-
45
-
-
44849143455
-
Mechanism and regulation of the two-component FMN-dependent monooxygenase ActVA-ActVB from Streptomyces coelicolor
-
10.1074/jbc.M709730200, 2447630, 18245777
-
Valton J, Mathevon C, Fontecave M, Nivière V, Ballou DP. Mechanism and regulation of the two-component FMN-dependent monooxygenase ActVA-ActVB from Streptomyces coelicolor. J Biol Chem 2008, 283:10287-10296. 10.1074/jbc.M709730200, 2447630, 18245777.
-
(2008)
J Biol Chem
, vol.283
, pp. 10287-10296
-
-
Valton, J.1
Mathevon, C.2
Fontecave, M.3
Nivière, V.4
Ballou, D.P.5
-
46
-
-
77349127553
-
Monooxygenases as biocatalysts: Classification, mechanistic aspects and biotechnological applications
-
10.1016/j.jbiotec.2010.01.021, 20132846
-
Torres Pazmiño DE, Winkler M, Glieder A, Fraaije MW. Monooxygenases as biocatalysts: Classification, mechanistic aspects and biotechnological applications. J Biotechnol 2010, 146:9-24. 10.1016/j.jbiotec.2010.01.021, 20132846.
-
(2010)
J Biotechnol
, vol.146
, pp. 9-24
-
-
Torres Pazmiño, D.E.1
Winkler, M.2
Glieder, A.3
Fraaije, M.W.4
-
47
-
-
75149177776
-
The ArcBA two-component system of Escherichia coli is regulated by the redox state of both the ubiquinone and the menaquinone pool
-
10.1128/JB.01156-09, 2812447, 19933363
-
Bekker M, Alexeeva S, Laan W, Sawers G, Teixeira De Mattos J, Hellingwerf K. The ArcBA two-component system of Escherichia coli is regulated by the redox state of both the ubiquinone and the menaquinone pool. J Bacteriol 2010, 192:746-754. 10.1128/JB.01156-09, 2812447, 19933363.
-
(2010)
J Bacteriol
, vol.192
, pp. 746-754
-
-
Bekker, M.1
Alexeeva, S.2
Laan, W.3
Sawers, G.4
Teixeira De Mattos, J.5
Hellingwerf, K.6
-
48
-
-
84858988771
-
Quorum Sensing and Bacterial Social Interactions in Biofilms
-
10.3390/s120302519, 3376616, 22736963
-
Li YH, Tian X. Quorum Sensing and Bacterial Social Interactions in Biofilms. Sensors 2012, 12:2519-2538. 10.3390/s120302519, 3376616, 22736963.
-
(2012)
Sensors
, vol.12
, pp. 2519-2538
-
-
Li, Y.H.1
Tian, X.2
-
49
-
-
45549093117
-
Biofilm development with an emphasis on Bacillus subtilis
-
2397442, 18453269
-
Lemon KP, Earl AM, Vlamakis HC, Aguilar C, Kolter R. Biofilm development with an emphasis on Bacillus subtilis. Curr Top Microbiol Immunol 2008, 322:1-16. 2397442, 18453269.
-
(2008)
Curr Top Microbiol Immunol
, vol.322
, pp. 1-16
-
-
Lemon, K.P.1
Earl, A.M.2
Vlamakis, H.C.3
Aguilar, C.4
Kolter, R.5
-
50
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
51
-
-
65449188232
-
Jalview Version 2: a multiple sequence alignment editor and analysis workbench
-
10.1093/bioinformatics/btp033, 2672624, 19151095
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview Version 2: a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25:1189-1191. 10.1093/bioinformatics/btp033, 2672624, 19151095.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
52
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
10.1093/molbev/msr121, 3203626, 21546353
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 3203626, 21546353.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
53
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
54
-
-
0001895697
-
Evolutionary divergence and convergence in proteins
-
New York: Academic Press, Bryson V, Vogel HJ
-
Zuckerkandl E, Pauling L. Evolutionary divergence and convergence in proteins. Evolving Genes and Proteins 1965, 97-166. New York: Academic Press, Bryson V, Vogel HJ.
-
(1965)
Evolving Genes and Proteins
, pp. 97-166
-
-
Zuckerkandl, E.1
Pauling, L.2
-
55
-
-
10344235266
-
The Role of the Conserved Residues His-246, His-199, and Tyr-255 in the Catalysis of Catechol 2,3-Dioxygenase from Pseudomonas stutzeri OX1
-
10.1074/jbc.M406243200, 15347689
-
Viggiani A, Siani L, Notomista E, Birolo L, Pucci P, Di Donato A. The Role of the Conserved Residues His-246, His-199, and Tyr-255 in the Catalysis of Catechol 2,3-Dioxygenase from Pseudomonas stutzeri OX1. J Biol Chem 2004, 279:48630-48639. 10.1074/jbc.M406243200, 15347689.
-
(2004)
J Biol Chem
, vol.279
, pp. 48630-48639
-
-
Viggiani, A.1
Siani, L.2
Notomista, E.3
Birolo, L.4
Pucci, P.5
Di Donato, A.6
-
56
-
-
14844303549
-
The bphC gene-encoded 2,3-dihydroxybiphenyl-1,2-dioxygenase is involved in complete degradation of dibenzofuran by the biphenyl-degrading bacterium Ralstonia sp. SBUG 290
-
10.1111/j.1365-2672.2004.02489.x, 15715866
-
Wesche J, Hammer E, Becher D, Burchhardt G, Schauer F. The bphC gene-encoded 2,3-dihydroxybiphenyl-1,2-dioxygenase is involved in complete degradation of dibenzofuran by the biphenyl-degrading bacterium Ralstonia sp. SBUG 290. J Appl Microbiol 2005, 98:635-645. 10.1111/j.1365-2672.2004.02489.x, 15715866.
-
(2005)
J Appl Microbiol
, vol.98
, pp. 635-645
-
-
Wesche, J.1
Hammer, E.2
Becher, D.3
Burchhardt, G.4
Schauer, F.5
-
57
-
-
17844401197
-
An expedient one-pot entry to catecholestrogens and other catechol compounds via IBX-mediated phenolic oxygenation
-
Pezzella A, Lista L, Napolitano A, D'Ischia M. An expedient one-pot entry to catecholestrogens and other catechol compounds via IBX-mediated phenolic oxygenation. Tetrahedron Lett 2005, 46:3541-3544.
-
(2005)
Tetrahedron Lett
, vol.46
, pp. 3541-3544
-
-
Pezzella, A.1
Lista, L.2
Napolitano, A.3
D'Ischia, M.4
|