Characterization of the replication, transfer, and plasmid/lytic phage cycle of the streptomyces plasmid-phage pZL12

Journal of Bacteriology

Volumn 192, Issue 14, 2010, Pages 3747-3754

  Zhong, Li ^a   Cheng, Qiuxiang ^a   Tian, Xinli ^a   Zhao, Liqian ^a   Qin, Zhongjun ^a  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL INFECTION; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIOPHAGE; CLONING; GENE LOCUS; ISOLATION PROCEDURE; LYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; STREPTOMYCES; TRANSMISSION ELECTRON MICROSCOPY; VIRUS CAPSID;

BACTERIOPHAGES; DNA, VIRAL; GENE EXPRESSION REGULATION, VIRAL; MOLECULAR SEQUENCE DATA; PLAQUE ASSAY; PLASMIDS; STREPTOMYCES; VIRUS REPLICATION;

MIRIDAE; STREPTOMYCES; STREPTOMYCES SP.;

EID: 77954394493     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00123-10     Document Type: Article

References (41)

1. Aguilar, A., and D. A. Hopwood. 1982. Determination of methylenomycin A synthesis by the pSV1 plasmid from Streptomyces violaceus-ruber SANK 95570. J. Gen. Microbiol. 128:1893-1901.
2. Bai, L., L. Li, H. Xu, K. Minagawa, Y. Yu, Y. Zhang, X. Zhou, H. G. Floss, T. Mahmud, and Z. Deng. 2006. Functional analysis of the validamycin biosynthetic gene cluster and engineered production of validoxylamine A. Chem. Biol. 13:387-397.
3. Bentley, S. D., S. Brown, L. D. Murphy, D. E. Harris, M. A. Quail, J. Parkhill, B. G. Barrell, J. R. McCormick, R. I. Santamaria, R. Losick, M. Yamasaki, H. Kinashi, C. W. Chen, G. Chandra, D. Jakimowicz, H. M. Kieser, T. Kieser, and K. F. Chater. 2004. SCP1, a 356,023 bp linear plasmid adapted to the ecology and developmental biology of its host, Streptomyces coelicolor A3(2). Mol. Microbiol. 51:1615-1628.
4. Bibb, M. J., J. M. Ward, T. Kieser, S. N. Cohen, and D. A. Hopwood. 1981. Excision of chromosomal DNA sequences from Streptomyces coelicolor forms a novel family of plasmids detectable in Streptomyces lividans. Mol. Gen. Genet. 184:230-240.
5. Bierman, M., R. Logan, K. O'Brien, E. T. Seno, R. N. Rao, and B. E. Schoner. 1992. Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene 116:43-49.
6. Burke, J., D. Schneider, and J. Westpheling. 2001. Generalized transduction in Streptomyces coelicolor. Proc. Natl. Acad. Sci. U. S. A. 98:6289-6294.
7. Cao, L., Z. Qiu, X. Dai, H. Tan, Y. Lin, and S. Zhou. 2004. Isolation of endophytic actinomycetes from roots and leaves of banana (Musa acuminata) plants and their activities against Fusarium oxysporum f. sp. cubense. World J. Microbiol. Biotechnol. 20:501-504. (Pubitemid 39211253)
8. Chater, K. F. 1986. Streptomyces phages and their application to Streptomyces genetics, p. 119-158. In S. W. Queener and L. E. Day (ed.), The Bacteria, vol. 9. Academic Press, Orlando, FL.
9. Farkasovská, J., L. Klucar, C. Vlcek, J. Kokavec, and A. Godány. 2007. Complete genome sequence and analysis of the Streptomyces aureofaciens phage mu1/6. Folia Microbiol. (Praha) 52:347-358.
10. Fong, R., J. A. Vroom, Z. Hu, C. R. Hutchinson, J. Huang, S. N. Cohen, and C. Kao. 2007. Characterization of a large, stable, high-copy-number Streptomyces plasmid that requires stability and transfer functions for heterologous polyketide overproduction. Appl. Environ. Microbiol. 73:1296-1307.
11. Foor, F., G. P. Roberts, N. Morin, L. Snyder, M. Hwang, P. H. Gibbons, M. J. Paradiso, R. L. Stotish, C. L. Ruby, B. Wolanski, et al. 1985. Isolation and characterization of the Streptomyces cattleya temperate phage TG1. Gene 39:11-16.
12. Grohmann, E., G. Muth, and M. Espinosa. 2003. Conjugative plasmid transfer in gram-positive bacteria. Microbiol. Mol. Biol. Rev. 67:277-301.
13. Haug, I., A. Weissenborn, D. Brolle, S. Bentley, T. Kieser, and J. Altenbuchner. 2003. Streptomyces coelicolor A3(2) plasmid SCP2*: deductions from the complete sequence. Microbiology 149:505-513.
14. Hopwood, D. A., and T. Kieser. 1993. Conjugative plasmids of Streptomyces, p. 293-311. In D. B. Clewell (ed.), Bacterial conjugation. Plenum Press, New York, NY.
15. Hopwood, D. A. 2006. Soil to genomics: the Streptomyces chromosome. Annu. Rev. Genet. 40:1-23.
16. Katz, E., C. J. Thompson, and D. A. Hopwood. 1983. Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. J. Gen. Microbiol. 129:2703-2714.
17. Kieser, T. 1984. Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli. Plasmid 12(1):19-36. (Pubitemid 14046088)
18. Kieser, T., M. J. Bibb, M. J. Buttner, K. F. Chater, and D. A. Hopwood. 2000. Practical Streptomyces genetics. The John Innes Foundation, Norwich, United Kingdom.
19. Kuhn, S. P., J. S. Lampel, and W. R. Strohl. 1987. Isolation and characterization of a temperate bacteriophage from Streptomyces galilaeus. Appl. Environ. Microbiol. 53:2708-2713.
20. Lanka, E., and B. M. Wilkins. 1995. DNA processing reactions in bacterial conjugation. Annu. Rev. Biochem. 64:141-169.
21. Łobocka, M. B., D. J. Rose, G. Plunkett III, M. Rusin, A. Samojedny, H. Lehnherr, M. B. Yarmolinsky, and F. R. Blattner. 2004. Genome of bacteriophage P1. J. Bacteriol. 186:7032-7068.
22. Lomovskaya, N. D., N. M. Mkrtumian, N. L. Gostimskaya, and V. N. Danilenko. 1972. Characterization of temperate actinophage phi C31 isolated from Streptomyces coelicolor A3(2). J. Virol. 9:258-262.
23. Lomovskaya, N. D., K. F. Chater, and N. M. Mkrtumian. 1980. Genetics and molecular biology of Streptomyces bacteriophages. Microbiol. Rev. 44:206-229.
24. McHenney, M. A., and R. H. Baltz. 1988. Transduction of plasmid DNA in Streptomyces spp. and related genera by bacteriophage FP43. J. Bacteriol. 170:2276-2282.
25. Motamedi, H., E. Wendt-Pienkowski, and C. R. Hutchinson. 1986. Isolation of tetracenomycin C-nonproducing Streptomyces glaucescens mutants. J. Bacteriol. 167:575-580.
26. Ogata, S., H. Suenaga, and S. Hayashida. 1985. A temperate phage of Streptomyces azureus. Appl. Environ. Microbiol. 49:201-204.
27. Omer, C. A., and S. N. Cohen. 1984. Plasmid formation in Streptomyces: excision and integration of the SLP1 replicon at a specific chromosomal site. Mol. Gen. Genet. 196:429-438.
28. Pernodet, J. L., J. M. Simonet, and M. Guérineau. 1984. Plasmids in different strains of Streptomyces ambofaciens: free and integrated form of plasmid pSAM2. Mol. Gen. Genet. 198:35-41.
29. Pettis, G. S., and S. N. Cohen. 1994. Transfer of the plJ101 plasmid in Streptomyces lividans requires a cis-acting function dispensable for chromosomal gene transfer. Mol. Microbiol. 13:955-964.
30. Qin, Z., M. Shen, and S. N. Cohen. 2003. Identification and characterization of a pSLA2 plasmid locus required for linear DNA replication and circular plasmid stable inheritance in Streptomyces lividans. J. Bacteriol. 185:6575-6582.
31. Ravin, N. V. 2003. Mechanisms of replication and telomere resolution of the linear plasmid prophage N15. FEMS Microbiol. Lett. 221:1-6.
32. Reuther, J., C. Gekeler, Y. Tiffert, W. Wohlleben, and G. Muth. 2006. Unique conjugation mechanism in mycelial streptomycetes: a DNA-binding ATPase translocates unprocessed plasmid DNA at the hyphal tip. Mol. Microbiol. 61:436-446.
33. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
34. Schneider, J., F. Korn-Wendisch, and H. J. Kutzner. 1990. Phi SC623, a temperate actinophage of Streptomyces coelicolor Müller, and its relatives phi SC347 and phi SC681. J. Gen. Microbiol. 136:767-772.
35. Smith, M. C., R. N. Burns, S. E. Wilson, and M. A. Gregory. 1999. The complete genome sequence of the Streptomyces temperate phage straight φC31: evolutionary relationships to other viruses. Nucleic Acids Res. 27:2145-2155.
36. Xia, H., J. Huang, M. Hu, M. Shen, P. Xie, L., Zhang, H. Wang, and Z. Qin. 2009. Construction of an ordered cosmid library of S. avermitilis for genetic modification of the industrial strains. Chin. J. Antibiot. 34:340-343.
37. Yamasaki, M., Y. Ikuto, A. Ohira, K. Chater, and H. Kinashi. 2003. Limited regions of homology between linear and circular plasmids encoding methylenomycin biosynthesis in two independently isolated streptomycetes. Microbiology 149(5):1351-1356.
38. Yang, K., L. Han, J. He, L. Wang, and L. C. Vining. 2001. A repressorresponse regulator gene pair controlling jadomycin B production in Streptomyces venezuelae ISP5230. Gene 279:165-173.
39. Yarmolinsky, M. B., and N. Strernberg. 1988. Bacteriophage P1, p. 291-438. In R. Calender (ed.), The bacteriophages, vol. 1. Plenum Publishing Corporation, New York, NY.
40. Zhang, R., A. Zeng, P. Fang, and Z. Qin. 2008. Characterization of the replication and conjugation loci of Streptomyces circular plasmids pFP11 and pFP1 and their ability to propagate in linear mode with artificially attached telomeres. Appl. Environ. Microbiol. 74:3368-3376.
41. Zhou, X., Z. Deng, J. L. Firmin, D. A. Hopwood, and T. Kieser. 1988. Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron. Nucleic Acids Res. 16:4341-4352.